>input_sequence_62772
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---------------------------------------------------------ATGCTCCGGTCCACGCACCCGCT
CAGCCCCAGCAGG---------------AGCAGCGGAGGTAGCTCGGCTCCGGCGTCTAGCTCCGGCGAGGCGATGGTGG
GGGGCGCGCCGAGCGGGGCGAAGCTGCTGCAGATCCTGAACGTGCGGGTGGTGGGCACCGGCGAGCGCGTGGTGGTGCTG
TCGCACGGCTTCGGCACGGACCAGTCGGCGTGGAGCCGCGTGCTGCCGTACCTCATCCGCGAGCACCGCGTGGTGCTCTA
CGACCTCGTCTGCGCCGGCAGCGTCAACCCGGACCACTTCGACTTCCGCCGCTACAACAACCTGGACGCCTACGTGGACG
ACCTGCTCGCCATCCTCGACGCGCTCCGCATCCCGCGCTGCGCCCTCGTCGGCCACTCCGTCTCCGCCATGATCGGCATC
CTCGCCTCCATCCGCCGCCCCGACCTCTTCGCCAAGCTCGTCCTCATCGGCGCCTCGCCTAGGTGGGTGGTAGAGTAATT
CACAGTACACCACCGATCGAAAGATCGATAGATCAATTATATAGTCTTTCCTTTCC--------TTGCACGCGACGCGCG
GCGAACTAACCGACCGGAGCAATCGATCA-----------------------AGCAGGTTCTTGAACGACAGCGACTACC
ACGGCGGGTTCGAGCTGGAGGAGATCCAGCAGGTGTTCCAGGCGATGTCGGCCAACTACGAGGCGTGGGCCAAGGGGTAC
GCGCCGCTGGCGGTGGGCGCGGACGTGCCGGCGGCGGTGCAGGAGTTCAGCCGGACGCTGTTCAACATGCGGCCGGACAT
CTCGCTCCACGTCTGCCAGAGCGTGTTCAAGACGGACCTCCGCGGCGTGCTGGGCATGGTGCAGGCGCCGTGCGTGGTGG
TGCAGACCACCCGCGACGTCTCCGTGCCGGCCAACGTCGCCGCCTACCTCAAGGCCCACCTCGGCGGGCGCACCACCATC
GAGCCCCTGCCGACGGAGGGCCACCTCCCCCACCTCAGCGCCCCCAGCCTCCTCGCCCAGGTGCTCCGCCGCGCGCTCGC
CCGGTTCTAG----------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G258000
AACACTACCTTATCTTTGGTTGTCTTTCACAGATCCACGTGTGGCATCGAGCATTGCTCTCAGCGCACCGGCGACGAGTG
CAGAAGGAAGACAAAATCGATATTCACAAGGACATATGTGTTATTTTCTGCTTTTTATAAGGATGGTCTAGTAAAGGTTG
GACAATTTTAATATAT------GGCCTCTTTGTTGGGAAAAAAGATGT----------CAATTCATCTGAAGATGCATTA
TATTTAGGTTACATTAAAATTGGAAATTTCAAACATACAATTCGGTATTTTTGGCAGTTATCATGGTGTAAAGCCTAATT
TAGGAATTTTGTTGTGGTTAAATAAAAAACTAA-----AATTAAATTGATTTACTAAAGGTTTT--TTCTGTACTTAAAA
TGAGGTTACAACCCCTGCTAAAAAGTAC----------------------------------------------------
-------------------------------CTCCATTCCACAATTATAATTGGAGAAGAAAGAAAATACAAGCACTAGC
CTTACTAATAGGTAAAATAAATTA---TACTGGCTAGTAAAAAAGGTTAAAA-AAAATAG-CTCGCCACTCACCTTAATC
TAGTACTGCACCAAAAAATTACAGTGTTACACAACTGTACGATTGCCCTATA--CAGCTAATAAAGAAGAAAGTGATGTT
TAGCACCACAGAGCGGGTCAAAGTAATTTTGTAACAATGACATATTGACATCTCTGGGCTTGTCACGCACACAAAAAACC
AAATCAATAAAAAACAAAACCTAGCGGCTAGAATTA-TAGGCGCCTCTCCTTTTTATCCGGTGCGGCCTGGATAATTGGG
CACATCATCACACTATTCTACACCTCCAAAACGGAAAC---------------------------CACACCAAAC-----
-----------------------CAGAGCAAGCGAGGGGAATAAAGCAGAGGAGGGAGGGGGAGACAAGACGAGAGAGAG
AGAGAGAGAGAGAGAGAGGGGTAGCCAAGAACGCCATGGCCTCCGCTGCTTGCTAGCTAGC--------CAGCCAGTAGT
ATATAAGGGGCGGCACGGCCTCTGCGACCCAGCCCTGTATCCCAGGTCCGTCGTCTCATGCTCCGGTCCACGCACCCGCT
CAGCCCCAGCAGG---------------AGCAGCGGAGGTAGCTCGGCTCCGGCGTCTAGCTCCGGCGAGGCGATGGTGG
GGGGCGCGCCGAGCGGGGCGAAGCTGCTGCAGATCCTGAACGTGCGGGTGGTGGGCACCGGCGAGCGCGTGGTGGTGCTG
TCGCACGGCTTCGGCACGGACCAGTCGGCGTGGAGCCGCGTGCTGCCGTACCTCATCCGCGAGCACCGCGTGGTGCTCTA
CGACCTCGTCTGCGCCGGCAGCGTCAACCCGGACCACTTCGACTTCCGCCGCTACAACAACCTGGACGCCTACGTGGACG
ACCTGCTCGCCATCCTCGACGCGCTCCGCATCCCGCGCTGCGCCCTCGTCGGCCACTCCGTCTCCGCCATGATCGGCATC
CTCGCCTCCATCCGCCGCCCCGACCTCTTCGCCAAGCTCGTCCTCATCGGCGCCTCGCCTAGGTGGGTGGTAGAGTAATT
CACAGTACACCACCGATCGAAAGATCGATAGATCAATTATATAGTCTTTCCTTTCC--------TTGCACGCGACGCGCG
GCGAACTAACCGACCGGAGCAATCGATCA-----------------------AGCAGGTTCTTGAACGACAGCGACTACC
ACGGCGGGTTCGAGCTGGAGGAGATCCAGCAGGTGTTCCAGGCGATGTCGGCCAACTACGAGGCGTGGGCCAAGGGGTAC
GCGCCGCTGGCGGTGGGCGCGGACGTGCCGGCGGCGGTGCAGGAGTTCAGCCGGACGCTGTTCAACATGCGGCCGGACAT
CTCGCTCCACGTCTGCCAGAGCGTGTTCAAGACGGACCTCCGCGGCGTGCTGGGCATGGTGCAGGCGCCGTGCGTGGTGG
TGCAGACCACCCGCGACGTCTCCGTGCCGGCCAACGTCGCCGCCTACCTCAAGGCCCACCTCGGCGGGCGCACCACCATC
GAGCCCCTGCCGACGGAGGGCCACCTCCCCCACCTCAGCGCCCCCAGCCTCCTCGCCCAGGTGCTCCGCCGCGCGCTCGC
CCGGTTCTAGCATCGCTAGAGAAAAGCAAAGAGAGAGAAGAAATTACTGCTGCTGCCTCTGCTGGTTTCACCGACCCGCG
CGTACACGGGGTAGGAGGACACGCGCAAAGTCTACCCCGTATTTCTTCTCTGTATTTTTACCGCATCG------ATTTTT
ACTTGCCTCAAAGACTCGGAAGAAAATGCCAGGAGTGTGTCCTGTAGCACGTATGAGCACTCGAAATATTTCTCGAGGCG
TACGAGTACTCATCAGTTTTCATCTCTATCTTTTCGCTGAGAAGAAAAGTTTTGTCTTTTCACTGCGTTTGCACTAGCAC
CGGCGACGTCTCATGAATGGACTGGCGGGTGGG------------------------------GCCCGCACTGAGAGTTC
GAGACTGTGAACGAGTTTGT-CTCCTTGCTCTTCTTGTCCTGCCCA-------CTGTCCATCCGTAGCACCAGGCCCGCA
GCCGCGCTGCTGCAGTGTTATTCTTGGTTTTTAGTGGTAAATTTTGCCTGTGCAAACACTAGTAAGTACTCCTATGGCTC
ATCATCCATGTCATCATTTATGTC---TGCATAAGCATAATTACATTTGGATAAGTGATCA--CACCCCGAAAAGAAAAA
G--------ATGGCGTCTGGATAAGTCCTGGAGAAGGATAGAGCTACTCTACTCCTATGGCTGAGTATAACCCGTGGCAG
TTGGTTGTCCACGTCGTGCATGGCCCATCTTATCACCATGGACATGGAGTATCGTGTAGCGCGGATAAAGAAGTTGACCT
ATAGCTTGCCATCTGGAGTAGGAGCCGAGCCTAGAGGAAAAAGAAGAAGGCCCCGGG-GCGTACGCGTACCGAACTGGCC
CCGGTGCGGCGCACCCGGCTGTGACTCGTACGTGATCGTCTCTTGTCATGTATTCAGGCGTGACAAGACAGTCGCAGGCA
GCGGCGTGTGGCACTGCTCCACTGCACCTACTAGAGTACTTTACTGGGTTTATCATCCAGCCACTATCTCTGAGAAATCT
CATTTTGTAACATCAAGTTGCACGGGGT
>chr4B_1
AACACTACCTTATCTTTGGTTGTCTTTCACAGATCCAGATGCGGCATCGAGCATTGCTCTCGGCGCACCGGCGACGAGTG
CAGAGGGAAGACAAAGTCGACATACACAAGGACATGTGTGTTATTTTCTGCTTTTTATAAGGATGGT-TTGTAAAGGTTG
GACAATTATAATATATAGCCATGGCCTTTTTGTTGGGAAAAAAGATAT----------CAAGTCGTCTGAAAATGCACTA
TATTTAGCTTATATTAAATTGGAG--TTTCAAACGTACAATTTGGTATTTTTGGCAGTTATCATAGTGTAAAGCCTAATT
TAGGAATTTTATTGTGGTTAAATAGAAAACTAA-----TATTAAATCAATTTACTAAAGGTTTT--TCCTGTACTT--AA
TGAGGTTACAACCCCTGCTAAAAAGTACTCCCTCCTTAAATAAATATAAGAGCGTTTTGATCACTACTTTAGTGATCTAA
ACACTCTTATATTTCTTTACAGAGGGAGTACCTTCATTCCACAATTATAATCGGAGAAGAAAGAAAATACAAGCACTAGC
CTTACTAATAGGTAAAATAAACTA---TA---GCTAGTAAAAAAGGTAAAAATAAAATAG-CTCGCCAGTCACCTTAATC
TAGTACTGTACCAAAAAATTACAGTGTTACACAACTGTACGGTTGCTCTATATACAGCTAATAAAGAAGACAGTGATGTT
TAGCACCACAGAGCGGGTCAAAGTAATTTTGTAACAATGACATATTGACATCTCTGGT-TTGTCACGCACACAAAAAACC
AAATCAATAAAAAACAAAACCTAGCGGCTGGAATTA-TAGGCGCCTCTCCTTTTTATCCGGTGCGGCCTGGATAATTGGG
CACATCATCACACTATTCTACACCTCCAAAACGGAAACAAAACAAATCTCTCTCGTTGCCCACACCACACCAAACCAGAC
CCAGAAAGAAATCAAGACGGGAGCAGAGCAAGCGAGGGGAATAAAGCAGAGGAGGGAGGGGGAGACAAGACC--------
--------AGAGAGAGAGAGGTAGCCAAGAACGCCATGGCCTCCGCTGCTTGCTAGCTAGC--------CAGCCAGTAGT
ATATAAGGAGCGGCACCGCCTGTGCGACCCGGCCCCGTATCCCAAGTCAGTCGTCTCATGCTCCGGTCCACGCACCCGCT
CAGCCCCAGCAGC---------------AGC---------AGCTCGGCCCCGGCGTCCAGCTCCGGCGAGACGATGGTGG
GGGGCGCGCCGAGCGGGGCGAAGCTGCTGCAGATCCTGAACGTGCGCGTGGTGGGCACCGGCGAGCGCGTGGTGGTGCTG
TCGCACGGCTTCGGCACGGACCAGTCGGCGTGGAGCCGCGTGCTGCCGTACCTCATCCGTGAGCACCGCGTGGTGCTCTA
CGACCTCGTCTGCGCCGGCAGCGTCAACCCGGACCACTTCGACTTCCGCCGCTACAACAACCTGGACGCCTACGTGGACG
ACCTCCTCTCCATCCTCGACGCGCTCCGCATCCCGCGCTGCGCCTTCGTCGGCCACTCCGTCTCCGCCATGATCGGCATC
CTCGCCTCCATCCGCCGCCCCGACCTCTTCGCCAAGCTCGTCCTCATCGGCGCCTCGCCTAGGTGGGTGGCCCCGTAACT
CACAGTACACCGCCGATCGAAAGATCGATAGGTCAATTA--TAGTCTTTCCTTTCC--------TTGCACGCGACGCGCG
GCGAACTAACTGACCGGAGTAATCAATCAATCGATCGATCGATCGATCTTCGAGCAGGTTCTTGAACGACAGCGACTACC
ACGGCGGGTTCGAGCTGGAGGAGATCCAGCAGGTGTTCCAGGCGATGTCGGCCAACTACGAGGCGTGGGCCAAGGGGTAC
GCGCCGCTGGCGGTGGGCGCGGACGTGCCGGCGGCGGTGCAGGAGTTCAGCCGGACGCTGTTCAACATGCGGCCGGACAT
CTCGCTCCACGTCTGCCAGAGCGTGTTCAAGACGGACCTCCGCGGCGTGCTGGGCATGGTGCAGGCGCCGTGCGTGGTGG
TGCAGACCACCCGCGACGTCTCCGTGCCGGCCAACGTGGCGGCGTACCTCAGGGCCCACCTCGGCGGGCGCACCACCATC
GAGCCCCTGCCGACGGAGGGCCACCTCCCCCACCTCAGCGCCCCCAGCCTCCTCGCCCAGGTGCTCCGCCGCGCGCTCGC
CCGGTTCTAGCACGAGAAAAAAGT------GAGAGAGAAGAAATTACTGCAGCTGC--CTGCTGGTTTCACCGACCCGCG
CGTACGTACGGG-----------------GTCTACCCCGTATTTCTTCTCTGTATTTTTACCGCATCCGCATGAATTTGT
ACTTGCCTCATAGACTCGGAAGAAAATGCCAGGAGTGTGTCCTGTAGCACGTATGAGCACTCGAAATATTTCTCGAGGCG
TACGAGTACTCATCAGTTTTCGTCTCTATCTTTTCGTTGAGAAGAAAAG-TTTGTCTTTTCACTGCGTTTGCACTAGCAC
CGGCGACGTCTCATGAATGGACTGGCGGGTGGGCCTGCTTGGCGCCACGTGGCGGTGACAGGGGCCCGCACCGAGAGTTC
GAGACTGTACACGAGTTTTGGCTCCTTCCTCTTCTTGTCCTGCCCCTGTGGCCCTGTCCATCCGTGACAGC-GGCCCGCA
GCCGCGCTGCCGCAGTG---------GTTTTAAGTGGTAATTTTGCCTGTGCTAAACACTAGTATCCCATAA------TC
ATCACCCATGCCATCATTTGTGTACTGTGCATCAGCATAATCGCGTTTGGATACGTGTGACCCCACCGCCAAAAGAAAAA
AGAAATACAATTGCATTTGGATAAGTCCTGGAGAAGGACGGAGCTGCCATACTCCTATGGCTGAGTATAACCCATGGCAG
TTGGTTGTCCACGTCGTGCATGGCCCATCTTATCACCATGGACATGGAGTATCGTGTAGCGCGGATAACGAAGTTGACCT
A--GCTTGCCATCTGGAGTAGGAGCCGAGCCTAGAGGAAAAAGAAGAAGGCCCGGCCAGCGTACGCGTACCGAACTGGCC
CCGGTGCGGCGCACCCGGTGGTGACTCGTACGCGATCA--TCTTGTCATGTACTCAGGCGTGACAAGACAGTCACAGGCA
GCGGCGTGTCGCACTGCTCCACTGCACCTACTA-----------------------------------------------
----------------------------
>chr4A_1
AACACTACCTTATCTTTGATTGTCTTTCACAAATCCAGATGCGGCATCGAGCATTGCTCACAGCGCACTGGCGACAAGTG
TAGAAGGAAGACAAAGTTGATATACACAAGAACATGTGTGTTATTTTCTGCTTTT-ATAAGGATGGTCTTGCAAGGGTTG
GAGAATTTTAACATATGGTCAAGGCCTTCTCGTGGGGGTGGGGGGGGGGAGGAGGTACCAAGTCATTTGAAAATGCACTA
TATTTAGCTTATATTAAAATTGGAAATTTCAAACATACAATTTGGTATTTTTGGCAGTAATCATGGTGCAAAGCCTAATT
TAGGAACTTTATTGTGGTTAAATTAAATAATAAAACTGAATTAAATCGATTTACTAAAGATTTTTTTTCTGTACTTAAAA
TGAGGTTACAACCCCTGCTAAAAAGTACCTTCAT----------------------------------------------
------------------------------------TTCCACAATTATAATTGGAGAAGAAAGAAAATACAAGCGCTAGC
ATTACTAATAGGTAAAATAAAACATAGTA---GCTAGTAAAAAAGGTAAAAT-AAAATATACTCGCCACTCCCCTTAATC
TAGTACCGTACCAAAAAATTACAGTGTTACAAAACTGTACGATTGCCCCATATGCAGCTAATAAAGAAGACAGTGATGTT
AGGCACCACAGAGCGGGTCAAAGTAATTTTGTAACAATGACATATTGACATCTCTGGGCCTGTCACGCGCACAAAAAACC
AAATCAATAAAAAACAAAACCTAGCGGCTAGAATTATTAGGTGCCTCTCCTTTTTATCCGGTGCGGCGTGGATAATTGGG
CACATCATCACACTATTCTACACCTCCAAAACGGAAACAAAACAAAACTCTCTCGTCGCCCACACCACACCAAACCAGAC
CAGGAAAGAAATCCAGAGGGGAGCAGAGCAAGCGAGGGGAATAAAGCAGAGGAGGG------------------------
-----------GAGAGAGAGGTAGCCAAGAACGCCATGGCCTCCGCTGCTTGCTAGCTAGCTAGCCAGCCAGCCAGTAGT
ATATAAGGAGCGGCACCGCCCGTGCGACCCAGGC------CCCAAGGCAGTCGTCTCATGCTCCGGTCCACGCATCCCCT
CAGCCCCAGCAGCGGCGGCAGCGGAGGTAGC---------AGCCCGGCCCCGGCGTCCAGCTCCGGCGAGGCGATGGTGG
GGGGCGCGCCGAGCGGGGCGAAGCTGCTGCAGATCCTGAACGTGCGGGTGGTGGGCACCGGCGAGCGCGTGGTGGTGCTG
TCGCACGGCTTCGGCACGGACCAGTCGGCGTGGAGCCGCGTGCTGCCGTACCTCATCCGCGAGCACCGCGTGGTGCTCTA
CGACCTCGTCTGCGCCGGCAGCGTCAACCCGGACCACTTCGACTTCCGCCGCTACAACAACCTGGACGCTTACGTGGACG
ACCTGCTCGCCATCCTCGACGCGCTCCGCATCCCGCGCTGCGCCTTCGTCGGCCACTCCGTCTCCGCCATGATCGGCATC
CTCGCCTCCATCCGCCGCCCCGACCTCTTCGCCAAGCTCGTCCTCATCGGCGCCTCGCCTAGGTGGGTGGT---------
---------------------------------CAATTA--TAGTTTTTCGTTTCCTTGCACCGTTGCACGCGACGCGCG
GCGAACTAACCGACCGGAGTAATCAATCAATCGATCGATCGA-------TCGAGCAGGTTCTTGAACGACAGCGACTACC
ACGGCGGGTTCGAGCTGGAGGAGATCCAGCAGGTGTTCCAGGCGATGTCGGCCAACTACGAGGCGTGGGCCAAGGGGTAC
GCGCCGCTGGCGGTGGGCGCGGACGTGCCGGCGGCGGTGCAGGAGTTCAGCCGGACGCTGTTCAACATGCGGCCGGACAT
CTCGCTGCACGTCTGCCAGAGCGTGTTCAAGACGGACCTCCGCGGCGTGCTGGGCATGGTGCAGGCGCCGTGCGTGGTGG
TGCAGACCACCCGCGACGTCTCCGTGCCGGCCAACGTCGCCGCCTACCTCAGGGCCCACCTCGGCGGGCGCACCACCATC
GAGCCCCTGCCGACGGAGGGCCACCTCCCCCACCTCAGCGCCCCCAGCCTCCTCGCCCAGGTGCTCCGCCGCGCGCTCGC
CCGGTTCTAGCACCAGAAAAAAGTA--AAAGAGAGAGAAGAAATTACTGCCGCTCTGG----------------------
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-----------------------------------------------TCTACTCCTATGGATGAGTATAACGCGTGGCGG
TCGGTTGTCCACGTCGTGCATGGCCCATCCTATCACCATGGACATGGAGTATCGTGTAGCGCGGATAACGAAGTTGACCT
A--GCTCCCATC------TAGGAGCCGAGCCG-------------------------AGCGTACGCGTACCGAACTGGCC
CCGGCGGTGACTCGTAC-----------TACGCGATCA--TCTTGTCATCTGCTCGGGCGTGACAAGACATTCGCAGGCA
GCGGCGTGTCGCGCTGCTCCACTGCACCTACCAGACTACTTTACTGGGTTTATTATCCAGCCACTATCTCCGAGAAATCT
CATTTTGTAACATCAAGTTGCACGGGGT
>SNPs
-------------------------------------SS--S--------------------------------------
---------------S-------S-----------S---------------------------------S----------
---------------------------S---------------------------------S---------S-----S--
-------S---S------------------------------S-------------------------------------
----------S-----------------------------------S---------------------------------
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---------------------------------S----------------------------------------------
---------------------S-------SSS---------------S--------------------------------
--------S-------------------------------------------------------------S---------
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-----------------------------------------------------------------------SSSSSSSSS
SSSSSSSS----------S-------------------------------------------------------------
--------S-------S----S-------------S--------S---S-------------------------------
------------S------------------SSSSSSSSS--------S--------S----------------------
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--------------------------------------------S-----------------------------------
-----------------------------------------------------------------------SSS----S-
-----------S-------------------S-------SS---------------------------------------
-------------------S----S-------------------------------------------------------
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---------------------------------------------------S----------------------------
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------------S-SSS-S-S-SS-SS-----------------------S-----SS----------------------
-----SSSS--SSSSSSSSSSSSSSSSSS--------------------------------------S----------S-
----------S---------------------------------------------------------------------
---------------------S--------------S------------S------------------------------
-----------------------------------------------------------------------S--------
--------SS--------SS-------S-----------------S-------------------SS--S-S--------
----------S------SSSSSSSSS-----S--------S---SS-SSSSSS-----------SSSSS-SSSSSSSS--
----S-----S--------S---S--------S--------SS-S--------S---SSSS------S-S----------
S----------S--S-S---------------------SS-----S----------------------------------
--------------------------------------------------------------------S-----------
-SS--------------------------------------------------S-SS-----------------------
------------------SS------------S----SSS------------S---------------------------
---------S-------------------------S-----------------S----------------S---------
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>forward_1035
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-------------------------------------------------------GAGGGGGAGACAAGACGAGA-----
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>reverse_2343
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----------------------GCGCAAAGTCTACCCCGTAT--------------------------------------
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