>input_sequence_62693
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-------------------------------------------------ATGAACGACCTTTTCTCGACGAACTCGTTCA
AGAAGTATGCGGACGCGAACCCGGAGACGTCGTCGGCCGACATGGAGGCCGGCGGCATGAACGGCGCGAACCTGGACCAG
TTCTTCTCGGACGTGGAGGCTGTGAAGGAGGACTTAAAGGGCTTCGAGACCCTGCACAAGCGGCTGCAGTCCACCAACGA
GGAGACCAAGACGGCGCACGACGCCCGCACCATCAAGGCCCTCCGCTCCCGCATGGACGGCGACGTCGAGCAGGTGCTCA
AGCGCGCCAAGGCCGTCAAGGCCAAGCTCGAGGCGCTCGAGCGCGACAACGCCAACTCCCGCAAGGCGCCCGACTGGGGC
CCCGGGTCCTCCGTCGACCGAACCCGCACCTCTGTCGTCGCCGGCCTCGGCAAGAAGCTCAAGGATATCATGGACGACTT
CCAGGTAATTTGATCCGTCTAAACATGCTTGCATTGGACGCCTCGGGCGTGAATATATGTGCATGAATGACGAGAACCTG
T----GGCGTTGCCGGTGCATGCTCTATTCCGCGCAGGGGCTGAGGGCGAAGATGGCGGCGGAGTACAAGGAGACGGTGG
CGCGGCGGTACTTCACGGTGACGGGCGAGCACGCGGAGGAGAGCACGATCGACTCGCTCATCTCGTCCGGGGAGAGCGAG
TCGTTCCTGCAGAAGGCGATCCAG---GACCAGGGGCGCGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGCA
CGACGCTGTCAAGGACATCGAGCGCAGCCTCATGGACCTGCACCAGGTGTTCCTTGACATGGCGGCGCTCGTCGAGGCGC
AGGGGCACCAGCTCAACGACATCGAGAGCCACGTCGCGCACGCCAGCTCCTTCGTGCGCCGGGGCACCGTCGAGCTGGAG
CAGGCGCACGAGATCCAGAAGGACACCCGCAAATGGATGTGCTTCGCCGTCATCGGGGGCATCGCGCTCGTCGTCGTCGT
CGTCACGCCGGTGCTCATCAACCTCCACATCTTGACGCTCAGATGA----------------------------------
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>chr7B_1_TraesCS7B01G260100
AACCCCCCTCCCATAACTCAGGCAAGATGGCCTACAGTACCTTCGCCGATGGAACATAGATCGTAACTCAACATGTTTCA
CCTATCCAGTAAAGAAAACTACCTACGACATGCACCATGTCCTCAACTAGCGGAACAAACATCCCAATGCACAAAGCGAC
ACTGAATCCACACGACAGTTAATCGAATCCCGACCACCTTCTCATTCAAT----TTTTTTTTATGTCGGAGGCCCATGAT
CCTGACATTATTGAACTATATGCCATGTTTCTATCACTGATTAGAAAGCTCTCACATGTAAAACATCAAGGCAAATCATG
TGTGTTTATAGACATACTGAACTGACAAAATGAGAGGCTTCTACAAAATTCCCCGCGCGGGACGAAGAGGAATGACAGGT
GAAGGCCATAAAGGATTCAGAAACAGAGGACATATCCATCACCGCTCTCGAATACGAGCCGGTTCGAGAGAAACCTGTAT
AAAAGCAAAGTGGCTTGGACAAAAATATAGGAGTCATGCTCTGATATGCACGCCCAAATCCAACTAATGGAAATTCGACT
GCGTGCGAAATGTAAAACAACTAAAGCAGCGACAAGTAATATGGATGGAAGGGAGTACTTGCTTTTTAGG-----AAAAT
ATAAAATAAAGGTGATTTCAAAGTAAAATAAAAGTGACGCTAACAACAAAGAAGTCACCGGTGGTAAAAATGACTAGACG
AAGACCCCGGGAAGACAAGGAGAAGCCGTTCATGCCATGCTGCCACAAATAGGGAGAGAGAGAGCATCCCTCCTACGGGA
GAGGGAGACCTTCCTTTCTTCACAACACGTTGATGATCGATTGCTCGTTTCTTGGACCTACGCCTTCCCGGGAGCGGCAA
GCCATTGCCATTCTTCCAAACTCAATCCCCTCCCGGTGTCCCACGTTCCGCCTTGCCGTGCGTACGCTCAGCTGCCGCCG
CGTTTCGGTCGGCGTTCTTGGTTGCGCACTCCGTCAATTAGCGTCCAAGATGAACGACCTTTTCTCGACGAACTCGTTCA
AGAAGTATGCGGACGCGAACCCGGAGACGTCGTCGGCCGACATGGAGGCCGGCGGCATGAACGGCGCGAACCTGGACCAG
TTCTTCTCGGACGTGGAGGCTGTGAAGGAGGACTTAAAGGGCTTCGAGACCCTGCACAAGCGGCTGCAGTCCACCAACGA
GGAGACCAAGACGGCGCACGACGCCCGCACCATCAAGGCCCTCCGCTCCCGCATGGACGGCGACGTCGAGCAGGTGCTCA
AGCGCGCCAAGGCCGTCAAGGCCAAGCTCGAGGCGCTCGAGCGCGACAACGCCAACTCCCGCAAGGCGCCCGACTGGGGC
CCCGGGTCCTCCGTCGACCGAACCCGCACCTCTGTCGTCGCCGGCCTCGGCAAGAAGCTCAAGGATATCATGGACGACTT
CCAGGTAATTTGATCCGTCTAAACATGCTTGCATTGGACGCCTCGGGCGTGAATATATGTGCATGAATGACGAGAACCTG
T----GGCGTTGCCGGTGCATGCTCTATTCCGCGCAGGGGCTGAGGGCGAAGATGGCGGCGGAGTACAAGGAGACGGTGG
CGCGGCGGTACTTCACGGTGACGGGCGAGCACGCGGAGGAGAGCACGATCGACTCGCTCATCTCGTCCGGGGAGAGCGAG
TCGTTCCTGCAGAAGGCGATCCAG---GACCAGGGGCGCGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGCA
CGACGCTGTCAAGGACATCGAGCGCAGCCTCATGGACCTGCACCAGGTGTTCCTTGACATGGCGGCGCTCGTCGAGGCGC
AGGGGCACCAGCTCAACGACATCGAGAGCCACGTCGCGCACGCCAGCTCCTTCGTGCGCCGGGGCACCGTCGAGCTGGAG
CAGGCGCACGAGATCCAGAAGGACACCCGCAAATGGATGTGCTTCGCCGTCATCGGGGGCATCGCGCTCGTCGTCGTCGT
CGTCACGCCGGTGCTCATCAACCTCCACATCTTGACGCTCAGATGATTTCCACCGGACGTCGTCCATGTGAAAACCCTGC
CCCCTC--------------------------------------------------------------------------
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CCCTGCTCCACACTTTTAATCTGTGACTGATCACACTGTCAAGGACTTTGTTTTCGTT-TTCGTTTCCAGCGGTGCACTT
CATTTTCGTAGATGTAGCCTACAAAACTTTGTACTACATGATTGAGAAAACACAGGGAGGATGTATATTGTAGTGATGTA
CCAGTTTAATTCTTGATCAAGCTTTTTTTTCAATCGAGAATACTGTAAATTATGTCTCTCTCTTTTTCTCTTGAAAAATA
GATCCAGACGAGCTGGCATGAATTAATTTTGAGTTATTTAAGTAACAAACTCAATCGAGGAACTTAAGGGCCTCAGTTTA
AGGCCGGTCAGATGCCTCCTTTCTAAAAAAAGGATAATAAACATGGGTCTGTCTAGGACACATCTATATGTGACATAATT
AAGTCACATCTAACTTGATGCCCACTATGTTTGTGGTCTAGTTTTTTTTGTCCTAACTTTTTTTTGTTCCTTGTTGCTAC
CTTATTTGTGGGAGCTTAGATATGACATCCTTAGAAAACATCTAGATGTGAATTAGACAAACTGAACAAACATACAACAA
AACTAAAACACCGCAATCAAGGAATATTATGACGCCCCCGATTCAATCGTACACTAATCATGCACGCAAACGTGTACGAT
CAAGATCAGAGACTCACGGAAAGATATCACAACACAACTCTAAAGTAAAATAAGTCATTCTAGCATCATATTACAAGCCG
GGGGCCTCGAGGGCTCGAATACAAGTGCTCGAACATAGACGAGTCAGCGGAAGCAACAATATCTGAGTACAGACATAAGT
TAAATAAGTTGCCATAAGATGGCTAGCACAAACTGGGATACATATCGAAAGAGGCGCGAGCCTCCTGCCTTGGATCCTCC
TAAACTACTCCTGGTCGTCGTCAGCGGCCTGCACGTAGTAGTAGGCAGCTCCAGTGTAGTAGGAGTTGTCATCGACAGTG
G
>chr7A_3
--CCCCCCTCTGGTAACTCGGTCAAGATGGCCTACAATGCCTCCACCAATGGAACATTGATCGTACCTCAACATGTTTTA
CCTATTCAATGAAGAAAACTACCAACGACATCCATTATGTCCCTAACTAGCAGAACAAACATCCCACTGCATAAATCATC
ACTAAATCCCCACAGCAGTTAATCGAATCCAGACCACTTTTATCTATTTTTTTCTTTTTCTGATGCAGTAGGCCCTTGAT
CCTGACATTATTGAACTATATGCCTTATTTCTATCACCGATCAGAAAACTCTCACATGTAAAACATCAAGGCAAATCATA
TGTGCGGACACACATACTGAACTAACAAAATGAGAGGCTTCTACAAAATTCCCCGCGCGGGATGAAGAGGAATGACATGT
GAACACCTAG-AGGATTCAAAAACAAAGGACATCTCTATCATCGCCCTCGAATCCGAGCCGGTTCGGGAGAAACATATAT
AAAACCAAATAGCTCGGACAAAAAGTATAGGGGACATG--CTGAGATGCCCACCCAAATCCAATTAATGGAAATTTGACC
GTGTGCAAAATGTGAAACAACTAAAGCAGCGACAA---------------------------------------------
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>chr7D_538
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-------------------------------------------------------------AACTAATGGAAATTTGACC
GTGTGAGAATTGTGAAACAACTAAAGCAGCGACAAGTAATATGGATGGGATGGAGTACTTGTCTTTTTAGAAAACAAAAT
GTAAAATAAAGGAGATTTCAAAATAAAATAAAAGCGACGCTGACAACAAAGAAGTCACCGGTGGTAAAAATGACTAGACG
AAGACCCCGGGAAGACAAGGAGAAGCCGTTCATGCCATGCTGCCACAAATAGGGAGAGAGAGAGCATCCCTCCTACGGGA
GAGGGAGACCTTCCTTTCTTCACAACAC-TTGATGATCGATTGCTCGTTTCTTGGACCTACGCCTTCCCGGGAGCGGCAA
GCCATTGCCATTCTTCCAAACTCAATCCCCTCCCAGTGTCCCACGATCCGCCTTGCCGTGCGTACGCTCAGCTGTCGCCG
CGTTTTGATCGGCTTTCTGGGCTGCGCACTCCGTTAATTAGCGTCCAAGATGAACGACCTTTTCTCGACGAACTCGTTCA
AGAAGTATGCGGACGCGAACCCGGAGACGTCGGCGGCCGACATGGAGGCCGGCGGCATGAACGGGGCGAACCTGGACCAG
TTCTTCTCGGACGTGGAGGCTGTGAAGGAGGACCTAAAGGGCTTCGAGACCCTGCACAAGCGGCTGCAGTCCACCAACGA
GGAGACCAAGACGGCGCACGACGCCCGCACCATCAAGGCCCTCCGCTCCCGCATGGACGGAGACGTCGAGCAGGTGCTCA
AGCGCGCCAAGGCCGTCAAGGCCAAGCTCGAGGTGCTCAAGCGCGACAACGCCAACTCCCGCAAGGCGCCCGACTGGGGC
CCCGGGTCCTCTGTCGATCGAACCCGCACCTCTGTCGTCGCCGGCCTCGGCAAGAAGCTCAAGGATATCATGGACGACTT
CCAGGTAATTTGATCCGTCTAAACATGCTTGCATTGCGCGCCTCGGGCGTGAATATACGTGCACGAATGACGAGAACCTG
TGACCGGCGTTGCCGGTGCATGCTCTATTCCGCGCAGGGGCTGAGGGCGAAGATGGCGGCGGAGTACAAGGAGACGGTGG
CGCGGCGGTACTTCACGGTGACGGGCGAGCACGCGGAGGAGAGCACGATCGACTCGCTCATCTCGTCCGGGGAGAGCGAG
TCGTTCCTGCAGAAGGCGATCCAG---GACCAGGGGCGCGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGAG
CGACGCCGTCAAGGACATCGAGCGCAGCCTCATGGACCTGCACCAGGTGTTCCTCGACATGGCGGCGCTCGTCGAGGCGC
AGGGGCACCAGATCAACGACATCGAGAGGCACGTCGCGCACGCCAGCTCCTTCGTGCGCCGGGGCACCGTCGAGCTGGAG
CAGGCGCACGAGATCCAGAAGGACACCCGCAAATGGATGTGCTTCGCCGTCCTCGGGGGCATCGCGCTCGTCGTCGTCCT
CGTCACGCCGGTGCTCATCAACCTCCACATCTTGACGCTCAGATGATTTCCGCCGGACGTCGTCCATGTGAAAACCCTGC
CCCCTC--------------------------------------------------------------------------
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CCCTGCTCCACACTTTTTATCTGTGACTCGTCACACTGTCAAGGACTTTGTTTTGGTT-TTCGTTTCCAGCGGTGCACTT
TATTTTCGTAGATGTAGCCTACAAAACTTTGTACTACTTGATTGAGAAAACACAGGGAGGATGTATATTGTAGTGATGTA
CCAGTTTAATTCTTGATCAAGCTTTTTTCTCAATCGAGAATACTGTAAATTATGTCTCTCTCTTTTTCTCTTGAAAAATA
GATCCAGACGAGCTGCCATGATTTAATTT---------------------------------------------------
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>chr7A_659
ATAT----------------------------------------------------------------------------
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-------------------------------AAGTGGCGCTAGCAACAAAGAAGTCACCGGTGGTAAAAATGACTAGACG
AAGACCCCGGGAAGACAAGGAGAAGCCGTCCATGCCATGCTGCCACAAATAGGGAGAGAGAGAGAATCCCTCCTACGGGA
GAGGGAGACCTTCCTTTCTTCACAACAC-TTGATGATCGATTGCTCGTTTCTTGGACCTACGCCTTCCAGGGAA-GGCAA
GCCATTGCCATTCTTCCAAATTCAATCCCCTCCCAGTGTCCCACGATCCGCCTTGCCGTGCGTGCGCTCAGCTCTCGCCG
CGTTTTGATCGGCGTTCTGGGCTGCGCACTCCGTTAATTAGCGTCCAAGATGAACGACCTTTTCTCGTCGAGCTCGTTCA
AGAAGTATGCGGACGCGAACCCGGAGACGTCGGCGGCCGACATGGAGGCCGGCGGCATGAACGGGGCGAACCTGGACCAG
TTCTTCTCGGACGTGGAGGCCGTGAAGGAGGACTTAAAGGGCTTCGAGACCCTGCACAAGCGGCTGCAGTCCACCAACGA
GGAGACCAAGACGGCGCACGACGCCCGCACCATCAAGGCCCTCCGCTCCCGCATGGACGGCGACGTCGAGCAGGTGCTCA
AGCGCGCCAAGGCCGTCAAGGCCAAGCTCGAGGCGCTCAAGAGCGACAACGCCAACTCCCGCAAGGCGCCCGACTGGGGC
CCCGGGTCCTCCGTCGACCGAACCCGCACCTCCGTCGTCGCCGGCCTCGGCAAGAAGCTCAAGGATATCATGGACGACTT
CCAGGTAATTTGATCCGTCCAAACATGCTTGCATTGCGCGCCTCGGGCGTGAGTGTACGTGCATGAATGACGAGAACCTG
TGGCCGGCGTTGCCGGTGCATGCTCTACTCTGCGCAGGGGCTGAGGGCGAAGATGGCGGCGGAGTACAAGGAGACGGTGG
CGCGGCGGTACTTCACGGTGACGGGCGAGCACGCGGAGGAGAGCACGATCGACTCGCTCATCTCGTCCGGGGAGAGCGAG
TCGTTCCTGCAGAAGGCGATCCAG---GACCAGGGGCGCGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGAG
CGACGCCGTCAAGGACATCGAGCGCAGCCTCATGGATCTGCACCAGGTGTTCCAAGACATGGCGGCGCTGGTGGAGGCGC
AGGGGCACCAGCTCAACGACATCGAGAGCCACGTCGCGCACGCCAGCTCCTTCGTGCGCCGGGGCACCGTCGAGCTGGAG
CAGGCGCACGAGATCCAGAAGGACACCCGCAAATGGATGTGCTTCGCCGTCCTCGGCGGCATCGCGCTCGTCGTCGTCCT
CGTCACGCCGGTGCTCATCAACCTCCACATCTTGACGCTCAGATGATCTCCGCCGGACGTCGCGCGTCCATGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCCTGCTCCACACTTTT-ATCTGTGACTCGTCATACTGTCAAGGACTTTGTTTTCCTAATTCGTTTCCAGCGGTGCGCTT
TATTTTCGTAGATGTAGAG-----------------CTTGATTGAGAAAACACAGGGAGGATGTATATTGTAGTGATATA
CCAGTTTAATTCTTGATCAAGCTTTTTCC-CAATCGGGAATACTGTAAATTGTGTGTCTCTTC--TTCTGTTGAAAGATA
GATCCAGACCGAGTGGCATGAATTAATTTTGGGTTATTTAGAACATCTCAAT----------------------------
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>chr6D_995
TCCG----------------------------------------------------------------------------
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-----------------------------------------------AGATGAACGACCTCTTCTCGTCGAGCTCGTTCA
AGAAGTATGCCGACCTGAAGGACCAGGTGGCGCTGGACGAGATGGAGGCCGGCGGC------GGCGCCAACCTCGACATG
TTCTTCGAGGACGTGGAGGGCGTCAAGGAGGACATCCGCAGCCTCGAGGCCATGCACCGCCGGCTGCAGTCGGTGAACGA
GGAGAGCAAGACCGCCCACGACGCCCGCGCCGTCAAGTCCCTCCGCGCCCGCATGGACGGCGACGTCGAGCAGGTCCTCC
GCCGCGCTAAGGTCGTCAAGGCCAAGCTCGAGGCCCTCGACCGCGCCAACGCCGCCAGCCGCAAGCTCCCCGGCTGCGGT
GCCGGCTCCTCCACCGACCGCACCCGCTCCTCCGTCGTCTCCGGCCTCGGCAACAAGCTCAAGGACCTCATGGACGACTT
CCAGGTAAACACGTACTGCGTTTATCTTGCTTCATTCCCTCGCCGCGCGCTGGTCAGCTACCTGACCGGAGAGAGT----
---------------------------------GCAGGGCCTTCGGACGCGGATGGCGGCGGAGTACAAGGAGACGGTGG
CGCGGCGGTACTACACGGTGACGGGGGAGACGGCGGAGGAGAGCACGATCGATGCGCTCATCTCGTCGGGGGAGAGCGAG
ACGTTCCTGCAGAAGGCGATCCAGCGGGACCAAGGGCGCGGGCAGGTGATGGCCACGGTGTCGGAGATCCAGGAGCGGCA
CGACGCCGTGAAGGACATCGAGCGCAGCCTGCTGGAGCTGCACCAGGTGTTCCTGGACATGGCGGCGCTGGTGGAGGCGC
AGGGCCACCAGCTCAACAACATCGAGACCCACGTCGCGCGCGCCAGCTCCTTCGTGATCAGGGGCACCGTGGAGCTCGAC
TCCGCGCGCGTCTACCAGAAGAGCAGCCGCAAGTGGGCCTGCATCGCCGTCGTCGCCGGCGCCGTGCTCGTCCTCGTCAT
CGTGCTGCCGATACTCGTCAACCTCAAGCTCTTGAGCGGCAGATAGAT--------------------------------
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>SNPs
-S--------SSS------S-S--------------S-S---S-S--S---------S-------S------------S-
-----S--S-S------------S-------S--SS------SS-------S--------------S----S---S-SS-
---S-----S---SS---------------S------S--SSSS-SSSS----------S-S---SS-S------S----
------------------------S-S----------S---S-----S-------------------------------S
----SSS-S-S------------S--------------------------------------S--------------S--
---SS--SSSS--------S-----S-------S--S----S---S-------S------------S-------S-S---
----S----SS-SSSS-SSS----S------S-S----SS----S----S-S-----------------------S---S
-S-----------S----------------------------------S-S----------SS----SS-----------
S-----------S---------S---------------------------------------------------------
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----------------------------S---------------------------------------------------
----------------------------------S----------S----------------------------S-----
-----S-S----------S--S------------S---------------------------------------------
--------------------------------S-----------------------------------------------
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------------------------------------SS-------------------S----------------------
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------S-----------------------------------------------S-------------------------
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---------------------------------------------------S--------------------------S-
---------------------------------------------------S----------------------------
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-----------------S----------SS--------------------------------------------------
S------------------------------------S------------------------------------------
----------------------------S---------------------------------------------------
-------------------------------S--------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_408
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--------------------------------------------------------------------GGAATGACAGGT
GAAGGCCA------------------------------------------------------------------------
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>reverse_2631
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----------------------------------------------------------------------CCTCAGTTTA
AGGCCGGTCA----------------------------------------------------------------------
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