>input_sequence_62753
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-----------------------------------------------------------ATGGCTTCTTCCTCCTCTTCC
GTCTTCTCCCCGCTCCTGCGGCCTACGCTCCGGCTGCGGGTCGCCTCCTGCGCCACGCGCTCCTCTGCTCTCCACGCTGT
GTCTGCGGACAACGCTGCCCCTGCCCCGCAGTCGGCGCCTCTCGCGGTTGCTAGCCACAGGAGGGAGCTGGTGGTGGGGA
CGGCGCTCGGTGCGCTGTTCTCGGCGACGCCGCTGCCCGCGGGAGCGCGCGAGGTCGAGGCCGGCAAGTACCTGCCGCCG
GCGCCGGCCAGCCCGGGCTTCGTGTTCTTCAAGGCCACCACCAAGGACACCCCCGCCCTCCGGGCTGGTGATCACTCGGT
TCTTGCT--ACTTTCTAGCTATCTCCATGCATTGTTCCTTGTTAGTGCTAGTACCTATCTTGCAATCTGATGCACCCTGT
CGATTAGTCAACTGAGTTGAGTTTTG-TCATGAAATTCAGGCAATGTGGAACCATATGAGTTCATCCTGCCGCCCACCTG
GAAGCAGCTGCGAGTGGCCAACATACTCTCCGGCAATTACTGCCAGCCCAAGTGCGCGGAGCCATGGGTGGAGGTGAAAT
TCGAGGACGAGAGGCAGGGCAAAGTGCAGGTGGTGGCCTCGCCGCTGATCCGCCTCACCAACCGGCCGAACGCCACCATC
GAGGACATCGGCAGCCCCGAGAAGCTGATCGCCTCCCTGGGGCCCTTCGTCACCGGCAACACCTTGGAACCCGAGGAGAT
CATCGAGGCCTCTGTCGAGAAGATCGGCGACCTAACTGTAAGTCGCCGTCGATAACTCAC---------TGAAGGTGTTG
CTGAAACCTGAATTCCTGATGCATGGGCGTAAATTATTTGTGATGCAGTACTACAGCTATGTGCTGGAGACCCCACTGGC
ACTGACGGGCTCTCACAATCTGGCCAAGGCCACGGCCAAGGGGAGCACGGTGGTGCTCTTCGTCGCGAGCGCCAGCGACA
AGCAGTGGCAGTCGTCGGAAAAGATTCTGAAGGCTATGGTAGATTCATTCCAAATATGA---------------------
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>chr3A_1_TraesCS3A01G332500
GGGTCACTAGCTCACCTCCATGACTTGCTTCTCGTAGTTCCTGAGCTGCGTGGCGTAGGTCATGTCCTTGTTGGCCACCC
GGATCATGTAGGAGGAGATCCACCCCACCGTCATCCCGAGCACGATGAACAGCTGGACCACGTTGCCGGCTTGCAGGGGG
TCCACGCCGACGAACTGCGCGCGGTCAGGGAAAGGGTTTGC------GATCAGGTTCAGGTAAAATACAAACATGTTCTT
CA---TCATCGTTGGCAAATCGAGCAGCTGCCGGATTTTG---CTAGAGAAATGAAGAGGA-GGTCACCTCGAGGCCGGA
CTTGAGGCCGTAGCCGAGGAGGGTGACGCCGACGCCGATCAGCAGCACGTCTTTCCTCGAGTACCCGAACTCC-------
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--------------------------------ACCT--------------------------------------------
---------------------------------------------------------------TGTCATCCGTGGCTTTG
GAGTCATCCACGCTGCTTCTCAGCGCCGAGCGCCTCCTCTGCCCCACGGGCCTCTGCAGCAGCACCTTCGATCGCAGCAC
GGTTTGGCCTTTTGCAGAACATAACAAGATCAGTTTGTTAAT-AATCCATCTGCTCACTGGATTCGTGCAGCTCATTAGC
ACAAGAAAAGA-----GCATGGAGCAGAAGCAAGAATACCAGAATGGCCGGAGTGCAGGCAAGCCGTCTGGCCGCAGCGG
AGACCGCCGGCGGGCGCGGCGGCGGCGGCCCTT---CCAGCCGACTGTGGAGAGACGCGAAGGACGGGGGCGGACAAGGC
TGCAGGCGCCATGGTTGCCGAGTAAT---TCCACCGTTGCTGCTCGGCCGCACACCCGC-CCTCTGGCTCCCTTTTATCC
CACCTTATCCTCGACGTGCTGACTGACTGAGGGGGCGCTGCTCAGCCGCGTCCCCGGCACCTCTTCCGTACACGTACACG
TACACAAACTCGCCACATCGAGATCAAGAATG----CGAGCGCGTCGACAAGGCCAAATATCACACTCGTCTGGATAAGA
GTGGCCGTTCTTCTGACCCTCCC-GC--GCGCGAACCCGTGGCCCTCGCGCGCTCGCTCATGGCTTCTTCCTCCTCTTCC
GTCTTCTCCCCGCTCCTGCGGCCTACGCTCCGGCTGCGGGTCGCCTCCTGCGCCACGCGCTCCTCTGCTCTCCACGCTGT
GTCTGCGGACAACGCTGCCCCTGCCCCGCAGTCGGCGCCTCTCGCGGTTGCTAGCCACAGGAGGGAGCTGGTGGTGGGGA
CGGCGCTCGGTGCGCTGTTCTCGGCGACGCCGCTGCCCGCGGGAGCGCGCGAGGTCGAGGCCGGCAAGTACCTGCCGCCG
GCGCCGGCCAGCCCGGGCTTCGTGTTCTTCAAGGCCACCACCAAGGACACCCCCGCCCTCCGGGCTGGTGATCACTCGGT
TCTTGCT--ACTTTCTAGCTATCTCCATGCATTGTTCCTTGTTAGTGCTAGTACCTATCTTGCAATCTGATGCACCCTGT
CGATTAGTCAACTGAGTTGAGTTTTG-TCATGAAATTCAGGCAATGTGGAACCATATGAGTTCATCCTGCCGCCCACCTG
GAAGCAGCTGCGAGTGGCCAACATACTCTCCGGCAATTACTGCCAGCCCAAGTGCGCGGAGCCATGGGTGGAGGTGAAAT
TCGAGGACGAGAGGCAGGGCAAAGTGCAGGTGGTGGCCTCGCCGCTGATCCGCCTCACCAACCGGCCGAACGCCACCATC
GAGGACATCGGCAGCCCCGAGAAGCTGATCGCCTCCCTGGGGCCCTTCGTCACCGGCAACACCTTGGAACCCGAGGAGAT
CATCGAGGCCTCTGTCGAGAAGATCGGCGACCTAACTGTAAGTCGCCGTCGATAACTCAC---------TGAAGGTGTTG
CTGAAACCTGAATTCCTGATGCATGGGCGTAAATTATTTGTGATGCAGTACTACAGCTATGTGCTGGAGACCCCACTGGC
ACTGACGGGCTCTCACAATCTGGCCAAGGCCACGGCCAAGGGGAGCACGGTGGTGCTCTTCGTCGCGAGCGCCAGCGACA
AGCAGTGGCAGTCGTCGGAAAAGATTCTGAAGGCTATGGTAGATTCATTCCAAATATGATTGCAGCAAGTGCAGGCTTGG
CCTCCAGACCTGGACGCGCGGGTTTGCTTGCTTACTGCTTCCACGAAAGAAAATGGTACCTGTTTTTGAGGCTTGGAACA
GTTGTAATGAGCTACTTGATCGACTAAGGTG--ACTATAAGCTTGTACACTAGCTTTTTATAGAGGTTATTCCAATGT--
-ACACACTGATCAGAATCAGTTGGTATCTTCTTCCCAACAGC-AAAAATGTTTGAGTTTGAATATTCTACCATGCACGTG
AGGTACCATGCAG--CGTTTGGAGCATCTCTAGCCAATCTCTTAAAAGACTTTAGAG-AGTAAAAATATATTTCAAGGGC
CTAAACTGGATCTAGCCGATCCTTATTAGCATTAGAGGAGTAAAACATT-TACACCTGGCGTCGGTGGCCCCTTAATTTA
TTCGACCGGCGCCACTCTCCCCCGCTCGACCGCATCCACTCCAGAGCGGCCATCCCTTTCCTCCACCAGCCACCATTCAC
CACTGCAGTCGCCTGGCACCACCCGCCGCTCCTCGTCCTTGCACTGTTGGATTCGACGCGCACCCCCACCGGATTCGATG
CACCCATGCCCGGCGCCGTCGTATTTTGTCGGGGTTCGTCAAGCGTAGCCACCCGGAGCTCGTTGCGCCGCCTCGTGGTA
TGTATTCCTCCTCTTACCGCTTGCATTGTCACCCAACCACCAGCAGATCCTCGTCGGCCATTCGAGCGGGCTCAGCCCTA
GCCCGACAAC---TCGACGTGCCTCTGCCGATCATCAAGTGTGATGACTGCTAGCGGCTGATTCTGTGCCAGGTCTCGAA
GACGATAGATTATTCCGGATGGGTTTTCTTCAAGTGCGAAATGGACTGAGTGCGTTTTTGTGCGATAGTTCTTTGGTTCA
ACTAAAATTTGTGCTT------------------------------------AGACTTAACCAAGTCTCAGTCAAGTCAC
ATAACATATAAAA---------------GTTTAAAAGAAAATTTTAAACGGATCTTCATGTGAGATCTCACGAATAAAGC
ATC
>chr3D_1
GGGTCACTAGCTCACCTCCATGACTTGCTTCTCGTAGTTCCTGAGCTGCGTGGCGTAGGTCATGTCCTTGTTGGCCACCC
GGATCATGTAGGAGGAGATCCACCCCACCGTCATCCCGAGCACGATGAACAGCTGGACCACGTTGCCGGCTTGCAGGGGG
TCGACGCCGACGAACTGCGCACGGTCAGGGAACGGTTTCGTGATCAGGATTAGGTTCACGTAAAAACAGACAG-------
CTTCTTCATCGATGGCAAACCGAGCCGCTGCTGGTTTTTG---CTAGGGAAATCAAGAAGAGGGTCACCTCGAGGCCGGA
CTTGAGGCCGTAGCCGAGGAGGGTGACGCCGACGCCGATCAGCAGCACGTCTTTCCTCGAGTACCCGAACTCTACCTGCG
GAAACGCAAGCGGGCGGGCGGGCGAATTGCCTGGTTAGCTCCCGACGCGGCGTGGAAGACTGAACGAGTCGCTGACGATT
TCAGCTTTCAGGACGCAACGCATGCTGTGCTGACCT--------------------------------------------
---------------------------------------------------------------TGTCATCCGTGGCTTTG
GAGTCATCCACGCTGCTTCTCAGCGCTAAGCGCCTCCTCTGTCCCACGGGCCTCAGCAGCA---CCTTCGATCGCAGCAC
AGCTTGGCCTTTTGGAGAACATAACAAGATCAATTTGTTAACAAATCGATCTGCTCGGTGGATCTGTGCAGCTCATTATC
AC-----AAGAAAATAGCATGGGGCAGAAGCAAACATACCAGAGTGGCCGGAGTGCTGGCAAGCCGTCTTGCCAAAGCGG
AGTCCGCCGGCGGGCGCGGGCGCGGCGGCCCTAGTCCCCGTCGAGCGGGCAGAGACGCGAAGGACGGGGGCGGACAGGGC
TGCTGGCGCCATGGTTGCCGAGTAGTCAGTCCACCGTTGCTGCTCGGCCGCACACCCGCGCCTCTGGCTCCC-TTTATCC
CACCTTATCCTCGACGTGCTGACTGACTGAGGGGGCGCTGCTCAGCCGCGTCCCCGGCACCCCTCCCGTACACGTACACG
TACACAAGCTGGCCACATCGAGGCCAAAAAATGCCTCGAGCGCGTCGACAAGGCCAAATATCACACTCGTCTGGATAAGA
GTGGCCGTTCTTCCGACCCTCCC-GCGGGCGCGAACCCGTGGCCCTCGCGCGCTC----ATGGCTTCTTCCTCCTCCTCC
GTCTTCTCCCCGCTCCTGCGGCCGTCCCTCCGGCTGCCCGTCGCCTCGGTCACCACGCGCTCCTCTGTTCCCCACGCTGT
GTCGGTGGACAGCGCGGCCGCTGCCACGCAGCCGGCGCCTCTAGCGGTTGTCAGTCACAGGAGGGAGCTGGTGGTGGGGA
CGGCGCTCGGCGCGCTGTTGTCGGCGACGCCGCTGCCCGTTGGTGCGCGGGAGGTCGAGGCCGGCAAGTACCTGCCGCCG
GCGCCGTCCAGCCCGGGCTTCGTGTTCTTCAAGGCCAGCACCAAGGACACCCCTGCCCTCCGGGCTGGTGATCACTCGAT
TCTTGCTGTACTTTCTAGCCATCTCCATGCATTGTTCCTCGTTGGTGCTAGTACCTATCTTGCAACCCGATGCACGCTGT
CGATTAGTCAGCTGAGTTGAGTTTTG-TCATGAAATTCAGGCAATGTGGAACCATACGAGTTCATCCTGCCGCCCACCTG
GAAGCAGCTGCGAGTGGCCAACATACTTTCCGGCAACTACTGCCAGCCCAAGTGCGCGGAGCCATGGGTGGAGGTGAAAT
TCGAGGATGAGAGGCAGGGCAAAGTGCAGGTAGTCGCCTCGCCGCTCATCCGCCTGACCAACAGGCCGAACGCCACCATC
GAGGACATCGGCAGCCCCGAGAAGCTGATCGCCTCCCTGGGGCCTTTCGTCACCGGCAACACCTTGGAGCCCGAAGAGAT
CATCGAGACCTCTGTCGAGAAGATCGGCGACCTAACTGTAAGTTTATCAGTC-AGGTTCCGTTTTTACATGATGGTGTTG
CTGAAACCTGAATTCCTGATGCATGGGCGTAAATTATTTGTGATGCAGTACTACAGCTATGTGTTGGAGACTCCACTGGC
ACTGACGGGCTCTCACAATCTGGCCAAGGCCACGGCCAAGGGGAGCACTGTGGTGCTCTTCGTCGCGAGCGCCAGCGACA
AGCAGTGGCAGTCGTCGGAAAAGATTCTGAAGGCTATGGTAGATTCGTTCCAAATATGATTGCAGCAAGTGCAGGC--GG
CCTCCAGACCTGGACGCGCGGGTTTGCTTGCTTACTACTTCCACAAGAGAAACTGGTACCTGTTTTTGAGGCTTGGAACA
CTTGTAATGAGCTACTTGATCGACTAAGGTGTGACTATAAGCTTGTACACTAGCTTATTATAGAGGTAATTCCATGTACA
CACACACTGATCAGAATCAATTGGTCTCTTCTTCCAAACAGCAAAAAACTCTTGAGTCTGGATTTTCTACCATGCA----
------------G--CGCTTGGAGCATCTCTAGCTGATCTCTTAAAAAACTTTAAAGAAGTAAAAATATATTTTAAAGGC
CTAAACCGAATCTAGCCGATCCTTATCAGCATTGGAGGAGTAAAAAATTTTACACCGCACGGCGGTTGCCCCTTAATTTA
CTTGACCGGCGC--------------------------------------------------------------------
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>chr3B_1
GGGTCACTAGCTCACCTCCATGACTTGCTTCTCGTAGTTCCTGAGCTGCGTGGCGTAGGTCATGTCCTTGTTGGCCACCC
GGATCATGTAGGAGGAGATCCACCCCACCGTCATCCCGAGCACGATGAACAGCTGGACCACGTTGCCGGCTTGCAGGGGG
TCGACGCCGAGGAACTGCGCGCGGTCAGGAACAGGGTTTGT------GATCAGGTTCAGGTGAAAAACAGACGGGTTCTT
CTTCTTCATCGATGGCAAATTGAGACGCTGCCGGGTTTTGCTACTAGAGAAATGAAGAGGA-GGTCACCTCGAGGCCGGA
CTTGAGGCCGTAGCCCAGGAGGGTGACGCCGACGCCGATCAGCAGCACGTCTTTCCTCGAGTACCCGAACTCC-------
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--------------------------------ACCTGCGGAAACGCAAGCGGGCGGGCGAATCGCCTGGTTAGCTCCAGC
GTGTCGTGGAAGGCCGAACGAGTCGCCGAGGATTTCGGGACGCAGCGCATGCTGTGCTCACCTTGTCATCCGTGGCTTTG
GAGTCATCCACGCTGCTTCTCAGCGCCGACCGCCTCCTCTGCCCCACGGGCCTCAGCAGCAGCGCGTTCGATCCCAGCAC
AGCTTGGGCTTCCGGAGATCATAACAAGATCAGTTTGTTAATAAATCCATCTGCTCACTGGATTCGTGCAGCTCATTGTC
AC-----AAGA-----GCATGGAGCAGAAGCAAAAGTACCAGAGTGGCCGGGGTGCAGGCAGGCCGTCTGGCCGAAGCGG
ACACCGCCGGCGGGCGCGGCGGT---GGCCGTAGTCCCGGCCGAGCGGGGAGAGACGCGAAGGACCGGGGCGGACAGGGC
TGCAGGCGCCATGGTTGCCGAGTAGT---TCCACCGTTGCTGCTCGGCCGCACACCCGCGCCTCTGGCTCCC-TTTATCC
CACCTTATCCTCGACGTGCTAACTGACTGAGGGGGCGCTGCTCAGCCGCGTCCG------------CGTACACGTACACG
TACACAAGCTCGCCACATCGAGGCCAAAAATG----CGAGCGCGTCGACGAGACCAAATATCACACTCGTCTGGATAAGA
GTGGCCGTTCTCCCGACCCACCCCGCGCGCGCGAACCCGTGGCCCTCGCGCGCTC----ATGGCTTCT---TCCTCCTCC
GTCTTCTCCCCGCTCCTGCGGCCTACACTCCGGCTGCCGGTCGCGTCGGTAACCACGCGCTCCTCTGTTCCCCACGCTGT
GTCGGTGGACAACGCGGCCGCTGCCACGCAGCCGGCGCCGCTCGCGGTTGTCAGTCACAGGAGGGAGCTGGTGGTGGGAA
CAGCACTCGGCGCGCTGTTCTCGGCGACAACGTTGCCCGTAGGGGCGCGCGAGGTCGAGGCCGGCAAGTACCTGCCGCCG
GCGCCGTCCAGCCCGGGCTTCGTGTTCTTCAAGGCCACCACCAAGGACACCCCTGCCCTCCGGGCTGGTGATCACTCGAT
TCTTGCTGTACTTTCTAG---------------------------------TACCAATCTTGCAATCTGATGCACCCTGT
TGATTCATCAGCTGAGTCCAGTTTTGCTCATGAAATTCAGGCAATGTAGAACCTTACGAGTTCATCCTACCGCCCACCTG
GAAGCAGCTGCGAGTGGCCAACATACTGTCCGGCAACTACTGCCAGCCCAAGTGCGCGGAGCCATGGGTGGAGGTGAAAT
TCGAGGACGAGAGGCAGGGCAAAGTGCAGGTGGTGGCCTCGCCGCTCATCCGCCTGACCAACCGGCCGAACGCCACCATC
GAGGACATCGGCAGCCCCGAGAAGCTGATCGCCTCCCTGGGGCCCTTCGTCACCGGCAACACCTTGGAACCCGAGGAGAT
CATCGAGACCTCTGTCGAGAAGATCGGCGACCTAACTGTAAGTTTATCAGTC-AACTTAC---------TGATGGTGTTG
CCGAAACCTGAATTCCTGATGCATGGGCATAAATTA-TTGTGATGCAGTACTACAGCTATGTGCTGGAGACTCCACTGGC
ACTGACGGGTTCCCACAATCTGGCCAAGGCCACGGCCAAGGGGAGCACGGTGGTGCTCTTCGTCGCGAGCGCCAGCGACA
AGCAGTGGCAGTCGTCGCAAAAGATCCTGAAGGCTATGGTAGATTCATTCCAAATATGATTGCAGCAAGTGGGGGCTTGG
CCTCCAGACCTGGACGCGCGGATTTGCTTGCAT--TACTTCCACGAGAGAAACTGGTACCTGTTTTTGAGGCTTGGAACA
CTTGTAATGAGCTCCTTGATCGACTAAGGTG--ACTATAAGCTTGTACACTGGCTTATTATAGAGGTTATTCCAATGT--
-ACACACTGATCATGAACAATTTGTCTCTTCTTCCAAACAGCAAAAAAGTCTTGAGTCTGAATTTTCTACCATGCACGTG
AGGTACCATTGCAGCCGCTTGGAGCATCTCTAGCCGATCTCTTAAAATACTTTAGAGGAGCAAAAATATATTTTAAGGGC
CTAAATGGGATCTAGC----------------------------------------------------------------
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>chr3B_2551
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-------------------------------CTCGTCCCCGCACTGCTGGATTCAATGCATCCTGTCATCAGATTCGACG
CACCCAGGCCTGGCGCCGTCGTATTTTGTCGGGGTTCGTCAAGCGTAGCCACCCGGAGCTCGCCGCGACGCCTCATGGTA
TGTACTTCTCCTCTTACCGCTCGCATCATCACCCAACCACCGACGCATCCTTGTCGACCAGTCGGGCGGGCTCGACCCTA
GCCCGACAACTCATCGACGTGCCTCTGCCGATCATCAAGTGTGATGACTGCTGGCGGCTGGTTCTATGTCAGGTCTCGAA
GAACATAATTTATTCCGGATGGGTTTTCTTCAAGTGTGAATTGGAGTGAGTGCGTTTTTGTGCTATAGTTCTGCAGTTCA
ACTAAAATTTGTGCTCATTGTTTGTTGGGTGTGACTAGATCTCAGTCGACTAAGACTTAACCAAGTCTCAATCAAGTCAC
AGAACATATAAAAATCAAGAAGGAAAAGGTTTAAAAGAAAAATTTGCACGGATCTTCATGTGAGATCTCACGAATAAAGC
ATC
>SNPs
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--S-------------------------------------S------------------------S------SS------
-S---------S-------------S--------S---------------------------------------------
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------------------------------------------------------S--------S----------------
S-S-----------S---------------------------------------------------------------S-
--SSSSS--------------------------S---------S------------------------------S-----
--------------------------------S-----S-----SS-S----------------------------S---
------------------------S-----------------------------------------------S-------
-------------------------------------------------------------S--S---------------
-------S--------------SS---S----------------------------------------------------
-------------S-----------------------------------------SSSS-----------------S---
--------------------------S----------S---------SSS-S---------------S--S---------
---S-S---------S---S-----S-----S------------------SS--S-------------------------
----------S----------------------------SS--S------------------------------------
------S----------------------------------------------S------------------------S-
-------------------S-------------------S---S------------------------------------
----------S---------------------------------------------S-----------------------
---------------------------S--------S-------------------------------------------
----------------------------------------------S--------S------------------------
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-------S-----------------------------------SSSSSSSSSS----S--------------S-------
-----------------------------------------------------------------------S--------
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------------------------------------S---------S-----S---------------------------
S-------------------------------------------------------S-----------------------
-------------------S-----S---------S------------SSS------S-----S----------------
---------SSS-----S-----------------S-----------S-------------------------S------
------S-------------------S------S-----------S----------SSS--S----S-------------
S-S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS------S-------S-S--SSS-SSS--S-S-------S-
------S---S---------------------------------------------------SS---S------S-----
----S-S--------------S----SS-------------SS-SS-----S----S---S---S--------SS-----
----------------------------------------------------S-------S----S--S-----------
--SS---SS---------------------------S---S----S-----------------S--------SSS-----
---------------S------------------------------------------------------S---------
-S---------------------------------------S---SS---------------------------------
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>forward_266
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------CATCGTTGGCAAATCGAGCA------------------------------------------------------
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>reverse_2044
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-------------------------------------------CGCCGTCGATAACTCACTGA-----------------
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>forward_1788
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--------TGCGAGTGGCCAACATACTC----------------------------------------------------
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>reverse_3166
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---------------------------------------------CTGAGTGCGTTTTTGTGCGA---------------
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