>input_sequence_62717
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---------------------------------------------------------ATGCTCGCCTCCATCTACCGATC
TCTCGCTCGCCGCCGCTCGCACCTTCCGCTTGCCACCGCCGCCGCCACAGCAGCCATGTCGTCGTCTGACACCGCCAGGA
GCGTCTCCGACCGTCCGATCTCTCCGGATACCACACGCATCGGCTGGGTGGGGACGGGCGTCATGGGCCAGTCCATGGCC
GGCCACCTCCTCGCCGCCGGCTACGCGCTCACCGTATACAACCGCACGCCCTCCAAGGCCCAGGGCCTCGTCTCTAGCGG
CGCCCGCCTCGTGGACAGCCCGCGCGCCGCCGCGGCCTCCGCTGACGTCATCTTCCTCATGGTCGGCTTCCCCTCCGACG
TCCGCTCCACGTCCCTCGACCCCTCCACGGGCGCTCTCGCCGGCCTCGCGCTAGGCGGCGTCCTCGTCGACATGACCACC
TCCGACCCCACCCTCGCCGCCGAGATAGCCGCGGCCGCGGCGGGGGCCGGCTGCGCCGCAGTCGACGCCCCGGTGTCAGG
CGGCGACCGGGGCGCCCGCAACGCCTGCCTCTCGATCTTCGCCGGCGGCGACGCGGCCGTGGTGGCCCGCCTGGCGCCCC
TCTTCAAGCTGATGGGCAACGCCCTCTACATGGGCGGGCCGGGCGCGGGGCAGCGCGCGAAGCTGGGCAACCAGATCGCC
ATCGCGTCCACCATGGTGGGGCTGGTGGAGGGCATGGTGTACGCGCACAAGGCCGGGCTGGACGTGGGCAAGTGGCTGGA
GGCCATCTCGACGGGCGCGGCGGGGTCCAAGTCGCTGGAGCTGTACGGGAAGCGGATGCTGGAGCGCGACATGGCGGCCG
GGTTCTACGTCCGGCACTTCGTCAAGGACCTCGGGATCTGCCTGTCCGAGTGCCAGACCATGGGGCTGGCGCTGCCGGGG
CTCGCGCTCGCGCACCAGCTCTACGTGTCGCTGCTCGCCCACGGCGAGGGCGGGCTCGGCACGCAGGCGCTGATACTGGC
AGTCGAGCGGCTCAACAACACCTGCCTTGACAAGAAAGGGGAGTGA----------------------------------
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>chr3A_1_TraesCS3A01G276300
CCGAAGGGAGCACCTCCTCAACGATCTCAGCCACTTCCTCCTCATCGTAGCCTGAAATCAATAACTCACAGATCATGTCG
GAAGGCGTCGAATGCGTCTCCAGCGAGCCGCCGTCCGCCTCCCCATCCTCCTCATCGTCGGCCAGCCCAGAAGCGCCCAC
TGAACTACCGTCGTCCGCTCGGGGTGGAGGCCGAAGTGCACGCATGGGCGTTGGTCGCCCCGGCGGTCGCCTTACCCCTC
ATGTTCACCTTATCCTTCCAGGGCGGGCCTAATTTAGAGCAATGACACATAATGTTGTTTTTACTAAAAAAGACATTTTG
AACAAGAATACTAGATAAAATCTTGATATATTCTCTCAAACATATCTACGCATCATCTGATATATCATTCGATATCCGAC
ATCCGATATGTTCAAGACAAACAAATATAAACACAATAGGAGGGGGGGCGAATTCAAGGAACAAAAGTGATGGTTCAGTT
TTGACGTACCATATGAGTTTGAGGTTTGGTTTAGACTTTACTTAATACTAGTATTAGTAAATGAGCATGTGCAATGCACG
TTGATATCAGGGAGAAAAGCAACTACACGTTGATATTAGGTAGGATATCAGTTACATGTTAATTGATATCAGTTACATTT
AATTATAAAATTAATATAGATGTTGATATATGGTATGCTATCAATTTGCACGCTAAACATGTTGAGAGCTCACCATTAGA
GCAATCTAGATTGTTGGGTTGACATGATTTGATGACTAAAATTAATTGGATCGGCCCCTTTGAATCTTTTTATATTGATG
ATATAGATATAGATATAGATTCATTTAAACCTCAACAAAGTACATAAAAATGACATTTCTCCAGA-TGGACAGGAA----
---GTACCTGGCTGCTATTATGGCCTCACGCGAGGTGCCCCTTATCCGCTGATGTG---------GAGGGCATTTGGGAC
AATTCATAGCACGTCCAGATAATTTTATCAATTATCAGGCCGGCACTCCGCCCCCAAATGCTCGCCTCCATCTACCGATC
TCTCGCTCGCCGCCGCTCGCACCTTCCGCTTGCCACCGCCGCCGCCACAGCAGCCATGTCGTCGTCTGACACCGCCAGGA
GCGTCTCCGACCGTCCGATCTCTCCGGATACCACACGCATCGGCTGGGTGGGGACGGGCGTCATGGGCCAGTCCATGGCC
GGCCACCTCCTCGCCGCCGGCTACGCGCTCACCGTATACAACCGCACGCCCTCCAAGGCCCAGGGCCTCGTCTCTAGCGG
CGCCCGCCTCGTGGACAGCCCGCGCGCCGCCGCGGCCTCCGCTGACGTCATCTTCCTCATGGTCGGCTTCCCCTCCGACG
TCCGCTCCACGTCCCTCGACCCCTCCACGGGCGCTCTCGCCGGCCTCGCGCTAGGCGGCGTCCTCGTCGACATGACCACC
TCCGACCCCACCCTCGCCGCCGAGATAGCCGCGGCCGCGGCGGGGGCCGGCTGCGCCGCAGTCGACGCCCCGGTGTCAGG
CGGCGACCGGGGCGCCCGCAACGCCTGCCTCTCGATCTTCGCCGGCGGCGACGCGGCCGTGGTGGCCCGCCTGGCGCCCC
TCTTCAAGCTGATGGGCAACGCCCTCTACATGGGCGGGCCGGGCGCGGGGCAGCGCGCGAAGCTGGGCAACCAGATCGCC
ATCGCGTCCACCATGGTGGGGCTGGTGGAGGGCATGGTGTACGCGCACAAGGCCGGGCTGGACGTGGGCAAGTGGCTGGA
GGCCATCTCGACGGGCGCGGCGGGGTCCAAGTCGCTGGAGCTGTACGGGAAGCGGATGCTGGAGCGCGACATGGCGGCCG
GGTTCTACGTCCGGCACTTCGTCAAGGACCTCGGGATCTGCCTGTCCGAGTGCCAGACCATGGGGCTGGCGCTGCCGGGG
CTCGCGCTCGCGCACCAGCTCTACGTGTCGCTGCTCGCCCACGGCGAGGGCGGGCTCGGCACGCAGGCGCTGATACTGGC
AGTCGAGCGGCTCAACAACACCTGCCTTGACAAGAAAGGGGAGTGAAA-CTGTGAAAGCCTACGAGAGTTTGGTTGATGC
AATGCAACATGGGAGAATTGTCTC--CTGCTGTTGTTCCCTGGTGTA-TATGGGACTTCTGCATGCTCTGTGTGTTCACG
CTTTACAGTGCTCAAAGGTTCAAATAAGATT-GCAAAAGTGAAGTTTTTCACTTGCATTGATAGTATTCAACTACTG---
------TATTTGGCAAATCAGCCTGTGGTGATTGTCGATCAACCTGGCAGTGAAACAAGAATATTCAATG-AGCTCACCC
TTTGTTAACGGGTTATATCTGCA---------TCAATGTGTTTTTCTTGCTTCAGATGACATCCGTACCATATCAGACTG
ACGCCATTGCCGCACAAGTAAACTGCCGTTTTGTCAATGACTGATATTCTCAGCCTTGAAGAAGCAGATCTTTCAACATC
TCCAACAAACAACATGAGTTCAGGCAACGCTGGCACAGGGCTTAAGGATGCAAATTTGGAACCTACAGGATACCCTCCAA
CCCTGTTTATATTCAACTAAATGAACTAAATTTTCAGAATTCACCTAATAACTTCAGTAAAAATAGTTCATTTGGTTGAA
GGAGGGTATCCTCTAGGTTCCAAATTTGCAACCCTGTCAGGGCTGCGCTTCACCTTGCATCTACCAGGAAAGTTACTAGA
ACCACATATCTTTAACTAAACTACAAAAGCACCAAGTACTCCCTCTGTAAACTAATGTAAGACGTTTTAAATCACTATTA
GTTTACGGAGGGGGTATCTTCATATACTGGAGGAGGGGGTATCTTCATATACTGGAGTGCTGGTTTATTAGCTTCGGAAG
GAGCGCGCATGCTGTGAAGATGTACATAATAGTGCATACGTATAAACACCAAAGTTAAAAACAGAGCAAAACCCATCGCA
GCCAGCGAAGCAAAATAGTCAGCTTACATAAGTTCAAGAGTGCATTACAAAACCAGCATATATATAGTATAACACACTCA
AAAGGAATGTACCATTATGGGAAAGAATTT
>chr3D_844
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-------------------------------------------ATAAAAATGACATTTCTCGAGAATGGACAGGCGGTGC
ACTGTACCTGGCTGCTATTATGGCCTCACGCGAGGTGCCC-TTATCTGCTGATGTGGCAACAACAGAGGGCATTTGGGAC
AATTCATAGCACGTCCAGATAATTTTATCAATTATCAGGCCGGCACTCCGCCCCCAAATGCTCGCCTCCATCTCCCGATC
TCTCGCTCGCCGCCGCCCACGCCTTCCGCTTGCTACCGCCGCCGCCACAGCAGCCATGTCGTCGTCCGACACCGCCGGGA
GCGTCTCCGACCGTCCGATCTCTCCGGATACCACACGCATCGGCTGGGTGGGGACGGGCGTCATGGGCCAGTCCATGGCC
GGCCACCTCCTCGCCGCCGGCTACGCGCTCACCGTATACAACCGCACGCCCTCCAAGGCTCAGGGCCTCGTCTCTAGCGG
CGCCCGCCTCGTGGACAGCCCGCGCGCCGCCGCGGCCGCCGCTGACGTCATCTTCCTCATGGTCGGCTTCCCCTCCGACG
TCCGCTCCACTTCCCTCGACCCCTCCACGGGCGCTCTCGCAGGCCTCGCCCCAGGCGGCGTCCTCGTCGACATGACCACC
TCCGACCCCACACTCGCCGCCGAGATAGCCGCGGCCGCGGCGGGGGCCGGCTGCGCCGCAGTGGACGCCCCCGTGTCAGG
CGGCGACCGGGGCGCCCGCAACGCCTGCCTCTCGATCTTCGCCGGCGGCGACGCGGCCGTGGTGGCCCGCCTGGCGCCCC
TCTTCAAGCTGATGGGCAACGCCCTCTACATGGGCGGGCCGGGCGCGGGGCAGCGCGCGAAGCTGGGCAACCAGATCGCC
ATCGCGTCCACCATGGTGGGCCTGGTGGAGGGCATGGTGTACGCGCACAAGGCCGGGCTGGACGTGGGCAAGTGGCTGGA
GGCCATCTCCACGGGCGCCGCGGGGTCCAAGTCGCTGGAGCTGTACGGGAAGCGGATGCTGGAGCGCGACATGGCGGCGG
GGTTCTACGTCCGGCACTTCGTCAAGGACCTCGGGATCTGCCTGTCCGAGTGCCAGACCATGGGGCTGGCGCTGCCGGGG
CTCGCGCTCGCGCACCAGCTCTACGTGTCGCTGCTCGCCCACGGCGAGGGCGGGCTCGGCACGCAGGCGCTGATACTGGC
AGTCGAGCGGCTCAACAACACCTGCCTTGACAAGAAAGGGGAGTGAAAACTGTGAAAGCCTACAAGAGTTTGGTTGATGC
AATGCAACATGAG-GAATTGTCTCCTCTGCTGTTGTTCCCTTGTGTATTATGGGACTTCTGCATGCTCTGCCTGTTCATG
TTTTACAGTGCTCAAAGGTTCAAATAAGATTTGCAAAAATGGAGTTTTTCACTTGTATTGATAGTATTCAAC--------
TACTCCTATTTGGCAAATCAGCCTGTAGTGAATGCCGATCTACTTGGCAGTGAAACTAGAATATTCAATG-AGCTCACCC
TTTGTTAACGGGTTATATAACTTACATTTGCCTCAATGTGTTTTTCTTGCTTCAGATGACATCCCTGCCATATCAG----
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>chr3B_845
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--------------------------------------------TAAAAATGACATTTCTCGAGAATGGACAGGAGGTGC
ACTGTAACTGGCTGCTATTATGGCCTCACGCGAGATGCCC-TTATCTGCTGATGTGGCAACAACAGAGGGCATTTAGGAC
AATTCATAGCACGTCCAGATAATTTTATCGATTATCAGGCCGGCACTCCGCCCACAAATGCTCGCCTCCATCTCCCGATC
TCTCGCTCGCCGCCTCCCGCGCCTTCCGCTTGCCACCGCCGCCGCCACAACAGCCATGTCGTCGTCCGACACCGCCGGGA
GCGTCGCCGACCGTCCGATCTCTCCTGATACCACACGCATCGGGTGGGTGGGGACGGGCGTCATGGGCCAGTCCATGGCC
GGCCACCTCCTCGCCGCCGGCTACGCGCTCACCGTATACAACCGCACGCCCTCCAAGGCCCAGGGCCTCGTCTCTAGCGG
CGCCCGCCTCGTGGACAGCCCGCGCGCCGCCGCGGCCGTCGCTGACGTCATCTTCCTCATGGTCGGCTTCCCCTCCGACG
TCCGCTCCACGTCCCTCGACCCCTCCACGGGCGCTCTCGCCGGCCTCGCCCCAGGCGGCGTCCTCGTCGACATGACCACC
TCCGACCCCACCCTCGCGGCCGAGATAGCTGCGGCCGCGGCGGGGGCCGGCTGCGCCGCAGTCGACGCCCCCGTGTCAGG
CGGCGACCGGGGCGCCCGCAACGCCTGCCTCTCGATCTTCGCCGGCGGTGACGCGGCCGTGGTGGCCCGCCTGGCGCCCC
TCTTCAAGCTGATGGGCAACGCCCTCTACATGGGCGGGCCGGGCGCGGGGCAGCGCGCGAAGCTGGGCAACCAGATCGCC
ATCGCGTCCACCATGGTGGGACTGGTGGAGGGCATGGTGTACGCGCACAAGGCCGGGCTGGACGTGGGCAAGTGGCTGGA
GGCCATCTCCACGGGCGCCGCGGGGTCCAAGTCGCTGGACCTGTACGGGAAGCGGATGCTGGAGCGCGACATGGCGGCCG
GGTTCTACGTCCGGCACTTCGTCAAGGACCTCGGGATCTGCCTGTCCGAGTGCCAGACCATGGGGCTGGCGCTGCCGGGG
CTCGCGCTCGCGCACCAGCTCTACGTGTCGCTGCTTGCCCACGGCGAGGGCGGGCTCGGCACGCAGGCGCTGATACTGGC
AGTCGAGCGGCTCAACAACACCTGCCTTGACAAGAAAGGGGAGTGAAA-CTGTGAAAGCCTACGAGAGCTTGGTTGATGC
AATGCAACACGAGAGAATTGTCTC--CTGCTG-TGTTCCCTTGTGGA-TATGGGACTTCTGCATGCTCTGTCTGTTCATG
CTTTACAGTGCTCTAAGGTTCAAATAAGATT-GCAAAAATGGAGTTTTTCACTTGTATTGATAATATTCAACTACTCCTA
TAGTCCTATTTGGCAAATCAGTCTGTAGTGATTGTCGATCAACTTGGCAGTGAAACTAGAATATTGAATGTAGCTCACCC
TGTGTTAACGGGTTAT---------ATTTGCCGCAATGTGTTTTTCTTGCTTCAGAT-----------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-------------S----
----------------------------------------S-----S---------------------------------
-------------------------------------------------------------------------S------
----------------S---S---------------------------------------------S---------S---
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-------------------------------------------------S-S----------------------------
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--------------------S-----------------------------------------------------------
---------S--------S-------------------------------------------------------------
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-----------S-----------------------------S-----------------------------S------S-
--------------------------------------S--S-------------S--------------------S---
--------------------------S----------------S------------S-----------------------
------------------SSSSS-----------------------------------------S-S---------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_168
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--------------------------------------------------------------------AGAAGCGCCCAC
TGAACTAC------------------------------------------------------------------------
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>reverse_1318
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-------------------------------------TCCGCTGACGTCATCTTCCT-----------------------
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>forward_786
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----------------------------------------------TGGATCGGCCCCTTTGAATC--------------
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>reverse_2407
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------TTGCCGCACAAGTAAACTGC------------------------------------------------------
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