>input_sequence_62840
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----------------------------------------------------------------------------ATGA
ACTTGTGTGCTATCCTATTGAAGACGGTGAACATGACAAGCGAGGAAGACATGGCCGACGACATCTTGAGTATTATACAA
GCAATTGATCCATTGTACAGGATCAACGGTCATTTACCACAATACTATGCTGAAATGATAGACAAACTGAAGAAACCACC
AAGAAC---------------ACTGAATGTTGAGGAACTAAGAAAATTCCACTTGAAGGTGTTGAAAAGACCTGCTTTCG
CTACACCTGAACTGAGGTCATACGGTGTTCAAGAGTTCTACACCAACACCTTGGACCTGGAATTTGACACTCCTGAATGG
AGGGCCTTTGACAGTTCTGCCCCAGTGCATTTAGAGGACTGGCAGCACATCACCAAGGTTGATGAACTTCTGTTAAAAAA
GTTAATAGAGAGCAGTGGTATGGAGGACAAATTTGGGAAGCAGTGCCATTACATGCGGCATCTTGTGGTGCACTCACCTG
AGGACAAGG---AGAAGAAGTATCTATCTGATAACAAAAAGAAGGTACTCGTTTCTTTTTCTACCTGATGAGGAAAACAA
TATTAAATTGCCTGCTTTAACCAATTGACTCACAAATTACAGGCCCATGATCCTTTGGCCGCGTCGGCGAGTCACTCTGG
AGCTCGCCCCCGCCTCCCTCCTCAGCCCACAAGAAAGGTATGGCTATCCTCTACTCTCTCATCTTCCCCTGTCTCACTTC
TCCCGCACTTACTCTCCAGCTCATAATTTACATTAAATCAGGACGCTCTCTTTCCTGCAATTATGTCTCAAGCTAAAGCG
AAGAAGACAACCCCCAGCAGCTCCTCCGCAGGTCCCCACCCTAAGCCCAAGGTATTGTTCGCATTCCTTTTTCCATCCCT
ATCCCACTGCTCAGTAGGTGCCTGTTTCTAATTGTATTTGTGTAATTGTGCATTAAGGTGTTGTTGCTGATGCCGGAGAG
AGACATGCTGGCCCATTATTATTTCAGAGAATTTATGCCTGCATTTGTTGACCTCTTGTACAAAGAGAAGGATAAATAA-
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>chr3A_1_TraesCS3A01G261000
ACAGCAGCAGCGACTCGGCCAGTCCTCATATAGTCAGCAGCAGCAGCAACTTCGCCAGTTCTCATACAGTC---------
---------------------------AGCACCAATTCGGCCAGCTTTCATATGATCAGCAGCAGGTCTCATCAAGTAGT
CTGGCCCAGCAGCTGCAGCAGCAGCAGCTCTCGTCAGCTGGTCAGGCCCAGCAGCTGCAGCAGCCGCAGCAGCAGCTCTC
AACAGCCAGTAAGATCCAGCAGCAGGGACAGGGTCAGATCTCCTCCGCCAGTCAGCCCCAGCTGCAGCACGAGAGCCCAT
CAGATTCAGCAGCAGCTGCAGATTCACAATCATCATCCCAGGAGGTTCACCACCAGCAGCTGCTCGTAGGCTCATCACCT
GAGACAACATCCAGTGTGCAGAATGTACCAGTTCTTTGGACAATTGGTCTAGATCTGCCTCCCCACATTGAGGAAAGCAA
TCTATGCTTCATGTTCAGGAAGATACCAGAGCATGTTCTGAAGGTTGGAAAAAGAGGCACAGTGCAATTTAGCAACTTTG
AAGATGCACAGGCAGCACAAAAAAGATGGACCATTAAGGAAAAGATTCTCCAAAGGAGTGAAGATTACAAAAAGCACATC
AGATCAGTGCCATACGGCAGAATGGTACCTGAGCTGGGTTCCATAGCGACTAAGAGACAGAGAGAGGAAGAAGTTGGAAT
AAAGTCGTCTCAAATGGAAGCAGTGAAGCGACATAAACAAGATGATGCAGCGAGGAGTCTGCAAGACGACCCCTATAAAT
GGTGCACGGTTGAGGACTTCTCAAAAGAAAAACCTGAGAATGAGCTTGTGAGGGCTTTTAAGTTTGTGGCTGCTGCAATC
CGAGGTTCGGTCGGCCCCAAGATAACGCTATGTGCAGCAGGCCCTATGGGAAACTACATCGTCGCTAGCATACTCGGGCA
TGCATTCGCCGCGCATTTGAGTGGAAGAACCTGGAAAGGTAAAATGAAGACAAGGCATTTAGCCATATAAAAAAAAATGA
ACTTGTGTGCTATCCTATTGAAGACGGTGAACATGACAAGCGAGGAAGACATGGCCGACGACATCTTGAGTATTATACAA
GCAATTGATCCATTGTACAGGATCAACGGTCATTTACCACAATACTATGCTGAAATGATAGACAAACTGAAGAAACCACC
AAGAAC---------------ACTGAATGTTGAGGAACTAAGAAAATTCCACTTGAAGGTGTTGAAAAGACCTGCTTTCG
CTACACCTGAACTGAGGTCATACGGTGTTCAAGAGTTCTACACCAACACCTTGGACCTGGAATTTGACACTCCTGAATGG
AGGGCCTTTGACAGTTCTGCCCCAGTGCATTTAGAGGACTGGCAGCACATCACCAAGGTTGATGAACTTCTGTTAAAAAA
GTTAATAGAGAGCAGTGGTATGGAGGACAAATTTGGGAAGCAGTGCCATTACATGCGGCATCTTGTGGTGCACTCACCTG
AGGACAAGG---AGAAGAAGTATCTATCTGATAACAAAAAGAAGGTACTCGTTTCTTTTTCTACCTGATGAGGAAAACAA
TATTAAATTGCCTGCTTTAACCAATTGACTCACAAATTACAGGCCCATGATCCTTTGGCCGCGTCGGCGAGTCACTCTGG
AGCTCGCCCCCGCCTCCCTCCTCAGCCCACAAGAAAGGTATGGCTATCCTCTACTCTCTCATCTTCCCCTGTCTCACTTC
TCCCGCACTTACTCTCCAGCTCATAATTTACATTAAATCAGGACGCTCTCTTTCCTGCAATTATGTCTCAAGCTAAAGCG
AAGAAGACAACCCCCAGCAGCTCCTCCGCAGGTCCCCACCCTAAGCCCAAGGTATTGTTCGCATTCCTTTTTCCATCCCT
ATCCCACTGCTCAGTAGGTGCCTGTTTCTAATTGTATTTGTGTAATTGTGCATTAAGGTGTTGTTGCTGATGCCGGAGAG
AGACATGCTGGCCCATTATTATTTCAGAGAATTTATGCCTGCATTTGTTGACCTCTTGTACAAAGAGAAGGATAAATAAG
AGTGTCTTCGGGAAATTTGGAACTCTTATGATAGAGGTATTCCCATTGTGGGGTATGTACCTTATGATATGATTCCTGAG
AGATTCCTCGAAGAACTCGAGGAAGACAATGCCAGGTATTCCTTCAAGTTATGTATTGCATTTTTGTGCTGCAACATTCT
GTTTCGGCCATATGTTGTGTTATTTGACATTGAGTTGGTGGAGGTTTCTTACATGTACCAAGATGATGTTTTAATAGCTG
GAATTGTGTTTTTTTAGCTCTGGAGGTGAAAAAGTCATGGAGGTGGACTAGCTGGGAGAAGGAGATCGCTGCCCAGGATA
ACTGATCAAGTTCTTTGTTAGCTAGTATTTTTTGTGGTGATACTGAGCTGGGAGAAGGAGGTGGGCTAGCTGGGAGAAGG
CGCTCGCTGCCCATGATAACTGATCAAGTTCTTTGTTAGCTAGTATTTTTTTTTGTAATGATACTGAGCGAGTGCCGTGT
GGTTTAGCACATCTTTTTATCCCAGTCTCCTAGTTTAGTGGTACCTTCGGGGAGAAGACACATGACAGATTGATAGCTTC
CGGAAACTTTCTATTGGTTGATATCTTCTGGAAACCAAGCATGATTGCCTCAGAAAATGCTAGGCTGAGCCCTTTTATGC
TGGTCGTTTGATTGCTGCAAGATTCTAAGGTGGCGTTTGGTTGTGGCTATCCCAGGATGGGATAGGGATAGCCCTTTTTC
TTTGAGGGATAGCAGTCGTTTGGATGAGAGGATAGTGTGGTTGAGGGCAGCCACGGTTCCTGAATATTCTCACGAAAAAC
TGGTTGAGGCTGTTCCCGAAAGTCTGGCGGATGGTGGCAACCACCCGTGTTCGCTGCACTCCGATCACCTCCTGCAGCCC
CCAGCATGGGTGATTTTGGAATGCCGACTGGACTCGGCGAGCGCCGACGGTAGGTAACAGGCAGTGCCGGCGGCATGGAA
TCGCGAGGCTTCTCTCCTCTCCTTTGTTCTCGTCTATTG
>chr3D_1
ACAGCAGCAGCGACTCGGCCAGTCCTCATACAGTCAGCAGCAGCAGCAACTTCGCCAGTTCTCATACAGTCAGCAGCAAC
TTGGCCAGTTCTCATACAGTCAGCAGCAGCAGCAATTCGGCCAGCTTCCATATGATCAGCAGCAGCTCTCATCAAGTAGT
CTGGCCCAGCAGCTGCAGCAGCAGCAGCTCTCGTCAACTGGTCAGGCCCAGCAGCTGCAGCAGC------AGCAGCTCTC
AACAGCCAGTAAGATCCAGCAGCAGGGACAGGGTCAGATCTCCTCCGCCAGTCAGTCCCAGCAGCAGCACGAGAGCCCAT
CAGATTCAGCAGCAGCTGCAGATTCACAATCATCATCCCAGGAGGTTCACCACCAGCAGCTGCTCGTAGGCTCATCACCT
GAGACAACATCCAGTGTGCAGAATGTACCACTTCTTTGGACAATTGGTCTCAATCTGCCTCCCCACATTGAGGAAAGCAA
TCTATGCTTCATGTTCAGGAAGATACCAGAGCATGTTCTGAAGGTGGGAAAAAGAGGCACAGTGCAATTTAGCAACTTAG
AAGATGCACAGGCAGCACAAAAAAGGTGGACCATTAGGGAAAAGATTGTCCAAAGGAATGCAGATTACAAAAAGCACATC
AGATCAGAGCCATACGGCAGAATGGTACCTGAGCTGGGTTCCATAGCGACTAAGAGACAGAGAGAGGAAGAAGCTGGAAT
AAAGTCGTCTCAAACGGAAGCAGTGAAGCGACATGAACGAGATGATGCAGCGAGGAGTCTGCAAGACGA-CCCTATAAAT
GGTGCACGGTTGAGGACTTCTCAAAAGAAAAACCTGAGAATGAGCTTGTGAGGGCTTTTAAGTTCGTGGCTGCTGCAATC
CGAGGTTCGGTCAGCCCCAAGATAACGCTATGTGCAGCAGGCCCTATGGGAAACTACATCCTCGCTAGCATACTCGGGCA
TGCATTTGCCACGCATTTGAGTGGAAGAACCTGGAAAGGTAAAATCAAGACAAGGCATTTAGTCATATAAAAAAAAAAGA
ACTTGTGTGCTATCCTATTGAAGACGGTGAAATTGACTTGCGAGGAAGACATGGCCGACGACATCTTAAGTATTATACAA
GCAATTGATCCATTGTACAGGATCAACGGCCATTTACCACCATACTATGCTGAGATGATAGCCAAACTGAAGAAACCGCC
AAGGATATCCAACCCAGATGAACTGAATGCTGAGGAACTAAGCAAATTCCACTTGAAGGTGTTGAAAAGACCTGCTTTCG
CTACACCTGAACTGAGGTCATACGGTGTTCAAGAGTTCTACACCAACACCTTGGACCTGGAATTTGACAATCCTGAATGG
AGGGCCTTTGACAGTTCTGCCCCAGTGCATTTAGAGGACTGGCAGCACATCACCAAGGTTGATGAACTTCTGTTAAAAAA
CTTAATAGAGAGCAGTGGTATGGAGGACAAATTTGGGAAGCAGTGCCATTACATGCGGCATCTTGTGGTGCACTCACCTG
AGGACAAGGAGAAGAAGAAGTATCTATCTGATAACAAAAAGAAGGTACTCGTTTCTTTTTCTACCTGATGAGGAAAACAA
TATTAAATTGTCTGCTTTAACCAATTGACTCACAAATTACAGGCCCATGACCCTTTGGCGGCGTCGGCGAGTCACTCTGG
AGCTCGCCCCCGCTTCCCTCCTCAGCCCACAAGAAAGGTATGGCTATCCTCTACTCTCTCATCTTCCCCTGTCTCACTTC
TCCCCCACTTCCTCTCCAGCTCATAATTTACATTAAATCAGGACGCTCTCCTTCCTGCAATTATGTCTCAAGCTGAAGCG
AAGAAGACAACCCCCAGCAGCTCCTCCGCAGGTCCCCACCCTAAGCCCAAGGTATTGTTCGCATTCCTTTTTCCATCCCT
ATCCCACTGCTCAGTAGGTGCCTGTTTCTAATTGTATTTGTGTAATTGTGCATTAAGGTGTTGTTGATGATGCCGGAGAG
AGACATGCTGGCCCATTATTATTTCAGAGAATTTATGCCTGCATTTGTTGACCTCTTGTACAAAGAGAAGGATAAACAAG
AGTGTCTTCGGGAAATTTGGAACTCTTATGATAGAGGTATTCCCATTGTGGGGTATGTACCTTATGATATGATTCCTGAG
AGATTTCTCGAAGAACTCGAGGAAGACAATGCCAGGTATTCCTTCAAGTTATGTATTGCATTTTTGTGCTGCAACATTCT
GTTTCGGCCATATGTTGTGTTATTTGACATTGAGTTGGTGGAGGTTTCTTACATGTACCAAGATGATGTTTTAATAGCTG
GAATTGTGTTTTTTTAGCTCTGGAGGTGAAAAAGTCATGGAGGTGGACTAGCTGGGAGAAGGAGATCGCTGCCCAGGATA
ACTGATCAAGTTCTTTGTTAGCTAGTATTTTTTGTGATGATACTGAGCTGGGAGAAGGAGGTGGGCTAGCTGGGAGAAGG
CTTTTGCTGCCCATGATAACTGATCAAGTTCTTTGTTAGCTAGTA-TTTTTTTTGTAATGATACTGAGCGAGTGCCGTGT
GGTTTAGCACATCTTTTTATCCCAGTCTCCTAGTTTAGTGGTACCTTAGTGAT-----------ACAGATTGATAGCTTC
CGGAAACTTTCTATTGGTTGATATCTTCTGGAAACCAAGCACGATTGCCTCAGAAAATGCTAAGCTGAGCCCTTTTATGC
TGGTCGTTTGATTGCTGCAAGATTCTAAGGTGGCGTTTGGTTGTGGCTATCCCAGGATGGGATAGGGATAGCCCTTTTTC
TTTGAGGGATAGCAGTTGTTTGGATGAGAGGATAGTGTGGTTGAGGGCAGCCACGATTCCTGAATATTCTCACGAAAAAC
TGGTTGAGGCTGTTCCCGAAAGTCTGGCGGATGGTGGCAACCACCCGTGTTCGCTGCACTCCGATCACCTCCTGCAGCCC
CCAGCATGGGTGATTTTGGAATGCCGGCTGGACTCGGTGAGCGCCGGCGGTAGGTAACGGGCAGTGCCCGCGGCATGGAA
TCGCGAGGCTTCTCTCCTCTCCTTTGTTCTCGTCTATTG
>SNPs
------------------------------S-------------------------------------------------
-------------------------------S---------------S-----------------S--------------
------------------------------------S---------------------------SSSSSS----------
-------------------------------------------------------S------S-----------------
--------------------------------------------------------------------------------
------------------------------S-------------------SS----------------------------
---------------------------------------------S--------------------------------S-
-------------------------S----------S----------S---------S--S-------------------
-------S-----------------------------------------------------------------S------
--------------S-------------------S---S------------------------------S----------
----------------------------------------------------------------S---------------
------------S-----------------------------------------------S-------------------
------S---S----------------------------------S----------------S--------------S--
-------------------------------SS----SS----------------------------S------------
-----------------------------S----------S------------S-------S---------------S--
---S-S-----------------------S------------S-------------------------------------
---------------------------------------------------------------------S----------
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S-------------------------------------------------------------------------------
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----------S---------------------------------------S--------S--------------------
-------------S------------------------------------------------------------------
----S-----S---------------------------------------S-----------------------S-----
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------------------------------------------------------------------S-------------
----------------------------------------------------------------------------S---
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-----S--------------------------------------------------------------------------
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------------------------------------S-------------------------------------------
-SS-S----------------------------------------S----------------------------------
-----------------------------------------------S-S-SSSSSSSSSSSSS----------------
-----------------------------------------S--------------------S-----------------
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----------------S--------------------------------------S------------------------
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--------------------------S----------S--------S-----------S---------S-----------
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>forward_967
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-------------------------------------------------------------------GCATACTCGGGCA
TGCATTC-------------------------------------------------------------------------
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>reverse_2482
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-GCTCGCTGCCCATGATAACT-----------------------------------------------------------
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