>input_sequence_62813
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------------------------------------------------------ATGCTGGTGAGTCACTTGTTCGTGGA
AACATATATAGTAAGTAGCTACAAACAAGAAAC-----------------CAGCAGTGATTAATTTGTTTTCCATGCATG
CCAAATTAATCAATTCATGCAGGAGGACGGAGACGATCTGATCAGCAAGCTACCTGACGAGGTTCTTTTCAATGTCGTCG
GCCGCCTCGATGACATCGACGACGCCGCGAGGACCGGCGTCCTGTCCACGTGGTGGAGGTGGATCCCCGCTATGCTCCCA
AACATTGTCATGTCGGTCGATTCCTTCAAGCCAAAGCACCGCCG------TAGATGGGAGTTGGGACACGAGTACTTAGA
TCGGGCCAAAGCCGACATGATCGAAGCAGCTCGGGCCACAACCGCCATGATCGGAGCAACTCGGGACAGTGCCATCATG-
-------GTCGGAGCAGCTAG--------GAGCATGCTCGGGATGAATAACACCAGAAGCCTTTACGCCATCGACGTCTT
GCACCTAGAGATCTACCTGGGCTACCATTCCGTCTCCATCGGCCCGGCCATCGCCGACGCCATGGCAACGGACAAGATTG
GTCTGGCCAAGTTCACGATCTTGGCCCCGAAGGAGATCTGGCAATGCAG-------------------------------
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--------------------CAACAGTGATCTGTAGGCCTACAGGAGGCAACTCCGGTCATTCGTCGGCGCTTGTTGGAG
CGCATTCGGCGGC--------CTCGTGCACCTCAAGCTACGAAATCTGAGGCTACCAGAT------GACGGCTTGCCCAA
GATCCTGAGCACGTGCAAGTGGCTGCAGTTTCTCATGA-----TGTACAACTGCGACGCGGGGCATCTGTTTGTGCTGGA
GGTGGAGCACCCGCGGCTCGGTGAGCTCGAGATTGTCGACTGCGACTACGACAGAGTCGAGCTCAAGTGGCTGCCAGAGC
TCACGCTCTTCACCGTTTCCCGCTGGATTTCTCCGCATGACCTGGTGTCTTTCGGCCATGTCCCGTTGCTCAGGAGTGTG
AGCATGGCTAATACTTGTCTTACTGAGCATAAGGTGCCTCAGTCTTGTAAAAGTA-TTTGGGAAGCGTAG----------
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>chr3B_1_TraesCS3B01G517200
GAACCACGAGATCGATCCATGGCAACGACGACCGCAAAGGAGAGAGAAAGAGGTGGAGGGGGAGGGGATCTGCGATAGAG
CGGGATGCGGTGGCGGGAGCGACGAAGATCTGATCGAGAAGCAGGAAACCCTAGAAATGGGGGGG-GGGACCCTTGCTAA
CCAACATAAAGCCGGAGCCCGCCAGGCCAGGAGGGTCCTCGCAGGCCGGGCTAGCAAGTGGGGGAGGGGTTGGCTGGGCC
GAGATAGGCCCAGGACCCAGAATAGAGAGAGGGGGAAAGTCACTAGAAGATGAAAGCGGGGGCGGCCCAATTGGCACGAT
CGGCCCAGAGGAGGCCAGAGTGGGTTGGGCAAGGGGCCCACAAGCCTCTTGATCGGAATCAAGAGCTAGGGTTGGACGCG
AGGGAGGAGCGGACACCGCCGCCGCTTGCGGCACCGGACCCGCCCTAGCCGCC-GCGACGAGGACGCCGGGGAGCAAGAC
AAACGCGCCAAATCACCAGCAGGAGCAGGGGCAGCCCCAAGCACACCATGGTCCG-GCGAGGAGTCCGTCCCCGAACGGC
TCCACCAACGAACATGCCCGACCTGGGTCCAGCCAGATCCAGCCGCCGCATCGGAAAAGACCGGCCGTCCACGGCCACCC
GGGGCAAATCTCCGGA-GCGCCCTGCCGGCCCCAACCTCGGCGGTGGCGCCACAGCAGGAGGGAAGGCCATGGCGAGAGG
G-GGAGGTCAGAATCGGAGTCAGCATCATCCTCGTCAGACGACAAGGCCCAGAACTTGTTGCCGGAGCCAGATCCAAGAG
TAGGAGGACAAGGAGGGGAGCA---GGGG---GGTAGGGGAGCATCGAGTGGGAAGGATGGCGCCGGAGAGGAAGCACGG
GGGGAGAGGAAGTGGGGGCGACCCAGAGACGCC---GGCGGGAGCAGGACAGGGAGGATGGGGAGGGCGAGGAGCACGGG
AGAGGGGAGGAGGGGGAGAGGAGAGCCATCAGATAGCGTCCTTCCTACCTAGCCATGCTGGTGAGTCACTTGTTCGTGGA
AACATATATAGTAAGTAGCTACAAACAAGAAAC-----------------CAGCAGTGATTAATTTGTTTTCCATGCATG
CCAAATTAATCAATTCATGCAGGAGGACGGAGACGATCTGATCAGCAAGCTACCTGACGAGGTTCTTTTCAATGTCGTCG
GCCGCCTCGATGACATCGACGACGCCGCGAGGACCGGCGTCCTGTCCACGTGGTGGAGGTGGATCCCCGCTATGCTCCCA
AACATTGTCATGTCGGTCGATTCCTTCAAGCCAAAGCACCGCCG------TAGATGGGAGTTGGGACACGAGTACTTAGA
TCGGGCCAAAGCCGACATGATCGAAGCAGCTCGGGCCACAACCGCCATGATCGGAGCAACTCGGGACAGTGCCATCATG-
-------GTCGGAGCAGCTAG--------GAGCATGCTCGGGATGAATAACACCAGAAGCCTTTACGCCATCGACGTCTT
GCACCTAGAGATCTACCTGGGCTACCATTCCGTCTCCATCGGCCCGGCCATCGCCGACGCCATGGCAACGGACAAGATTG
GTCTGGCCAAGTTCACGATCTTGGCCCCGAAGGAGATCTGGCAATGCAG-------------------------------
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--------------------CAACAGTGATCTGTAGGCCTACAGGAGGCAACTCCGGTCATTCGTCGGCGCTTGTTGGAG
CGCATTCGGCGGC--------CTCGTGCACCTCAAGCTACGAAATCTGAGGCTACCAGAT------GACGGCTTGCCCAA
GATCCTGAGCACGTGCAAGTGGCTGCAGTTTCTCATGA-----TGTACAACTGCGACGCGGGGCATCTGTTTGTGCTGGA
GGTGGAGCACCCGCGGCTCGGTGAGCTCGAGATTGTCGACTGCGACTACGACAGAGTCGAGCTCAAGTGGCTGCCAGAGC
TCACGCTCTTCACCGTTTCCCGCTGGATTTCTCCGCATGACCTGGTGTCTTTCGGCCATGTCCCGTTGCTCAGGAGTGTG
AGCATGGCTAATACTTGTCTTACTGAGCATAAGGTGCCTCAGTCTTGTAAAAGTA-TTTGGGAAGCGTAGAACCCTTTGT
CTCGGGCCGCATGTATATATTATGCAAA-GCCTTGGCATACAAGTTACAGGAGGAGATCGAGGGAACGATCA--GGAGAT
CGACCAGGACGGTCGTTACAAGGAGATGAG----AAAGAGAAGAAAGGATAGAGATGAAGTACATAATTTAAACAAACTT
CTATCCCAATACAACTCC---TATACG--TCTATTCCAACAC-----TCCCCCTCAATCTAGACCTCAAGGAGCTTTGCC
AAGGTTAAGATTGTAATTAAATTCATTCAACCTTCTCTCTGTAAGGGGTTTTGTAAACCCATCTACGAGTTGATCTCCTC
T-GGGATAAACCGAATCTCCAGAAGCTTTCGAGCTAATCTTTCTCTGACAAAATGGAAATCAACTTCAATTTGTTTTGTT
TGTGCATGAAAAATAGGATTTGCTGAGAGATACGTTGCACCAATATTATCACACCATAACCTCGCAGCCTGTGGAGTTTT
AGCTCCAAGTTCATAAAGTAATGTTTGTATCCACATCACTTTAGCTGTAGCATTAGCCAGGGCCTTATATTCAGCCTCTG
TGCTTGACCTAGAAACCGTGGCCTGTTTTCTTGCACTCGATGACACAAGGTTAGTTCCCAGAAACACAACAAAACCACCT
GTAGATCTTCTATCATCAGCACACCCTGCCCAGTCAGCATCAGAGTATGCAGTAACAAGCATAGAAGAAGACTTGGTAAT
GTTGAGACCAAGACCTTCTAAGAACTTGAGATACCTTAGAATTCTTTTGACTGCAGTCCAATGAGTAGTTCTACGTGCAT
GTAAATATTGGCATACCTTGTTTACTGAATAAGATATATCAGGACGAGTGAGTGTTAAGTACTGCAAGGCACCTACAACA
CTCCTATAGTTTGTTGCATCCTCTGGTCCAAGAACTTCTCCACTTTCCACTGTAAGCCTTTCTGAGGTAGAA-TTGGTGT
GTTAACTGGCTTGCAGTTTTCCATTCCTACTCTCCTGAGAATATTAGTT
>chr1B_1
GAACCACGAGATTGATCCATG--AACGACGGTCGCGAAGGAGAGAGAAAGAGGTGGAGGGGGAGGGGATCTGTGGTAGAA
TGGGATGCGGTGGCGGGAGCGACGAAGATCTGAGCGAGAAGCAGGAAACCCTGGAAATGGGGGGGCGGAACCCTTGCGAA
CCCATATAAAGCCGGAGCACGCCAGGCCAGGAGGGGCCTCGCAGGCCGGGCTAGCAAGTGGGGGAGGGGTTGGCTGGGCC
GAGATAGGCCCAGGGCCTAGAATACAGAGAGGGGGAAAGTCGCTAGAATACGAAAGCGGGGGCGGCCCAATTTGCACAAT
CGGCCTAGAGGAGGCCAGAGTGGGTCGGGCAAGGGGCCCACAAGCCTCCTGATCGGGATCACGAGCTAGGGTTGGACGCG
AGGGAGGAGCGGACGCCGCTGCCGCCAGCGGCCCTGCACCCGACCTAACCACCGGCGATGAGGACGCTGGGGAGCAAGAC
GAACGCACCAAACCACCAGTAAGAGCAGGGGCAGCCCCAAGCACACCACGGTCCG-GCGAGGAGACCATCCCCGAACGGC
TCCGCCGACGAACACGTCAGAACTGGGTCCAGCCAGATCTAGCTGCCACATCGGAGAAGACGGGACATCCACGGCCACCC
GGGACAAATTTCCGGACGCACCCCGCCGGCCCCAACCTCAGCGGCGGCGCATG-GCAGGAGGGAAGGCCACGGCGAGAGG
GAGGAGGTCAGAATCGGAGTCAGCATCATCCTCGTCAGACGACAAGGCCCAGAACTTGTTGCCGGAGCCAGATCCAAGAG
TAGGGG--CAAGGAGGGGAGCAGTGGGGG---AGTAGGGGAGCATCGAGCAGGGAGGCCGGCGCCGGAGAGGAAGCACGG
GGGCGACCTAGGT---------------ACGCC---AACGGGAGCAGGACGGGGAGGATGGGGAGG---AGGAGCACGGG
AGAGGGGAGGAAGGGGAGAGGAGAGCCATC--------------------------------------------------
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>chr1D_1
GAGCCACGTGATCGATCCATGGCAACGACGGCCGTGAAGGAGAGGGAAAGAGGTGGAGGGGGAGGGGATCTGCGGTAGAG
CGGAATGTGAAGGCGGGAGCGACGAAGATATGAGAGAGAAGCAGGAAACCCTAGAAATGGGGGGG-GGAACCCTTGCGAA
CCCATATAAAGCCGGAGCACACCAGGCCAGGAGGGGCCACGCAGGCCGGGCTAGCAAGTGGGGGAGGGGTTGGCTGGGCC
GAGATAGGCCCAGAGCCCAGAATAGAGAGAGGGGGAAAGTCACTATAAGACGAAAGCAGGGGCGGCCCAATTGTCACGAT
CGGCCCAGAGGGGGCCAGGTTGGATCGAGCAAGGGGCCCACAAGCCTCCTGGTCAGGATCACAAGCTAGGGTTGGACGCG
AGGGAGGAGCGGACGCCGCCGCCGCCAGCAGCACCGTACCCAACCTAGCCACCGGCGACGAGGACGCAGGGGAGCAAGAC
AAACACGCCAAACCACCAGCAGGCACAGGAGCAG-CCCAAGCACACCACGGTCCGCGCGAGGAGACCTTTCCCGAACGGC
TCCGCCGATGAACACACCCGACCT----------AGATCCAGCCGCCGCATCAGAGAAGACCGGCTGCCCGTGCCCACCC
AGGGCAAATTTCCGGACGCGCCCTGCCGGCCCCAACCTCAGCGGCGGCGCCACAACAGGAGGGGAGGCCATGGCGAGAGG
GGGGATGTCGGAATCGGGGTCAGCTTCATCCTCGTCTGACGACAAGGTCCAGAACTTGTTGCTAGAGCCAGATCCAAGAG
TAGGGGGGCGAGGAGGGGAGCAATGGGAGGGAAGTAGGGGAGCACCGAACGGAGAGGCCGGCGCCAGAGAGGAAGCACGG
CGGGAGAGGAGGCGGGGGCGGCCCGGGGACACCGGAGGGGGCAGGACGACGGGGTGGATGGGGAGG---AGGAGCACGGG
AGAGGGGAGGAGGGGAAGAGGAGAGCCATC--------------------------------------------------
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>chrUn_989
TCCTC---------------------------------------------------------------------------
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-----------------------------------------------CCTAGCCATGCTGGTGAGTCACTTGTTGGTCGA
AACATATA------GGAGCAACGAACAAGAAAC-----------------CAGCTCGGATTAATCTGTTTTCCATGCATG
CCAAATTAATCAATGCA----GGAGGATGGAGACGATCAGATCAGCAAGCTGCCCGACGAGGTTCTGGTCAACATCGTCG
GCCGCCTCGATGACATCGCCGACTCCGCGCGGACCGGCGTCCTGTCCACGGGGTGGAGGCGGATCCCCGCTATGCTCCCA
AGCATCGTCATGTCGGTCGATTCCTTCAAGCCGAAGCACCACCG------CAGACGGGAGTTGGGACACGGGTACGCAGA
TCGGGCCAAAGCCAACATGATCGAAGCAGCTCGGGCCAAAACCGCCATGATCAGATCAGCTCGGGCCAATGCCGTCATGA
ACTCATGATCGAAGCAGCCAA--------GAGCATACTCGGAGGAAATAAGGCCAGAGGCCTGTACGCCATCGACGTCCT
TCGCCTGGAGTTCTACCTGGCGGACGACTCCGTCTCCATTGGCCGGGCCGTCGCCGACGGCATGGCGACGCACAAGGTCG
GTCTGGCCGAGTTCACGATCTTGACCCCGAAGGAGATATGGCAATGCAGCTTCAAACGTACGCAACGCTCCTGAGCAGCC
AGCCACGCCTACGTGCCTGGGCCTCGTCCCGGACACGCTGCCGGCTCGGACAGCCCCGCTTGCATGCTTCCCCATGCTCT
CATTCATGCTCCCACTTTATCCTATGGCTGTTTTTTTCTCCTTTTTCCTTTCTAATCTAATCATCCCCTGATTTTAAGGG
GGTGAGGCCGGGCCTTATTTTGTTCCAATCAAATTAAGCCACGTATGCGGGAGCACGGATGGGCGCACGCCCCGGGAGCA
GGCAAGTCTCGTCCGATTGCAAGTCCTGTTGCCACACGTTACGGGAGCTCCTATTCAACGTGTTTTGCGTCGAACAGTCG
AGCAAACGCACAGACGACGACGCTATGTTAGGCCGGCCCATTTGCGGGTGCGGTAGCAAACGGCGCAAACTGAAAATCCC
GCAAAAAATGAAGTGAGCTAGATAGGGATTGAACTCCAGCCCTCCCGCTCGTGAGCGCATGCAGATAGGCAGATGACGAC
ATTCGTTGTCTAGTCCACAACCCGAAATATTGAAAAACTAACATCAGCGCCAGATTCTGAAACATTTTTTGAAAACTCTA
ACTGCAAACAATTTTGTACTGTAGCGCCTGGAACTGTAGCTGACTTTTTTTTAATTCCGAATAATTTTTCAAATTTGCAA
AAATTTCTGAATTTTTGAACAAAATTTGAAAACGGGAACGTTTTTCGTAAAGGCATCTGCATTTTTATAAATTTTGAAAC
AAAATTGAAAACAGGAAATTCGAACTTCTGAACAATTTTTTAATAGCAACAACATTTTTTAAATTCTCAAACAAATTTTG
AATTTCTGGACAAAATTTTAAAAAGGGAATATTTTTCGTAAAAGCACGAACATTTTTTAAATTTCTGAAACAAAGTTGAA
AACAGGAACAATTTTCAAACTTCTGCACAATTTTTGAAAAAGCACAAACATTTTTTGAATTTCTGAACAAAATTCGAAAG
CGGAAATATTTTTTGAAACCTTAAACAATATATGATAAATGCAAACATTTTTTGAAATTTACGAATATTTTTCCAAAAAC
ACAAACATTTTTTGGGGAAATAAAAATAAAACGAAAAAGGAAAAAATAAAAAGAAAAAAAGAAAAAAGGAGAGGAAGAAA
AAAAAGAAACATGAAAAAAGAAAAAAAAGAAAATAAAACAGAAAAATAAGAAATAAAAAGGAAAATAGAAAACCAGCTTA
AGGAACCTTCTAGAAGGTTCCAAAAACCTATAAAAACCGGCTGGGAAACTTCTAGAAAGTTCCCAAAACCGAAACTGGAA
GATGGGCCGGCCCATCTGATTTGCTCCCTATGCGTTTGCTCGATATTTTGACACAACGAGCGTCCAATAGGAATTTACGC
ACGTTACGCCGTCGCCGCTCCATGATTCAGGAGACGCTCGCCCAATCGATCTATCGCCGCACGTCGCACGTGCTGCTTGC
ACGCGTCTGACCGCCGCATGCTCGCCCGATCGATCCTGTTGATCCATCGCTGCACGTCCAGCCTTGTCTGCGCACGAGCC
TCCCACTGATCTGCTTTCTTCCGATCTCGTCAAGAACCACGCTGATAGCCGGCTGCATCTTGGACTCGATCCTTCGTCTA
AATTAACGATCCGCATCCTCCGAAACAATTTAGCTCATGATATCACTTGTTAAAATAAATCCGAGGCTACCGTCGATCAT
CCGAAGACCAAGCAATCATATGAGCACAACACCGAGATTTGTTAACGAGGTTTACCGATATGGCTACATCCCCGGGCCTG
ACTATGGGCGCTCTTCCCCATAATACCGCTACAATACCCTACCCCGCCGCCCGGGCACCGGCACACGCCGCCGGCTCCCC
CGCGTTCCTGTGCTATTATGTTGGCATAGGTTACATCATGTGTCTACTCTCATTATATATGAGAGGCCTAGAATATAGTC
TTTCTAGGACACGACTCGATATCCTATCTAAACACAATACAAATATAAGTCTAAGTCTAACATACTTTATATACAATATT
CGACACAATGCTAACAGCAGCAACATTGATCTGCTGGCCTACGGGAGGCAGCTCCGGTCGTTCGTCGGCGCTTGTCGGAG
TGCATTCGGTGGC--------TTCGCGCGCGTCAAGCTGCAAAATCCGAGGCTACCAGAT------GACGGCTTGCCCAA
GATCCTGAGCACGTGCAAGCAGCTGGAGTTTCTCAGGC-----TGTACAACTGCGACGGGGGGCATCTGTTTGTGCTGGA
GGTGGACCACCCGCGGCTCGGCGAGCTCGAGATCATCGACTGCGACTTCGAGAGGGTGGAGCTCAAGTGGCTGCCGGAGC
TC------------------------------------------------------------------------------
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>chr3B_994
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-----------------------------------------------CCTAGCCATGCAGGCGAGTCACTTGTTCGTGGA
AACATATA------GTAGCAACGAACAAGAAACATATAGTAGCAACGAACCAGCTCTGATTAATTTGTTTTCCATGCATG
CCAAATTAATCAATGCA----GGAGGATGGAGACGATCAGATCAGCAAGCTGCCTGACGAGGTTCTGGTCATCATCGTCG
GCCGCCTTGATGACATCGCCGACTCCGCGCGGACCGGCGTCCGGTCCACGCGGTGGAGGCGGATCCCCGCTATGCTCCCA
AGCATCGTCATGTCAGTCGATTCCTTCAAGCCAAAGCACCACCG------CAGACGGGAGTTGGGACACGGGTACGCAGA
TCGGGCCAAAGCCGACATGATCGAAGCAGCTCGGGCCAAAACCGCCATGATCGGATCAGCTCGGGCCAATGCCGTCATGA
ACTCATGATCGAAGCAGCCAAGAGCCCAAGAGCATACTCGGAGGAAATAAGGCCAGAAGCCTGTACGCCATCGACGTCCT
TCGCCTGGAGTTCTACCTGGCGGACGACTCAGTCTCCATTGGCCGGGCCGTCGCCGACGCCATGGCGACGGGCAAGGTCG
GTCTGGCCGAGTTCACGATCTTGACCAAGAAGGAGATCTGGCAATGCAGC------------------------------
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---------------------AAGTGGGATCTGCTGGCCCACGGGAGGCAGCTCCGGTTGTTGGTCGGCACTTATCCGAG
CGCATTCGGCCTTTCGGCGGTCTCGCACGCCTCAAGCTGCAAAATCTGAGGCTACCTGATATATCAGACGGCTTGCCCAA
GATCTTGAGCACGTGCAAGCGGCTCGAGTACCTCAGAC-----TGTACAACTGCGACGCGGGTCACATGTCGCTGCTGCA
GGTGGAGCACCCGCGGCTCGGTGAGCTCGAGATTGTCGACCGCGACTTCGAGAGGGTGGAGCTCAAGTGGCTGCCGGAGC
TCGCGCTGCTCATCGTTTCCCGCTGGATCTCTCCGCATGACCCGATGTCTTTCGGCCATGTCCCGTTGCTCAGGAGCGTG
AGCATGGCTAATACTTGTCTTACTGAGCATAAGGTGGTCAGTCT------------------------------------
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>chr3A_1252
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--CATCGTCATGTCGGTTGATTCCTTCAAGCCGAAGCACCACCGCAGGCCCAGGCCGGAGTTGCGCCACGAGTACGCAGA
TCGAGCCAATGCCGCCATGATCGAAGCGGCTCGGGCCAATGCCGCCATGATCGGAGCAGCTCGGGCCAATGCCGCCATG-
-------ATCGGAGCAGCCAG-----------------------GAATAAGACTAGAAGCCTTTACGCCATCGACGTCCT
GCGCCTGGAGTTCTACCTGGGCGACCATTCCGTGTCCATTGGCCGGGCCGTCGCCGACGCCATGCCGACGCACAAGGTCG
CTCTGGCCGTGTTCACGATCTTGACCCCGAAGGAGATCTGGCAATGCAGC------------------------------
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---------------------AACAGTGATCTGCTGGCCTACGGGAGGCAGCTCCGGTCGTTCGTCGGTGCTTGTCGGAG
CGCATTCGGTGGC--------ATCGCGCGCCTCAAGCTGCAAAATCTGAGGCTACCAGAT------GACGGCTTGCCCAA
GATCCTGAGCACGTGCAAGCGGCTAGAGTTTCTCATGCTGTTGTGTACAACTGCGACGCGGGGCATCTGTCTGTGCCGCA
GGTGGAGCACCCGCGGCTCAGCGAGCTCAAGATCGTCGACTGCGACTTCGAGAGGGTGGAGCTCTAGTGGCTGCCGGAGC
TCACGCTGCTCACCGTTTCCCGCTGGATCTCTCCGCATGACCCGGTGTCTTTCGGCCATGTCCCGCTGCACAGAAGCGTG
AGCATGGCTAATACTTGTCTTACTGACCACAAGGTGCTCAGTCT------------------------------------
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>chr2B_2001
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-------------------------------------------CTTGTAAAAGTA-TTTGAGAAGCGTAGAACCCTTTGT
CTCGGGCCACATGTATATATTGGGCAAAAGCCTTGGCATACAAGTTACAGG-GTAGATCGAGAGAACGATCA--GAAGAT
CCACCAGATCGGTTGTTACAAGGAGATGAG----AACGAGAAGAAGGGATAGAGATGAAGTATAGAATTTAAACAAACTT
CTATCCCTATACAACTCC---TAAACG--TCTATTCCAACAC-----TCCCCCTCAATCTATACCTCAAGGAGCTTTGCC
AAGGTTAAGATTGTACTTAAATTCATTCAACCTTCTCTTGGTAAGGGGTTTTGTAAACCCATCTGCGAGTTGATCTCCTG
TGGAAATAAACCGAATCTCCAGAAGCTTTCGAGCTACTCTTTCTCTGACAAAATGGAAATCAACTTCAATGTGTTTCGTT
CGTGCATGAAAAACAGGATTTGCTGAGAGATACGTTGCACCAATATTATCACACCATAATCTCGCAGCCTGTGGAGTTTT
AACTCCAAGTTCATAGAGTAATGTTTGTATCCACATCACTTCAGCTGTAGCATTAGCCAGGGCCTTATATTCAGCCTCTG
TGCTTGACCTAGAAACCGTGGCCTGTTTTCTTGCACTCCATGACACAAGATTAGTTCCCAGAAACACAGCAAAACCACCT
GTAGATCTTCTATCATTAGCACACCCTGCCCAGTCAGCATCAAAGTATGCACTAACAAGCATAGAAGAGGACTTGGTAAT
GTTGAGGCCAAGACCTTCTGAGAACTTGAGATACCTTAGAATTCTTTTGACTGCAGTCCAATGAGTAGTTCTAGGTGCAT
GTAAATATTGGCATACCTTGTTTACTGAATAAGATATATCAGGACGAGTGAGTGTTAAGTACTGCAAGGCACCTACAACA
CTCCTATAGTTTGTTGCATCCTCTGGTCCAAGACCTTCTCCACTTTCCACTGTAAGCCTCTCTGAGGTAGAAATTGGCGT
GTTAACTGGCTTACAATTCCCCAATCCTACTCTCCTGAGAATATCAGTT
>chr2B_2001
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-------------------------------------------CTTGTTAAAGTA-TATGGGAAGCGTAGAACCCTTTGT
CTCGGGCCACATGTATATATTGGGCAAA-GCCTTGGCATACAAGTTACATG-GGAGATCGAGAGAACGATCA--CGAGAT
CGACCAGGACAGTCGTTACAAGGAGATAAG----AAAGAGAAGAAGGGATAGAGAAGAAGTACATAATTTAAACAAACTT
CTATCCCTATACAACTCC---TATACG--TCTATTCCAACACCCCCCCCCCCCTCAATCTAAACCTCA---AGCTTTGCC
AAGGTTAAGATTGTACTTGAATTCATTTAACCTTCTCTCAGTAAGGGGCTTTGTAAACCCATCTGCGAGTTGATCTCCTG
TGGGAATAAACCGAATCTCCAGAAGCTTTCGAGCTACTCTTTCTCTGACAAAATGGAAATCAACTTCAATGTGTTTTGTT
CGTGCATGAAAAACAGGATTTGCTGAGAGATACGTTGCACCAATATTATCACACCATAATCTCGCAGCCTGTGGAGTTTT
GACTCCAAGTTCATAGAGTAATGTGTGTATCCACATCACTTCAGTTGTAGCATTAGCCAGGGCCTTATATTCAGCCTCTG
TGCTTGACCTAGAAACTGTGGCATGTTTTCTTGCACTCCATGATACAAGATTAGTTCCCAGAAACACAGCAAAACCACTT
GTAGATCTTCTATCATCAGCACAGCCTGCCCAGTCAGCATCAGAGTATGCAGTAACAAGCATAGAAGAGGACTTGATAAT
GTTGAGGCCAAGACCTTCTGAGAACTTGAGATACCTTAGAATTCTTTTGATTGCAGTCCAATGAGTAGTTCTAGGTGCAT
GTAAATATTGGCATACCTTGTTTACTGAATAAGATATATCAGGACGAGTGAGTGTTAAGTACTGCAAGGCACCTACAACA
CTCTTATAGTTTGTTGCATCCTCTGGTCCAAGAACTTCTTCACTTTTCACTGTAAGCCTTTCTGAGGTAGAAATTGGCGT
GTTAACTGGCTTACAATTTTCCAATCCTACTCTCCTGAGAATATCAGTT
>chr2B_2002
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--------------------------------------------TTGTAAAAGTGTTTTGGGAAGCGTAGAACCCTTTGT
CTCGGGTCGCATGTATATATTGGGCAAA-GCCTTGGCATACAAGTTTACAG-GAG------GAGATCGATCAGATGGGAC
CGACCAGATCGGTCGTTACAGGGAGATC--GAGAG-GCAGAAGAAAGGATAGA-ACAGAATACAGAATTTAAACAAACT-
CTATCCCTATACAACTTCTACTACACG--TATATTCTAACAC-----TCCCCCTCAATCTTAACCTCAAGGAGCTTTGCC
AAGGTTAAGATTGTACTTGAAATCATTCAACCTTCTTTCAGTAAGAGGTTTTGTAAAACCATCTGCGAGTTGATCTCCTG
TGGGAATAAACCGAATCTCCAGAAGCTTTCGAGCTACTCTTTCTCTGACAAAATGGAAATCAACTTCAATGTGTTTTGTT
CGTGCATGAAAAACAGAATTTGATGAGAGATACGTTGCACCAATATTATCACACCATAATCTCGCAGCTTGTGAAGTTTT
AACTCCAAGCTCATAAAGTAATGTTTGTATCCACATCACTTCAGCCGTAGCATTAGCCAGAGCCTTATATTCAGCTTCTG
TGCTTGACCTAGACACTGTGGCCTGTTTTCTTGCGCTCCATGACACAAGATTAGTTCCCAGAAATACATCAAAACCACCT
GTAGATCTTCTATCATCAGCACACCCTGCCCAGTCAGCATCAGAGTATGCAGTAACAAGCATAGAAGAGGACTTGGTAAT
GTTGAGATCAAGACCTTCTGAGAACTTGAGATACCTTAAAATTCTTTTGACTGCAGTCCAGTGAGTGGTTCTAGGTGCGT
GTAAATATTGACATACCTTGTTCACTGAATAAGATATATCAGGACGAGTGAGAGTTAAATACTGCAAGGCACCTACAACA
CTCCTATAGTTTGTTGCATCCTCTAGTCCAAGAACTTCTCCACCTTCCACTGAAAGCTTCTCAGAGGTAGAAATTGGTGT
GTTAACTGGCTTGCAATTTTCAAACCCTACTCTCCTGAGAATATCAGTT
>chr2B_2003
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---------------------------------------------TGTAAAAGTA-TTTGAGAAGCGTAGAACCCTTTGT
CTCGGGCCACATGTATATATTGGGCAAAAGCCTTGGCATACAAGTTACAGG-GGAGATCGAGAGAACGATCA--GAAGGT
CGACCAGATCGGTCGTTACAAGGAGATGAG----AACGAGAAGAAGGGATAGAGATGAATTACAGAATTTAAACAAACTT
CTATCCCTATACAACTCC---TAAACG--TCTATTCCAACAC-----TCCCCCTCAATCTAAACCTCAAGGAGCTTTGCC
AAGGTTAAGATTGTACTTAAATTCATTCAACCTTCTCTTGGTAAGGGGTTTTGTAAACCCATCTGCGAGTTGATCTCCTG
TGGAAATAAACCGAATCTCCAGAAGCTTTCGAGCTACTCTTTCTCTGACAAAATGGAAATCAACTTCAATGTGTTTCGTT
CGTGCATGAAAAACAGGATTTGCTGAGAGATACGTTGCACCAATATTATCACACCATAATCTCGCAGCCTGTGGAGTTTT
AATTCCAAGTTCATAGAGTAATGTTTGTATCCACATCACTTCAGCTGTAGCATTAGCCAGGGCCTTATATTCAGCCTCTG
TGCTTGACCTAGAAACCTTGGCCTGTTTTCTTGCACTCCATGACACAAGATTAGTTCCCAGAAACACAGCAAAACCACCT
GTAGATCTTCTATCATCAGCACACCCTGCCCAGTCAGCATCAAAGTATGCACTAACAAGCATAGAAGAGGACTTGGTAAT
GTTGAGGCCAAGACCTTCTGAGAACTTGAGATACCTTAGAATTCTTTTGACTGCAGTCCAATGAGTAGTTCTAGGTGCAT
GTAAATATTGGCATACCTTGTTTACTGAATAAGATATATCAGGACGAGTGAGTGTTAAGTACTGCAAGGCACCTACAACA
CTCCTATAGTTTGTTGCATCCTCTGGTCCAAGACCTTCTCCACTTTCCACTGTAAGCCTCTCTGAGGTAGAAATTGGCGT
GTTAACTGGCTTACAATTCCCCAATCCTACTCTCCTGAGAATATCAGTT
>chr1B_2003
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---------------------------------------------TGTAAAAGTGTTTTGGGAAGCGTAGAACCCTTTGT
CTCGGGCCGCATGTATATATTAGGCAAA-GCCTTGGCATACAAGTTACAAGAGGGGATCGATGGAACGATCA--GGAGAT
CGACCAGATCGGTCGTTACAAGGAGATCAG----GAACAGAAGAAAGGATAGA-AT-GAATACAGAATTTAAACAGACTT
CTATCCCTATACAACTCC--CTATACG--TATATTCCAACAC-----TCCCCCTCAATCTAAACCTCGAGGAGCTTTGCC
AAGGTTAAGATTGTACTTGAAATCATTCAACCTTCTTTCGGTAAGAGGTTTTGTAAAACCATCTGCGAGCTGATCTCGTG
TGGGAATAAACCGAATTTCCAGAAGCTTTCGAGCTACTCTTTCTCTGACAAAATGGAAATCAACTTCAATGTGTTTTGTT
CGTGCATGAAAAACAGGATTTGCTGAGAGATATGTTGCACCAATATTATCACACCATAATCTCGCAGCCTGTGGAGTTTT
AACTCCAAGCTCATAAAGTAATGTTTGTATCCACATCACTTCAGCTGTAGCATTAGCCAAGGCCTTATATTCAGCCTCTG
TGCTTGACCTAGAAACTGTGGCCTGTTTTCTTGCACTCCATGACACAAGGTTAGTTCCCAGAAATACAGCAAAACCACCT
GTAGATCTTCTATCATCAGCACACCCTGCCCAGTCAGCATCAGAATATGCAGAAACAAGCATAGAAGAAGACTTGGTAAT
GTTGAGACCAAGACCTTCTGAGAACCTGAGATACCTTAAAATTCTTTTGACTGCAGTCCAGTGAGTGGTTCTAGGTGCAT
GTAAGTATTGACATACCTTGTTCACTGAATAAGATATATCAGGACGAGTGAGTGTTAAATACTGCAAGGCACCTACAACA
CTCCTATAGTTTGTTACATCCTCTGGTCCAAGAACTTCTCCACCTTCCACTGAAAGCTTTTCAGAGGTAGAAATTGGTGT
ATTAACTGGCTTGCAATTTTCCAATCCTACTCTCCTGAGAATGTCAGTT
>chr7A_2003
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---------------------------------------------TGTAAAAGTA-TATGGAAAGCGTAGAACCC-TTGT
CTCGGGCCGCATGTATATATTGGGCAAAAGCCTTGGCATACAAGTTTACAG-GAAGATCGAGAGAACGATCA--TGAGAT
CGACCGGGGCGGTCGTTATAGAG-GATAAG----G-AGAGAAGAGGAGATAGAGATAGAGTACAGAATTTAAACAGACTT
CTATCCTTATACAACTCC---TATACCCATCTATTCTAACAC-----ACCCCCTCAATCTAAACCTCAATGAGCTTTGCC
AAGGTTAAGATTGTACTTAAATTCATTCAACCTTCTCTCTGTAAGAGGCTTGGTAAACCCATCTGCAAGCTGATCTCCTG
TGGGAATAAACCGAATCTCCAGAAGCTTTCGAGCTACTCTTTCTCTAACAAAATGGAAATCAACCTCAATGTGTTTTGTC
CGTGCATGGAAAACAGGATTTGCTGAGAGATACGTTGCACCAATATTATCACACCATAATCTCGCAGCCTGTGGAGTTTT
AACTCCAAGCTCATAGAGTAACGTTTGTATCCACATCACTTCAGCTGTAGCATTTGCCAGAGCTTTATATTCAGCCTCTG
TGCTTGACCTAGAAACTGTGGCCTGTTTTCTTGCACTCCATGACACAAGATTAGTTCCCAGAAACACAGCAAAACCACCT
GTAGATCTTCTATCATCAGCACATCCTGCCCAGTCAGCATCAGAGTATGCAGTAACAAGCATAGAAGAGGATTTGGTAAT
GTTAAGACCAAGACCTTCTGAAAACTTGAGATACCTTAAAATTCTTTTAACTGCAGTCCAATGAGTAGTTCTAGGTGCAT
GTAAATATTGGCATACCTTGTTTACTGAATAAGATATATCAGGACGGGTGAGTGTTAAGTACTGCAAGGCACCTACAACG
CTCCTATAATTTGTTGCATCTTCTGGTCCAAGAACTTCTCCACTTTCCACTGTAAGCTTTTCTGAAGTAGAAATTGGAGT
GTTAACTGACTTACACTTTTTCAATCCTACTCTTCTGAGGATATCAGTT
>chrUn_2003
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---------------------------------------------TGTAAAAGTGTTTTGGGAAGCGTAGAACCCTTTGT
CTCGGGCCGCATGTATATATTGGGCAAAAGCCTTGGCACACAAGTTTACAGAGGG-----AGAGATCGATCAGATGGGAT
CGATCAG----GTCGTTACAGAAAGATCGTGAGAG-ACAGAAGAAGAGATAGA-ACAAAATACAAAGTTTAAACCAACT-
CTATCCCTATACAACTTCTACTACACG--TATATTCCAACAC-----TCCCCCTCAATCTAAACCTCAAGGAGCTTTGCC
AAGGTTAAGATTGTACTTGAAATCATTCAACCTTCTTTCAGTAAGAGGTTTTGTAAAACCATCTGCGAGTAGATCTCCTG
TGGGAATAAACCAAATCTCCAGAAGCTTTCGAGCTACTCTTTCTCTGACAAAATGGAAATCAACTTCAATGTGTTTAGTC
CGTGCATGAAAAACAGGATTTGTTGAGAGATACGTTGCACCAATATTATCACACCATAATCTCGCAGCTTGTGGAGTTTT
AACTCCAAGCTCATAAAGTAATGTTTGTATCCACATTACTTCAGCTGTGGCATTAGCCAGAGCCTTATATTCAGCCTCTG
TGCTTGACCTGGACACTGTAGCCTGTTTTCTTGCACTCCATGACACAAGGTTAGTTCCCAGAAATACAGCAAAACCACCT
ATAGATCTTCTATCATCAGCACACCCTGCCCAGTCAGCATCAGAGTATGCAGTAACAAGCAGAGAAGAGGACTTGGTAAT
GTTGAGACCAAGACCTTCTGAGAACTTGAGATACCTTAAAATTCTTTTGACTGCAGTCCAATGTGTGGTTCTAGGTGCAT
GTAGATATTGACATACCTTGTTCATTGAATAAGATATATCAGGACGGGTGAGAGTTAAGTACTGCAAGGCACCTACAACA
CTCCTATAATTTGTTGCATCCTCTGGTCCAAGAACTTCTCCACCTTCCACTGTAAGCTTCTCAGAGGTAGAAATCGGTGT
GTTAACTGGCTTGCAATTTTCCAACCCTACTCTCCTGAGAATATCAGTT
>chr5A_2007
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-------------------------------------------------AAAGTA-TTTGGGAAGCATAGAACCCTTTGT
CTCGGGCCGCATGTATATATTGGGCAATAGCCTTGGTATACAAGTTACAGG-GGAGATCAAGAGAATGACCA--GGAGAT
CGACCAGGACGGTCATTACAATGAGATTAG----A-TGAGAAGAAGGGATAGAGATGAGATACAAAATTTAAACAAACTT
CTATCCCTATACAACTCC---TATGCG--TCTATTCCAACAC-----CCGCCCTCAATCTAAACCTCAAGGAGCTTTGCC
AAGGTTAAGATTGTACTTAAATTCATTCAACCTTCTCTCGGTAAGGGGCTTTGTAAACCCATCTGCGAGTTGATCTCCTA
TGGGAATAAACCGTATCTCAAGAAGCTTTCGAGCTACTCTTTCTCTGACAAAATGAAAGTCAACTTCAATATGTTTTGTC
TGTGCATGAAAAACAGGATTTGCTGAGAGATACGTTGCACCAATATTGTCAAACCATAACCTCACAGCCTGTGGAGCCTT
AATTCCAAGCTCATAGAGTAATGCTTGTATCCACATCACTTCAGCTGTAGCATTAGCCAAGGCCTTATATTCAACCTCTG
TGCTTGACCTAGAAATAGTGGCTTGTTTTCTTGCACTCCATGACACAAGATTAGTTCCCAGAAACACATCAAAACCACCT
GTAGACCTTCTATCATCAGCACACCCTGCCCAGTCTACATCAGAATATGCAGTAACAAGCATAGAAGAGGACTTGGTAGT
GTTAAGTCCAAGACCTTCTGAGAACTTGAGATACCTTAGAATTCTTTTGACTGCAGTCCAATGAGTAGTTCTAAGTGCAT
GTAAATACTGGCATACCTTGTTTACTGAATAAGATATATCAGGATGAGTGAGTGTTAAGTACTGCAAATCACCTACAACA
CTCCTATAATTTGTTGCATCCTCTGGTCCAAGAACTTCTCCACTTTCCACTGTAAGCTTTTCTGAGGTAGAGATTGGCGT
GTTAACTGGCTTACAATTTTCCAATCCTACTCTCCTGAGAATATCAGTT
>chr5B_2009
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---------------------------------------------------AGTA-TTTGGAAAGCGTAGGACCCTTTGT
CTCGGGCCGCATGTATATATTAGGCAAA-GCCTTGGCATACAAGTTACAGGAGGAGATTGATGGAACGATCA--GGAGAT
TGACCAGATCGGTCGTTACAGG-AGATC--GAGAA-GGAGAAGAAAGGATAGA-ACGAAATACAGAATTTAAACAAACT-
CTATCTCTATACAACTCCTACTATACG--TATATTCCAACAC-----CCCCCCTCAATCTAAACCTCAAGGAGCTTTGCC
AAGGTTAAGATTGTACTTAAAATCATTCAACCTTCTTTCAGTAAGAGGTTTTGTAAAACCATCTGCGAGTTGATCTCCTG
TGGGAATAAACCGAATCTCCAGAAGCTTTCGAGCTACTCTTTCTCTGACAAAATGGAAC-CAACTTCAATGTGTTTTGTT
CGTGCATGAAAAACAGGATTTGCTGAGAGATACGTCGCACCAATATTATCACACCATAATCTCGCAGCCTGTGGAGTTTT
AACTCCAAGCTCATAAAGTAATGTTTGTATCCATATCACTTCAGCTGTAGCATTAGCCAGGGCCTTATATTCAGCCTTTG
TGCTTGACCTAGACACTGTGGCCTGTTTTCTTGCACTCCATAACACAAGATTAGTTCCCAGAAATACAGCAAAACCACCT
GTAGATCTTCTATCATCAGCACACCCTGCCCAGTCAGCATCAGAGTATGCAGTAACAAGCATAGAAGAAGACTTGGTAAT
GTTGAGACCAAGGCCTTCTGAGAACTTGAGATACCTTAAAATTCTTTTGACTGCAGTCCAGTGAGTGGTTCTAGGTGCTT
GTAAATATTGACATACCTTGTTCACTGAATAGGATATATCAGGACGGGTGAGTGTTAAATACTGCAAGGCACCTACGACA
CTCCTATAGTTTGTTGCATCCTCTGGTCCAAGAACTTCTCCACCTTCCACTGAAAGCTTCTCAGAGGTAGAAATTGGTGT
GTTAACTGGCTTGCAATTTTCCAACCCTACTCTCCTGAGAATGTCAGTT
>SNPs
------------------------------S----S--------------------------------------S-----
---------------------------------S----------------------------------S--------S--
--S-S-------------S----------------S--------------------------------------------
--------------S-----------------------------------S-----------------------------
-------------------------S----------------------S-------S----S------------------
--------------S----------SS---------S-----S-------S----------------S------------
------------S-----------------------------------S---------------S--S------------
---S--S-------S----------------------------------------S------------------------
---------S-----------------------------S----S-----------------------------------
--------------------------------------------------------------------------------
----S--S------------------------S----------------S---S---SS---------------------
----------S---------S---S-S-----------------------S---------------SSS-----------
------------------------------SSSSSSSSSSSSSSSSS---------------------------------
--------SSSSSS-----S--S-------------------------------SS------------------------
--------------S--SSSS------S----------S------------S--------------SS----SS------
------------------S----S-----S--------------------S--------S--------------------
-S---S----------------------------------S---------S---S--------------------SS---
--------------------------------------S-------------------S------S--S----S------
-------S----------S----------------S-----SSS------S---------------------------S-
--S---S---S-----------S----------------S----S----S----------------S---------S-S-
--------S--------------S--------------------------------------------------------
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---------------------------------SS-------S-------S--------S---------------S----
-------------------------S--S---------S-S---------------------------------------
-------------------S-----S-----------S------------------------------------------
-----------------------------------------------S---S--S--S-----------------S----
-------SS-------------------S-------------S---------------------------------S---
-------------------------------------SSSSSS-------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
-------S-----------------------------------------------------S------------------
---------------S------------------------------------------------S--------------S
----S-------------------------------S---------------------------------S---------
-------------S------------------------------------------------------------------
-S---------------------------------------S--------------------------------------
--------------------------------------S-----------------------------S-----------
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-------------------S-----------------------------------------------------S------
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---------------S-------S--------------------S----
>forward_993
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-------------GGGAGAGGAGAGCCATCAGA-----------------------------------------------
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>reverse_4382
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-------------------------------------------------------------GACCTCAAGGAGCTTTGCC
A-------------------------------------------------------------------------------
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-------------------------------------------------
