>input_sequence_62751
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-TTATATAAACCGCAGGGCTCCGGCGGAAGAACACATCTCACAAAGCGAAGTTCACAGCAGCGCGCAGTGTAGTGTTGCC
AGGCACACTCCACCTGTGTTTCGTGGGTGGCATCGATCGAGG--GAGAGAGAGACACCATGAGCTACCCGCCGCCGGGCA
CCGCGTACCCTCCGCCGGGCCAGCAGCAGGCGTACCCGCCGCCGGGCAACGGTTACGGCTACCCTCCGCCGGGCCAGGAG
CAGCCGCAGCAGCAGGCC---------TACCCTCCGCCGGCGTACGGCGCGCCGCCGCCCGTCGCGGCCGACTACTACCA
GCCCAAGGACGGCGGCGCGTACCCGCAGCAGCAGCAGCAGGCGTACGGCGCGCCGCCGCCCGTCGCCGCCAACTACTACC
CGCCGCCGCAGCAGCAGCAGCAGGCCCA---GCCGCCGCCGGAGGCGCAGAGCCGCGGCAGCGACGGCTTCTGGAAAGGA
TGGTAATTCACAGACCACTCGTCTAACACGACACGTACTACTTGCGTCGTGCATTATGCCTGCATGCATACCTAAATCCA
TTACCCGTATCAGTAGCTGCTTGCCTGATCCTTCTGTATGTTTTGTTTGTTTTGATCTGCGTGCAGCTGTGCCGCAATCT
GCTGCTGCTGCCTGCTCGACATGTGCCTCTGATCGATGTTGCACAGGATGATGATCCACATACAGCTGCTCGCCATC---
---AGATCATCGTTTCCTTGGCACAACTTGGATTTGGCTTAATTCTGTA-TCACCATGTCGCTCAGTTACCAG-----TC
AGTGGATTTACTTTGTTGTTGCTTGCTTATTAGCAGAGACCTCCCTTCTGTAATTTGTTGGGCATGAATTGGATATGTGC
GAGTTATTTCCAGCAACCAGTACATTTATTCTCCAGTTGAGTTTTTGCCATTGCGATCAGAGAGGAAACAAAAAAGTTGC
TGTTCCTCAGATGTCACAAAGCAACCTACGGCA--GCCAAGGGTGCCAAATGTCAGACCCCTCTTTTGTTTGTCCATAGG
TAGAAACGGCAAACATA---------------------------------------------------------------
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>chr2D_1_TraesCS2D01G417700
TTCTTATTCCTATGTGTTTCCTTCTTTTTTTTTTCTTGGCCCAG----------TATGTAACTAATCCTCCATAGGTTAA
GGACCCATTTGATTTGAAGAATTTCTAAAGGAATTTTGGAGGATTCTAATCATCGGGATTTTTTCCTACGTGGGGTTGTT
TAATTCGCAGTATTACAATCCATGGAAGTTTTCCTTAGGATACAGGGCATCTTCGATTCAAAGGATTTGTAAAGGAAATT
TGGCGCATTCTAATCCTCAGGATTTTTTCATACATGACTTGGCTGATTTGTAGGATTACAATTCATAAATATTTTGCCTG
AAGATTCATTAGTACTAGTTTTCATAGTAAAAATATCATCCACTACAACCTAATGTGTTTAATCCTACGTTTTTCTGCGC
ACAACCGAACGCTCGTACTGTTTTGTGAACCTATTAAACGGCCCGCTAAAGGCAACGGAACCGAGTCTTTGTGGCATGTT
GACCGGGCATCATCTTCAAGTCCGCTAGATCCTGACATTGTCCTCTTCATCCGACGTGATTGAAGAA---GAAGAGTGCC
GCCACAAGTCGCCATATGCACACCACACTCCG-AGACACCCGCATACTCTGCACAAGCCGACACTGTTGGGCCGAAGGAC
GCGGCCGG-------GAACCGTGTCCCGCTCCGGCCAAACGGGTCCTCAGAGGCTAAGTCTGTGAGCCGAAGAAAAATTC
TCACGCCACGCCTAGAATATTTCC------------AAAAGAGTAGCTTTGAAAGCAGAAGCGCGCGCGTTCAGAAGTTC
GAAATTAGGAGGAGGGAGGGAAAACGGTTTCTTGTTCTGG---ACGACGAGGAGGAACCGAAACAGCAGCCGTCTA---T
ATGTGACGCGATTAATCATGCACGCAGATGCGACGGGCCGGCGCCCCC-TGATTTGTATAGTACCGAGTAAATGAGTGCC
AGCTTTGGATTGCGCGTCCAAAC-AATCCTAGTTAATCCGGCAGCACTCCACTGGCAGCATATGCCTCGCGGCACGGAGG
ATTATATAAACCGCAGGGCTCCGGCGGAAGAACACATCTCACAAAGCGAAGTTCACAGCAGCGCGCAGTGTAGTGTTGCC
AGGCACACTCCACCTGTGTTTCGTGGGTGGCATCGATCGAGG--GAGAGAGAGACACCATGAGCTACCCGCCGCCGGGCA
CCGCGTACCCTCCGCCGGGCCAGCAGCAGGCGTACCCGCCGCCGGGCAACGGTTACGGCTACCCTCCGCCGGGCCAGGAG
CAGCCGCAGCAGCAGGCC---------TACCCTCCGCCGGCGTACGGCGCGCCGCCGCCCGTCGCGGCCGACTACTACCA
GCCCAAGGACGGCGGCGCGTACCCGCAGCAGCAGCAGCAGGCGTACGGCGCGCCGCCGCCCGTCGCCGCCAACTACTACC
CGCCGCCGCAGCAGCAGCAGCAGGCCCA---GCCGCCGCCGGAGGCGCAGAGCCGCGGCAGCGACGGCTTCTGGAAAGGA
TGGTAATTCACAGACCACTCGTCTAACACGACACGTACTACTTGCGTCGTGCATTATGCCTGCATGCATACCTAAATCCA
TTACCCGTATCAGTAGCTGCTTGCCTGATCCTTCTGTATGTTTTGTTTGTTTTGATCTGCGTGCAGCTGTGCCGCAATCT
GCTGCTGCTGCCTGCTCGACATGTGCCTCTGATCGATGTTGCACAGGATGATGATCCACATACAGCTGCTCGCCATC---
---AGATCATCGTTTCCTTGGCACAACTTGGATTTGGCTTAATTCTGTA-TCACCATGTCGCTCAGTTACCAG-----TC
AGTGGATTTACTTTGTTGTTGCTTGCTTATTAGCAGAGACCTCCCTTCTGTAATTTGTTGGGCATGAATTGGATATGTGC
GAGTTATTTCCAGCAACCAGTACATTTATTCTCCAGTTGAGTTTTTGCCATTGCGATCAGAGAGGAAACAAAAAAGTTGC
TGTTCCTCAGATGTCACAAAGCAACCTACGGCA--GCCAAGGGTGCCAAATGTCAGACCCCTCTTTTGTTTGTCCATAGG
TAGAAACGGCAAACATAATAAATGCGTGCTCTTTTGGAAATATTCGATACTTACAGCTTAAGCAATGCCGTGAGCTGTAC
TATAATAGCACTATACCTGAC-ATAATAACCAAACTAATACGGAAAAGCTAGT------------------TAAATCGGT
AGCAACACAGGACAGGTGGTCAGATTGTATGGCTTGGACCTAAACAAGGAGAAATACGAGTATACTAGTAACATTTC---
-AACCAACAGACAGACAGTAGTACAAGGTGACAAGCTGGTAATCCATTCTGATTATTTCCTTCCTCCTTGGTGCTCATAG
CCAGTGCACCTTGTGCTTCCAAGTTCAGATATTTACAAGCAGCAGTATACC---GTATTTACAGAGACATATTCCCTACT
TGGCCACATCTTATGTGCATCAACGGTTTACAGTATGTGCAATCGCCCTAGCTAAAGTTATACGGCG-------------
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---AGTAGGCCCATAGCTAGCCACCGTGGCTGACTCCGACAGCCCTGACTTCCACATGCTGCCGCCCTCCGCTCTCCGGG
TGGACCACCACGGTGGCCTGCGCCTCGTCCATAAGGCCATCCTTACCCTCGCAAGACGCAGACATCGCGCCAACCATAGC
AGGGAGCTCAGCCAGCCTTTTGGCCTCGTCGCCATCGGTGTGGGAGATGATCTCCCAGTCCTCCCTGACCGACGTGACGT
CCCCGCGTTTCTCGTGGTGCTTCTCGACCTCGAAGATGGTTGGGATGACGACATAGTCGTTGAGCGGGTCGTAAAACGGG
TCAGGTTCACCCGCGTGCAGCCAATGCTGGACTATGCGAAACACGCGGTGGTCGCAGACGATTCCTCGGTGGTCAGCAGC
AACCCCAATTCTCGCCACTGCATCAAGGCCGTCCGCCTGACAAAAGAAAGGACGATTACACTCATTTTCCACAGTGCATA
TTTCC----TTCAGATGCTCAGTAAGAAAAAAGAAGGACAAGAAGATTATCACACCTTTGCTGATTCTGCGGGAACGGAT
CCATCACCATCAACACAGATGTA
>chr2B_1
TTCTTATTCCTATGTGTTTCCTTCACTTTTTCCTTTGAATCAAAAGAGGCTCAATATGTAACTAATCCTCCATAGGTTAA
GGACCCATTTGATTTGAAGAATTTCTAAAGGAATTTCGGAGGATTCTAATCATCGGGATTTTTTCCTATGTGGGGTTGTT
TAATACGTAGTATTACAGTCCATGAAAATTTTCCATAGGATACAGGGCATCTTCAATTCAAAGGATTTGTAAAGGAAATT
TGGCGCATTCTAATCCTTAGGATTTTTTCATACATAACTTGGCTGATTTGTAGGATTGCAATTCATAAATATTTTGCCTG
AAGATCCATTAGTACTAGTTTTCATAGTAAAAATTTCAT-CACTACAACCTAATGTGTATAATCCTATGTTCTTCGGCGC
ACAATCAAACGCTCGTACT--------------------------------------GAAGCGAGTCATTGTGGCATGTT
GACCGGGGATCATCTCCAAGTCCACTATGTCCTGACGGTG-CCTCTGCCTCCAACGTGATTGAAGAA---GAAGAGTGCC
GCCACAAGTCGCCATATGCACACCACACT-CG-AGACACCCGCATACTCTGCACAAGCCGACGCTGTTGAGCCGAAGGAC
GCGGCCGGGGAAGATGAACCGTGTCCCGCTCCGACCAAACGGGTC-----------------------------------
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>chr2A_462
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-----------------------------------------------------------------------TGGCATGTT
GACCGGGGATCATCTCCAAATCCGCTAGATCCTGATGTTGTCCTCTTCGTCCAGCGTGATTGAAGAAGAAGAAGAGTGCC
GCCACAAGTCGCCATATGCACACCACACT-CCAAGACACCCGCATACTCTGCACAAGCCGACGCTGTTGGGCCGAAGGAC
GCGGCCGG-------GAATCGTGTCCCGCTCCGGCCAAACGGGTCCTTAGAGGCTTT--------------GAAAAATTC
TCACGCCACGCCTAGAATATTTCC------------AA--GAGTTGCTTTGAAAACAGAAGCGCGCGCGTTCAGAAGTCT
GAAATTAGGAGGAGGGAGGGAAG-CGGTTTCTTGTTCTGGACAACGACGAGGAGGAACCAAAGTAGCAGCCGTCTAGTAT
ACGTGACGCGATTAAT----CACGCAGATGCGACCGGCCGGCGCCCCCCTGATTTGTATAGTACCGAGTAAATGAGTGCC
AGCTTTGGATTACGCGTCCAAAC-AATCCTAATTAATCCGGCAGCACTCCACTGGCAGCATATGCCTCGCGGCACATAGG
ATTATATAAAGCGCAGGGCTCCGGCGGAAGAACACATCTCACAAAG-----TTCAGATCAGCGCGCAGTGTAGTGTTGCC
AA-------------GTATTTCGTGGGTGGCATCGATCGAGGAAGAGAGA----CACCATGAGCTACCCGCCGCCGGGCA
CCGCGTACCCTCCGCCGGGCCAGCAGCAGGCGTACCCGCCGCCGGGCAACGGTTACGGCTACCCTCCTTCGGGCCAGGAG
CAGC---CGCAGCAGCAGCAGCAGGCATACCCGCCGCCGGCGTACGGCGCGCCGCCGCCCGTCGCCGCCGACTACTACCA
GCCCAAGGACGGCGGCGCGTACCCGCCGCCGCAGCAGCAGGCGTACGGCGCGCCGCCGCCCGTCGCCGCCAACTACTACC
CGCCGCCCCAGCAGCAGCAGGCCCCGCCGCCGCCGCCGCCGGAGGCGCAGAGCCGCGGCAGCGACGGCTTCTGGAAAGGA
TGGTAATTCACAGACCACTCGTCTAACACGACACG---TACTTGCGTCGTGCATCATGCCTGCATGCATACCTAACTCCA
TTACCCGTATTAGTAACTGTCCGTCTGATCCCTCTGCATGTTTTGTTTGTTCTGATCTGCGTGCAGCTGTGCCGCAATCT
GCTGCTGCTGCCTGCTCGACATGTGCCTCTGATCGATGTTGCACAGGATGATGATCCACATGCAGCTGCTCGCCATCGAT
CGGATCG--TCGTTTCCTTGGCACATCTTGGATTTGGCTTAATTCTGTAATCACCATGTCGCTCAGTTACCATACCAATC
AGTCGATTTGCTTTGTTGCTTCTTTCTTAGCGGAACCCCTCC-----CTGTAATTTGTTGGCCATGAATTGGATATGTCA
-AGTTATTTTCAGCATCCAGTACATT----CTCCAGTTGAGTTTTTGCCATTGCGATCAGAGATGAAACAAAAAA-TTGC
TGTTCCCCGGATGTTCCAAAGCAACCTACGGCAATGCCAAGGGTGCCAAATGTCAGACACCTCTTTTGTTTGTCCATAGG
TAGAAACGGCAAATATAATAAATGCGTGCTATTTTGGAAATATTCGATACTTACAGCTTCAGCAATGCCGTGAGCTGTAG
TATTACAGTAGCACTAATAATAATAATAACCAAACTAATACGGAAAAGCTACTCCCACCTGTCCATATTACTAAATCTGT
AGCAACACAGGACAGGTGGCCGGATCCTATGGCTTGGACTTAAACAAAAAGAAATACGAGTATACTACCAGTAGCATTTC
AAACCAACAGATAGACACTGTCG--AGGTGACAACCTGGTAATCCACTCTGATTATTCCCTTCCTCCTTCGTGCTCATAG
CCAGTGCACCTTGTGCTTCCAAGTTCAGATATTTACAAGCACTGCTTAAGTTATGTATTTACAGAGACATATTCCCTACC
TGTCCACATCTTATGTGCATCAACGGTTTACAGTATGTACAATCGGCCTAGCTACTTATGAGTTATGTATATAAATATAG
TATG----------------------------------------------------------------------------
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-------AGCCCGTAGCTAGCCACCGTGGCTGACTCCGACAGCCCTGACTTCCACATGCTGCCGGCCTCCGCTCTCCGGG
TGGACCACCACGGTGGCCTGCGCCTCGTCCAGCAGGCCATCCTTACCCTCGCGAGACGCAGACAACGCGCCGACCATGGC
GGGGAGCTCGGGCGGCCTTTTGGCCTCGTCGCCGTCGGTGTGGGAGATGATCTCCCAGTCCTCCCTGACTGACGTCACGT
CCCCGCATTTCTCGTGGTGCTTCTCGACCTCGAAGATGGTTGGGATGACAACATAGTCGTTGAGCGGGTCGTAGAACGGG
TCAGGTTCACCCGCGTGCAGCCAGTGCTGGACTATGCGGAACACGCGGTGGTCGCAGACGATGCCTCGGTGGTCAGCAGC
AACCCCAATTCTCGCCACTGCATCAAGGCCGTCCGCCTGACAAAAGAAAGGATGATTACGCCCATTTTCCACGGTGCATA
TTTCC----TTCATATGCTCAGTGAGTAAAAAGAAGGGCAAGAAGATTATCACACCTTTGCTGATTCTGCGGGAACGGAT
CCATCACCATCGACACAGATGTA
>chr2B_665
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---------------------------------------------CTTAGAGGCTAAGTCTGTGAGCCGAAGAAAAATTC
TCAGGCCACGCCTGTTGGCTTAGAATATATTTCCAAAA--GAGTAGCTTTGGAAGCAGAAGTGCGCGCCTTCACAAGTCC
GAAATTAGGAGGAGGGACGGAAG-CGGCTTCAAGTTGTGG---ACGACGAGGAGGAACCAAAATAGCAGCCGTCTAATAT
--GTGACGCGATTAAT----CACGCAGCTGCGACCGGCCGGCGCCC-CCTGATTTGTATAGTACCGAGTAAATGAGTGCC
AGCTTTGGATTGCGCGTCCAAACAAATCCTAGTTAATCCGGCAGCACTCCACTGGCAGCATATGCCTCGCGGCACAGAGG
ACTATATAAAGCGCAGGGCTCCGGCAGAAGAACACATCTCACAAAG-GAAGTTCAGAG----------------------
-----CACTCCACTTGTGTTTCGTGGGTGGCATCGATCGAGAGAGAGAGAGAGACGCCATGAGCTACCCGCCGCCGGGCA
CCGCGTACCCTCCGCCGGGCCAGCAGCAGCCGTACCCGCCGCCGGGCAACGGTTACGGCTACCCTCCTCCGGGCCAGGAG
CAGC---AGCAGCAGGCC---------TACCCTCCGCCGGCGTACGGCGCGCCGCCGCCTGTCGCCGCCGACTACTACCA
GCCCAAGGACGGCGGCGCGTACCCGCAGCAGCAGCAGCAGGCGTACGGCGCGCCGCCGCCCGTCGCCGCCAACTACTACC
CGCCGCCGCAGCAGCAGCAGGCCCCGCCGC---CGCCGCCGGAGGCGCAGAGCCGCGGCAGTGACGGCTTCTGGAAAGGA
TGGTAATTCACAGACCACTCCTCTAAGATGACACGTA-TACTTGCGTCGTGCATCA----TGCATGCATACCTAACTCCA
TTGCCCGTATTAGTAGCTGTTCGTCTGATCCATCTCTATGTTTTGTTTGTTTTGATCTGCGTGCAGCTGCGCCGCAATCT
GCTGCTGCTGCCTGCTCGACATGTGCCTCTGATCGATCA-----------------CACATACAGCCGCTCGGCATC---
---ATCG--TCGTTT------CACATCTTGGATTTGGCTTAATTCTGTA-TCACCATGTCGCTCAGTCACCAGT------
AGTCGATTTGCTTTGTTGCTTCTTTAT----------------------------------------ATTGGATATGTGC
GAGTTATTTTCAGCATTCGGTATATTTTTCT----GTTGAGTCTTTGCCATTGCGATCAGAGAGGAAACAAAAAA-TTGC
TGTTCCTCGGATGTCACAAAGCAACCTACGGCAATGCCAAGGGTGCCAAATGTCAGACACCTCTCTTGTTTGTCCATAGG
TAGAAACGGCAAACATAATAAAGACGTGCTATCTTGGAAATATTCGATATTTACAGCTTAAGCAATGCCGTGAGCTGTAC
TATAAAAGCAC--TACCTGAC-ATAATAACTAAACTAATACGGAAAAGCTAAT------------------TAAATCGGT
AGCGACACAGGACAGGGGGTCAGATCGTATGGCTTGGACCTAAACAAGGAGAAATACGAGTATAGTAGTAACATTTC---
-AACCAACAGACAGACAGTA---CAAGGTCACAAGCTGGTAATCCATTCTGATTATTTCCTTCCTCCTTGGTGCTCATAG
CCAGTGCACGTTGTGCTTCCAAGTTCAGATTTTTACAAGCAGCAGTATACC---GTATTTACAGAGACACATTCCCTACC
TGGCCACATCTTATGTGCATCAACGGTTTACAGTATGTGCAATCGCCCTAGCTACTTAAGTTATATATAGTACAAGTACT
CCCTCCGTTCCTAAATATTTGTCTTTCTAGACATTTTAAATGACTAACACATACGGATGTATGTAGACATATTTTAGAGT
GTAGATTCACTCATTTTACTCCGTATGTAGTCACTTGTTAAAATGCCTAGAAAGACAAGTATTTAGGAACGGAGGGAGTA
TATAGTAAGCCCGTAACTAGCCACCGTGGCTGACTCCGACAGCCCTGACTTCCACATGCTGCCGGCCTCCGCTCTCCGGG
TGGACCACCACGGTGGCCTGCGCCTCGTCCAGCAGGCCATCCTTGCCCTCGCGAGACGCAGACAACGCGCCGACCATAGC
GGGGAGCTCCGCCGGCCTTTTGGCCTCGTCGCCGTCGGTGTGGGAGATGATCTCCCAGTCCTCCCTGACCGAGGTGACGT
CCCCGCGTTTCTCGTGGTGCTTCTCAACCTCGAAGATGGTTGGGATGACGACATAGTCGTTGAGTGGGTCATAGAACGGG
TCAGGTTCACCCGCGTGCAGCCAATGCTGGACTATGCGGAACACGCGGTGGTCGCAGACGATGCCTCGGTGGTCAGCAGC
AACCCCAATTCTCGCCACTGCATCAAGGCCGTCCGCCTGACAAAA--AAGGATGATTACGCTCATTTCCCCCAGTGCATA
TTCTATTTTTTCAGATGCTCAGTAAGAAAAAAGGAGGACAAGAAGATTATCATACCTTTGCTGATTCTGCAGGAACGGAT
CCATCACCATCAACACAGATGTA
>SNPs
------------------------SS-----SS-S-SSSS-S-S------------------------------------
------------------------------------S-------------------------------S-----------
----S--S---------S------S--S------S-------------------S-------------------------
-----------------S-----------------S---------------------S----------------------
-----S----------------------------S----S------------------S--------S---S---S----
----S-S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------S------------
-------S-------S--------------------S-----------S---S---------------------------
-----------------------------S--------------------------------S-----------------
-----------------------------------------------S--------------------------------
--------------------------------------SS--------------------------------------S-
----------------------SS-----------------------------------S---S----------------
-S--------------SSSS--------------S---------------------------------------------
---------------------------------------------------------------------------S----
----------S-----------------------------------S--------S------------------------
-SSSS--------S------------------------------------------------------------------
-------------------------------------------------------------------S------------
----SSS----------------------------------------------------------S--------------
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--------------------SSSS-S-S----------------------------------------------------
-------------------------------------S----------------S--------------------S----
----------S--------S-S-S-------S------------------------------------------------
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----SSSSS----------------S------------------------------------------------------
---S-----S--------S-S---S----SSS-S-SSSSS-SSSSSS--------------S------------------
---------S-----S-----------S-S---------------------------------------------S----
--------S-------------------------------------------------S---------------------
------------------------------S-------------------------------------------------
-----S-----S---------------------------------------S----------------------------
-------------------------S------------------------------------------------------
--------------------SSS---------------------------------------------------------
-------------------------------------------------------------------------------S
------------------------------------------------------SSSS-S-SSSSS--------------
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-------S----S---------------------------------------------------S---------------
-------------------------------SS-------------------S-----------S------S--------
S--------S---S-------------------S----------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------S-----------------------S-----------------
----------------------------------------------------S------S--------------------
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>forward_422
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--AACCGAACGCTCGTACTGTT----------------------------------------------------------
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>reverse_1872
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-------------------------------AGCAGAGACCTCCCTTCTGT-----------------------------
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>forward_423
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---ACCGAACGCTCGTACTGTTT---------------------------------------------------------
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>reverse_2341
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--------------------GTACAAGGTGACAAGCTGGT----------------------------------------
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