>input_sequence_62686
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---------ATGGCTGCCACCAGCCTCGGTTCCTCTCCCTCCAAGACTGCCACTGCCAAAGTAAGCTCCCG-------CT
TCATCTTCTTCCTTCCCATCCTTTTTCACTCCTCAAGCTGCTAGGAATCGTGTCGTCGTTTGAAT---TCTCTGCTTCAA
TATTTTTTTTTAAATTATAGCCAAAGTTATGCCGGCCATGCCTCTTGTTGTAACGAGTTTAGTGCACGAAAAGATTGAAA
TTCTGCTGCTCAGTTCAGTTCGTATCTTGAA-------------------------------TT-ATCTTGACAAGTTCC
CAGCTAGTTGTTGGACTATCTAG--------AATCACAGCAAAAATTGTTGGCGAAATGAGATAATTAGCTTACTGAATC
TTTGGTTCTTGGCGCAACCGGATGTGTATGTACAACAGCTAGGAGGCATCTCCAGATCTTCCCCGTCCTACACCCAGCTC
GCCTTCTGCTCCAGGCATGCTTTCCACAAGATAGGAACCGCTGCCGCCCCGCAAAGGCCTCAGAATGAGCTCAAGCACGC
AAGACCCTGCGCGACCACGGACAACGACCGGGCGGCGCCGGCGGAGGCGCAGG---AAAGTACAACCATCAGCGCTGGCG
TGAACCCGGTGGCGTCCGGCAACGGCCAGCAGCCGCAGCCGGGCGAACCGCCGAAGCGGGTGCCGCTGACGGCGCGGGAG
CGGCTGCGCGCGGCGCGCGTGCTGGGCAAGTACGCGGAGCCAGGGGGCGGGGCGTCGCCGGCGGACAAGAAGGGCTCTTC
A------TCGTCCAAGCCGGAGTTCGGGAGCCGGGTGCTGGACGCGCTGCGGGAGACGGACGGCGGGAAGAAGGGCGGGC
GGAAGCGGTCGGGGCTGCCGGAGGCGCCGAGCAACCTGCTGGACGACACCAAGCGCGGCATGCCCAAGGACGGGTGGACG
TTCGACTGGCTGGCGGCGCTGCCCGTGGGCACGGACGTGCTCATCGTCGCCGCGTCCTTCGGGATCATCACCACCGTCAT
GTTCGGGACCACGTACCTCGTGTGGAAGCTCGGCGCCATACATTTCAACGAGTACTGA----------------------
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>chr4B_1_TraesCS4B01G193400
AGGTTTGTTTCCCCCTTAAAGCCAATTTGACGATATGCGGAAGCATCAAACTGCTTGTTCTTCCTGCCTAGCCACATTAT
CTACTCCCTCTGTTCGGAATTACTTGTCGCAGAAATGGATGTATCTAGACATATTTTAGTTCTAGATACATCCATTTTCA
CGACAAGTAATTCCGAACGGAGGGAGTAGCTTCTAACGCATGTCTTGTCGCCTTG-TGTTTTCTGCATCCAGATATCTCA
GAAGACTCTGATCAGGGGTCAGAGCTACAACTCTGGAAACGCAATCACCTACGCCTTGTTGGACGGCAACAAACAATCTG
CGTTCCTGTCCTCGTTCGACAAGTCCGGATACAAGTCGTCCGATAAGCTCCTTATCGCGTACAAGCCTCGCCGGGGGAGG
TTCGCTGTGTATAAGGGTGAGGTGTCAATGGAAGAAGCTGAAAGGTTTGTGGTTTCCGTCCTGAATGGAGATGTGCAGTT
GTCGGCAACTGGAGAGAAGCCAGTTCTTAGGTAGAAGAAGGCTAGGGTTGCAACTCGCAAGCATTGTTTTCTCGAAATGG
TTGCAAGTAATTT-AGTCTTTAGGGGATGTAGT--GTGTGATCTGAGAGGGCCTGTACATAGTTGAATCAATCAAGA---
--GAGTAAAATGT-AAACTGTCGACTCAGATTTGTGGACTGGGTTACGGGAATACATACTGACATGTTACTATGTATACA
TGTGCATAGTTCTCTGGCTTCTTTATTTTAGGGAAATTTCTCTGGCTTTGTCAGTAGTTCAGTACAACATCCTGTGGCCA
TAGTTTTTTTATTTTTTGA---------------------------GAACTTCCTGTGGCCATAGGTGTGGACCGTGTTC
ACTACAA-----TACTACTACAGCGTACCGTTAGCACCAACAAATCGGCCCGGCCCAACAAGCTGCCTGATGTAAGCAGT
CGTCC-CC------TACGGGATGGCCTCACAAATTCTATCTCTTCTGGCCTAGAGCACAAAATGCAGTGGCCGAGCAGGT
GAGAAGAAGATGGCTGCCACCAGCCTCGGTTCCTCTCCCTCCAAGACTGCCACTGCCAAAGTAAGCTCCCG-------CT
TCATCTTCTTCCTTCCCATCCTTTTTCACTCCTCAAGCTGCTAGGAATCGTGTCGTCGTTTGAAT---TCTCTGCTTCAA
TATTTTTTTTTAAATTATAGCCAAAGTTATGCCGGCCATGCCTCTTGTTGTAACGAGTTTAGTGCACGAAAAGATTGAAA
TTCTGCTGCTCAGTTCAGTTCGTATCTTGAA-------------------------------TT-ATCTTGACAAGTTCC
CAGCTAGTTGTTGGACTATCTAG--------AATCACAGCAAAAATTGTTGGCGAAATGAGATAATTAGCTTACTGAATC
TTTGGTTCTTGGCGCAACCGGATGTGTATGTACAACAGCTAGGAGGCATCTCCAGATCTTCCCCGTCCTACACCCAGCTC
GCCTTCTGCTCCAGGCATGCTTTCCACAAGATAGGAACCGCTGCCGCCCCGCAAAGGCCTCAGAATGAGCTCAAGCACGC
AAGACCCTGCGCGACCACGGACAACGACCGGGCGGCGCCGGCGGAGGCGCAGG---AAAGTACAACCATCAGCGCTGGCG
TGAACCCGGTGGCGTCCGGCAACGGCCAGCAGCCGCAGCCGGGCGAACCGCCGAAGCGGGTGCCGCTGACGGCGCGGGAG
CGGCTGCGCGCGGCGCGCGTGCTGGGCAAGTACGCGGAGCCAGGGGGCGGGGCGTCGCCGGCGGACAAGAAGGGCTCTTC
A------TCGTCCAAGCCGGAGTTCGGGAGCCGGGTGCTGGACGCGCTGCGGGAGACGGACGGCGGGAAGAAGGGCGGGC
GGAAGCGGTCGGGGCTGCCGGAGGCGCCGAGCAACCTGCTGGACGACACCAAGCGCGGCATGCCCAAGGACGGGTGGACG
TTCGACTGGCTGGCGGCGCTGCCCGTGGGCACGGACGTGCTCATCGTCGCCGCGTCCTTCGGGATCATCACCACCGTCAT
GTTCGGGACCACGTACCTCGTGTGGAAGCTCGGCGCCATACATTTCAACGAGTACTGATTAATCAAGCCTGTTTGGCTTT
CTCTGCGTGGTTCTGTAAAAATAATGCCGTCTATCGTA--ATGATGAGGCAGATTTTGAGCACAGGAA--TACACCGTGA
TTTGTAAGAATTAAACCCAACGATTTTGCTGGAGTATTATAGAAAACGTTTCATAGA--TGTTAAGTAACTTTTCTGTGT
GCCCCTGAACATCTAAGTGGCTGTGGTTTAGTGGTGAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAG
CAGCCACACCTCACTATTTTTTATTTTTGCTTTTCCAATCCTTCTTTTACATAACGCTGAACGATTAACGGCTCTGATTA
GCTTAGCTCTTATGGAGGCGCTGACAGCCAGACCCCAGACCGTTTGCACGTCGGCCCCCACCCATCCCCTCTTCTCC---
-------CCCCACTTCCGCCATAGCCGATTAGCCGCCGGCGAGAGGCCCCCGGTCCCTCTCCTTTGGAGTTTCTGCGGGA
ATGGATCCCGGCGAAGGCGGTTCCCCTGCCGCTCCATCGACTTCCGTTGCAGCCCCAGGTGATTTTTGCCCC-TTTTCCT
CGTCTAATCGATCGAACCAGTGCCACCCGTCGACGCTAAAACCCTAGCGCGCCGCTGTCTCTAACCATTCCGTGCAGGCG
CGGACGCGGACACGAGGGAGGACGCCGGGAAGCAGGTGGTGGTGATTCTCGTCGGCCCCCCGGGCAGCGGCAAGTCCACG
TTCGCCGAGGCCGTCATGGCCGGTGCCGCCGCTGCTGGCCGCCCATGGGCCCGCGTCTGCCAGGTGCGCCCCACGCGCTC
CATTCTCTCTACGTGATAATTTGCTCAGCGTTGGTGCCATTGCTTTCCGTCTCAGTTGTGAATTTGATGTCTCTAGACAA
GCATTCCGTAATGCCTAATGCGGGCTCATCTGATTGGGCTTTGAAATTGCCTATATTTTGCATAATTTTTTAATGGATCA
CTACTTTG-AAACCGTAGTTTCAGTCTCATGGTAGC
>chr4A_1
AGGTTTGTTTCCCCCTTAAAGCCAATTTGTCGACATGTGGAAGCATCAAACTGTTTGTTCTTCCTGCCTAGCCACATTAT
C-------------------------------------------------------------------------------
--------------------------TAGCTTCTAAGGCATGTCTTGTCGCCTCG-TGTTTTCTGCATCCAGATATCTCA
GAAGACTCTGATCAGGGGGCAGAGCTACAGCTCTGGAAACGCAATCACCTACGCCTTGTTGGACGGCAACAAACAATCTG
CGTTCCTGTCCTCGTTCGACAAGTCCGGATACAAGTCGTCCGATAAGCTCCTGCTCGCGTACAAGCCTCGACGGGGGAGG
TTCGCTGTGTATAAGGGTGAGGTGTCAATGGAAGAAGCTGAAAGGTTTGTGGTTTCCGTCCTGAATGGAGACGTGCAGTT
GTCAGCAACCGGACAGAAGCCAGTTCTTAGGTAGAAGAAGGCTAGGGTTGCAACTCGCAAGCATTGTTTTCTCGAAATGG
TTGCAAGTAATTT-AGTCTTTAGGGGATGTAGTGTGTGTGATCTGGGAGGGCCTGTACATAGTTGAATCAATCAAGA---
--GAGTAAAATGTAAAACTGTCGACTCAGATTTGTGGACTGGGATACGGGAATACATACTGACATGTTACCTTGCATACA
TGTACATATTTCTCTGGCTTTTCTTGTTGAGGGAAATTTCTCTG------------------------------------
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>chr4D_187
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--------------------------TAGCTTCTAACGCATGTCTTATCGTCTTGCTGTTTTCTGCATCCAGATATCTCA
GAAGACTCTGATCAGGGGACAGAGCTACAGCTCTGGGAACGCAATCACGTATGCCTTGTTGGACGGCAACAAACAATCTG
CGTTCCTGTCCTCGTTCGACAAGTCTGGATACAAGTCGTCCGATAAGCTCCTGCTCGCGTACAAGCCTCGACGGGGGAGG
TTCGCTGTGTATAAGGGTGAGGTGTCAATGGAAGAAGCTGAAAGGTTTGTGGTTTCCGTCCTGAATGGAGACGTGCAGTT
GTCGGCAACTGGACAGAAGCCAGTTCTTAGGTAGAAGAAAGATAGGGTTGCAACTCGCAAGCATTGTTTTCTCGAAATGG
TTGCAAGTAATTTTAGCCTTTAGGGGATGTAGT--GTGTGATCTGGGAGGGCCTGTACATAGTTGAATCAATCAAGACAA
GAGAGTAAAATGT-AAACTGTGGACTCAGATTTGTGGACTGGGATACGGGAATACATACTGACATGTTACCATGCATACA
TGTACATATTTCTCTGGCTTTTCTTGTTGAGGGAAATTTCTCTG------------------------------------
---TTTTTTTTTTTTTTGACAATCAATTCTCTGGCTTTGTTTAGTAGAACATCCTGTGGCGATAAGTGTGGACCGCGTGT
TCACTACAGTACTACTACTACAGCGTACCGTTAGCACCAACAAATCGGCCCGGCCCAACAAGCTGCCTGATGTAAAGCAG
TCACCCCACTACGGTACGGGATGGCCTCACAAATTCTATCTCTTCTTCCCTAGAGCACAAAATGCAGTGGCCGAGCAGGT
GAGAAGAAGATGGCTGCCACCAGCCTCAGTTCCTCTCCCTCCAAGGTTGGCACTGCCAAAGTAAGCTCCCCCACCCCTCT
TCATCTTCTTTCTTCCC-----------CTCCTCGAGTTGCTAGGATTCGTGTCGTCGTTTGAAGGAGTATAACGGAAGA
---------------------------TATGCCGGCCATGCCTGTTGTTGTAACGAGTTTAGTGCACGAGGAGATTGAAA
TTCTGCTGCTCAGTTCAGTTCATATCTTGAATGCTAACGCTATCATCCAATCTAGGCATGAATTCATCTTGACAAGTTCC
CAGCTAGTTGTTGGACTATCTAG--------AATCATGGCTAAAATTGTTGGCGAAATGAGATAATTTGCTAACTGAATC
TTCGGTTCTTGCTGCAACCGGATGTGTATGTACGACAGCTAGGAGGCATCTCCAGATCTTCCCCGTCCTACACCCAGCTC
GCCTTCTGCTCCAGGCATGCCTTCCACAAGATAGGAACCGCTGCAGCTCCGCTGAGGCCTCAGAATGAGCTCAAGCACGC
AAGACCCTGCGCGACCACGGACAACGACCGGGCGGCGCCGGCGGAGGCACAGG---AAAGCGCGACCATCAGCGCCGGCG
TGAACCCGGTGGCGTCCGGCAACGGCCAGCAGCCGCAGCCGGGCGAGCCGCCCAAGCGGGTGCCGCTGACGGCGCGGGAG
CGGCTGCGCGCGGCGCGCGTGCTGGGCAAGTACGCGGAGCCGGGGGCCGGGGGGGCGCCGGCGGACAAGAAGGGTTCGTC
GTCG---------AAGCCGGAGTTCGGGAGCCGGGTGCTGGACGCGCTGCGGGAGACGGACGGCGGGAAGAAGGGCGGGC
GGAAGCGGTCGGGGCTGCCGGAGGCGCCGAGCAACCTGCTGGACGACACCAAGCGCGGCATGCCCAAGGACGGGTGGACG
TTCGACTGGCTGGCGGCGCTGCCCGTGGGCACGGACGTGCTCATCGTCGCCGCGTCCTTCGGGATCATCACCACCGTCAT
GTTCGGGACCACCTACCTCGTGTGGAAGCTCGGCGCCATACATTTCAACGAGTACTA------------------GCTTT
CTCTACGTGGTTCTGTAACAATAATGCCGTCTATCGT---ATGATGAGGCAGATTTTGAGCACAGGAA--TACACCGTGA
TT-GTACGAATTAAATCCAACGATTTTAT-----------AGAAAA-GTTTCATAGATATGTTAAGTAAACTGTCTGTGT
GATGTTGAACACCAAAGTGGCTGTAGTTTAGTGGTGAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAG
CAGCCACATCTCACTATTT-------GTGATTTTCTAATTTTTTTCACATATG-------ACGATTAACGGCTCTGATTA
GCT-----CTTATGGAGACACTGACAGCCAGACCCCACACCGTTTGCACGTCGCCCCC-TTCCATCCCCTCTGCCCTCAC
GCCCTCACCCCACTTCCGCCATAGCCGATTAGCCGCCGGCGAGAGGCCCCCGGTTCCTCTCCTCTGGAGTTTCTGCGCGA
ATGGATCCCGGCGAAGGCGGTTCCCCTGCCGCTCCATCGACTTCCATTGCAGCCCCAGGTGATTTTTGCCCC-TTTTCCT
CGTCTAATCGGCCGAACCAGTGCCACCCGTCGGCGCTAAAACCCTAGCGCGCCTCTGTCTCCAACCATTCCGTGCAGGCC
CAGGCGCGGACACGAGGGAGGACGCCGGGAAGCAGGTGGTGGTGATTCTCGTCGGCCCCCCGGGCAGCGGCAAGTCCACG
TTCGCCGAGGCCGTCATGGCTGCT------GCCGCCGGCCGCCCATGGGCCCGCGTCTGCCAGGTGCGCCCCA-------
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>chr4A_858
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-------------------ACAGCGTACCGTTAGCACCAACAAATCGGCCCGGTCCAACAAGCTGTCTGATGTAAGCAGT
CGTCCCCC------TACGGGATGGCCTCACAAATTCTATCTCTTCTGGCCTATAGCACAAAATGCAGTGGCCGAGCGGGT
GAGAAGAAGATGGCTGCCACCAGCCTCAGTTCCTCTCCCTCCAAGGTTGCCACTGCCAAAGTAAGCTCTCCCACCCCTCT
TCATCTTCTTCCTTCCC-----------CTCCTCGAGTTGCTAGGAATCGTGTCGTCGTTTGAAT---TATAACGGAAGA
---------------------------TATGCCGGCCATGCCTTTTGTTGTAACGAGTTTAGTGCACGAGGAGATTGAAA
TTCTGCTGCTCAGTTCAGTTCATATCTTGAATGCTAACGCTATCATCCAATTTAGGCATGAGTT-ATCTTGACAAGTTCC
CAGCTAGTTGTTGGACTATCTAGTTATCTAGAATCACAGCAAAATTTGTTGGCGAAATGAGATAATTTGCTAACTGAATC
TTCGGTTCTTGGCGCAACCGGATGTGTATGCACAACAGCTAGGAGGCATCTCCAGATCTTCCCCGTCCTACACCCAGCTC
GCCTTCTGCTCCAGGCATGCTTTCCACAAGATAGGAACCGCTGCAGCTCCGCAGAGGCCTCAGAATGAGCTCAAGCACGC
AAGACCCTGCGCGACCACGGACAACGATCGGGCGGCGCCGGCGGAGGCACAGGAGGAAAATGCGACCATCAGCGCCGGCG
TGAACCCGGTGGCGTCCGGCAACGGCCAGCAGCCGCAGCCGGGCGAGCCGCCGAAGCGGGTGCCGCTGACGGCGCGGGAG
CGGCTGCGCGCGGCGCGCGTGCTGGGCAAGTACGCGGAGTCGGGGGCCGGGGCGTCGCCGGCGGACAAGAAGGGCTCGTC
GTCGTCGTCGTCCAAGCCGGAGTTCGGGAGCCGGGTGCTGGACGCGCTGCGGGAGACGGACGGCGGCAAGAAGGGCGGGC
GGAAGCGGTCGGGGCTGCCGGAGGCGCCGAGCAACCTGCTGGACGACACCAAGCGCGGCATGCCCAAGGACGGGTGGACG
TTCGACTGGCTGGCGGCGCTGCCCGTGGGCACGGACGTGCTCATCGTCGCAGCGTCCTTCGGGATCATCACCACCGTCAT
GTTCGGGACCACGTACCTCGTCTGGAAGCTCGGCGCCATACATTTCAACGAGTACTA------------------GCTTT
CTCTACGTGGTTCTGTAACAATAATGCCGTCTATGGTATGATGATGAGGCAGATTTTGAGCACAGGAAAATACACCGTGA
TT-GTACGAATTAAAACCAACGATTTTATTGGAGTATTATAGAAAA-GTTCCATAG---TGTTAAGTAACTCGTCTGTGT
CATGTTGAACACCAAAGTGGCTGTAGTTTAGTGGTGAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAG
CAGCCACATCTCACTGTTT-------TTGTTTTTCTATTTTTTTTTTCACAT-------AACGATTAACGGCTCTGATTA
GCT-----CTTATGGAGGCACTGACAGCCAGACCCCACACCGTTTGCACGTCGCCCCCCTTCCATCCCCTCTGCCCTCAC
GCCCTCACCCCACTTCCGCCATAGCCGATTAGCCGCCGGCGAGAGGCCCA-GGTTCCTCTCCTCTGGAGTGTCTGCGCGA
ATGGATCCCGGCGAAGGCGGTTCCCCTGCCGCTCCATCGACTTCCGGAGCAGCCCCAGGTGATTATTGACCTATTTTCCT
CGTCTAATCGGTCGAACCAGTGCCACCCATCGACGCTAAAACCCTAGCGCGCCGCTGTCTCTAACCATT----GCAGGCG
CGGCCGCGGAGATTAAGGAGGACGCTGGAAAGCAGGTGGTGGTGATTCTCATCGGCCCTCCGGGCAGCGGCAAGTCCACG
TTCGCCGAGGCCGTCATGGCCGGTGCGGCCGCCGCCGGCCGCCCATGGGCCCGCGTCTGCCAGGTGCGCCCCACGCGCTC
CATTCTCTCTACGTGCTAATTTGCTGTGCTGC--TGCCATTGCTTTCCGTCTCCGCCCTGAATTTGATGTCTCGAGACAA
GCATTCTGTAACGCCTAATGCGGGCTCATCTGATTCGGCTTTAAAAATGCTTATATTTTGAATAATTTGTTACTGGATCA
CATGTGTGAAAACTGTAGTTTCAGTCTCATGGTA--
>SNPs
-----------------------------S---S---S---------------S--------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
------------------S----------S--------------------------------------------------
----------------------------------------------------SS----------------S---------
-----------------------------------------------------------------------S--------
-------------S------------------------------------------------------------------
---------------------------------------------S----------------------------------
-------------------------------------------S--------------------------S---S-----
---S----S-----------S-S-SS--S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-------S---------------------------------------S---------S---S----------S--SS
S-SSS-S-------------------------------------------------------------------------
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---------------------------S-----------------SS-----------------------S---------
-----------------SSSSSSSSSSS------S--S-------------------------------S-SSSSSSSS-
SSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-------------------------SS---------
---------------------S----------------------------------------------------------
-------------------------------------------------------------------S---S--------
--S-----------------------------------------------------------------------------
--------------------------------------------S--S-----S--------------------------
------------------------------------------------S------------S-S-----------S----
----------------------------------------------S---------------------------------
-----------------------------------------S----S------------------------------S--
S-------------------------------------------------------------------------------
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--------------------------------------------------------SSSSSSSSSSSSSSSSSSS-----
----S-------------S-------------------------------------------------------------
--S---S--------S-----------SS-----------------S-------------------------S-------
-SSSS------S-S----------S-------------------------------------------------------
--------S----------SSSSSSS---S-----S---SS--S---S----SSSSSSS---------------------
---SSSSS-----------S-----------------S---------------S-----SS-----------S-S-S---
------------------------------------------------------S--------S-------------S--
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----------S---------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------S-----S--S--------------------------------------------
---------------S---------SS--SSSSS-------------------S-SSS---------------S------
------S----S-----------------------S------S---S---S---------S-------S---S-------
-SSS-S-------S--------------------SS
>forward_884
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----------------------------------------------------------------GGTGTGGACCGTGTTC
ACTA----------------------------------------------------------------------------
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>reverse_2151
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----------------------------------------------------------------------GTTTGGCTTT
CTCTGCGTGG----------------------------------------------------------------------
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