>input_sequence_62641
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--------------------------------------------------------------ATGGCCGCCTCTATCGCC
GCCGCCGCCGCCGCCGCGTCCGTCTCCCACGTCCTTCCCGCGCCGAAACCCAAGCCCAGAACCCCACCCCGCCTCTCCCT
CCTCCCCCGCAGGCGCTCCCGCGCCGCCGGGGCCATCTCCGCGTCCGCGTCCGCGGCCTCCGACTTCCTCGCCCCGGTCC
CGTCCCTCAAGTCCCGCCTCGCCGCGGGCGACACCCTCTACGGCCTCTTCCTCCTCTCCTTCTCCCCTACGCTCGCCGAG
ATCGCCGCGCTCGCCGGCTACGACTACGTCGTTGTCGACATGGAGCACGGGCCGGGCGGCATCACGGAGGCCCTCACCTG
CCTCCGCGCCCTCGACGCCGCCCGCACCCCCGCCGTCCTCCGCCTCCCGGAGGCCTGCCCCGTCTGGGCGAAGAAGGCGC
TCGACCTTGGTCCCGCGGGCCTCATGCTTCCCGCCGTCGAGTCTCCGGCCGCTGCCGCGGAGGCTGTATCCCACTGCCGC
TACCCGCCCCGCGGCGTCCGTGGCGCTGCCTACCCAATCGTCCGCGCATCCGCCTACGGCCTCGACGACTCCTACCTCTC
CCGCTGCGAGGATGACACCCTCATCATCTGCCAGGTCGAGACCGCCGCCGGCGTTGCGGAGATCGACGCCATCGCCGCCG
TCGAAGGGGTCGACGTCGTCCAGATGGGCCCGCTCGACCTGTCGGCGAGCATGGGCTACCTGTGGGATCCCGGGAACAGG
AAGGTGCGAGCGACCCTGAGGGAGGCTGAGAGGAAGGTGTTGGAGGCCAGGAAGAAGAAGGACGCTGCTCCGAAGACCAA
TGCGGCTTACTTGGGTGGGTTTGCGATGCCCAATGACCCAGCTGAGCAGCTCAAGCATAGGGGATACCATATGGTTGCAG
GTGCAGTGGACATTGGGTTGTTCCGGAAGGCGGCATTGGAGGATGTCAAGCGGTTCAAGGAGGCGTCAATGGAGATTGGT
GAAGCAGAGGGCGAGGAGGAGGATGAGAAGGAAAATGGATACTGGAGTGAATGA--------------------------
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>chr5B_1_TraesCS5B01G316500
AATTTGGTTTGGAACAAAGTGAGGTTTAGAGAAGTAATTGCAATGACATGGCACCATTAGTGAGTGGTTATTGTAGCTTA
ACTATCGGGTGTTACAGTGACCGCGGCAGAGCAC------ATGCAGGGGAAGGGGCCCTTCTCGGCTTGATTCCTTCATG
TTGTGACTCAATTAAAGTGGATGTGAGAGGGGTAGCACACTTAGAAGGGATGGGGTGGCTTCTTATAGCCTGGCGATTCA
GGCCGATAAGCATGGGCACGACAGCCATGGCCACGACCATAAATTGGACACAGGCGAAGTTCAGGACGTCCATGGCGGGC
AGTCTAGGGAGAGGTCTAGGCTGACGCAGTATGTGCCTACTGGCTCGACATTGATGGCGAGCTAGAGCTTGGTTGGGACG
GTACGTCGGCTAGCTTGGTGGGCGGCACTGCCGGTCCGAGAACACATGGGAGAATGGGGGAAAGGACGAGATGACGAAAC
TAACTACTAGCGCACAACTTGTTTGAGGCCACTTGCATGCCGCGGGCGATGC-GGGAGCGTGGGACCCATTCACAGGTCA
AATACCGCTTTGACTATGTCCATTTCAGCGAATCACTTGAGCAAACCCATCGAGGGATTACGTTATGCGACCGTTACTAG
TA---TAGTGTCAAAAAAAATGTCTTATAAGGTCTTATAGTATTACGGGCTGAGGGAGCTATCTCAAAAACAATCAACAA
CTCAAAAAAAGAATAAATGAAGCAGCGACAACGATCAGGTTAGTAGGTTACCAACCATTTTCTTCAGGGGAGCTGTTGGA
CATTTGCTCTAGGTAGATCGCA-CAAGGACCGCCAAAATCCGACGGC-----------GGCGCTTGCGCCGCGGATCCAG
CCGAGCCAGATCCACGCGGCACGTGACAAGTGACACGACGCTCGCTCACTCCACCCACACTCCCCGGCCGCCGCCGCCGG
CCTCGTCAGTCGCAGATCCCCCAACCACCAGCAAAGCCGCCGCTCACCGCCGATCGGCCCACATGGCCGCCTCTATCGCC
GCCGCCGCCGCCGCCGCGTCCGTCTCCCACGTCCTTCCCGCGCCGAAACCCAAGCCCAGAACCCCACCCCGCCTCTCCCT
CCTCCCCCGCAGGCGCTCCCGCGCCGCCGGGGCCATCTCCGCGTCCGCGTCCGCGGCCTCCGACTTCCTCGCCCCGGTCC
CGTCCCTCAAGTCCCGCCTCGCCGCGGGCGACACCCTCTACGGCCTCTTCCTCCTCTCCTTCTCCCCTACGCTCGCCGAG
ATCGCCGCGCTCGCCGGCTACGACTACGTCGTTGTCGACATGGAGCACGGGCCGGGCGGCATCACGGAGGCCCTCACCTG
CCTCCGCGCCCTCGACGCCGCCCGCACCCCCGCCGTCCTCCGCCTCCCGGAGGCCTGCCCCGTCTGGGCGAAGAAGGCGC
TCGACCTTGGTCCCGCGGGCCTCATGCTTCCCGCCGTCGAGTCTCCGGCCGCTGCCGCGGAGGCTGTATCCCACTGCCGC
TACCCGCCCCGCGGCGTCCGTGGCGCTGCCTACCCAATCGTCCGCGCATCCGCCTACGGCCTCGACGACTCCTACCTCTC
CCGCTGCGAGGATGACACCCTCATCATCTGCCAGGTCGAGACCGCCGCCGGCGTTGCGGAGATCGACGCCATCGCCGCCG
TCGAAGGGGTCGACGTCGTCCAGATGGGCCCGCTCGACCTGTCGGCGAGCATGGGCTACCTGTGGGATCCCGGGAACAGG
AAGGTGCGAGCGACCCTGAGGGAGGCTGAGAGGAAGGTGTTGGAGGCCAGGAAGAAGAAGGACGCTGCTCCGAAGACCAA
TGCGGCTTACTTGGGTGGGTTTGCGATGCCCAATGACCCAGCTGAGCAGCTCAAGCATAGGGGATACCATATGGTTGCAG
GTGCAGTGGACATTGGGTTGTTCCGGAAGGCGGCATTGGAGGATGTCAAGCGGTTCAAGGAGGCGTCAATGGAGATTGGT
GAAGCAGAGGGCGAGGAGGAGGATGAGAAGGAAAATGGATACTGGAGTGAATGAGCACTGAGCTTAGCTCACTGGGGAAC
TGGTGATGATTTCGTTTGTTTGTGTTCTGAACTGAAACTTTTAGGGTATCCATTTTCTGGACTTTGGTGTACTCTTGTTT
AGTCGATGATTTGGGTTTTAGGGAGCAAATCTGTTTGGGCACCTTACTGTTCCCATTTGTAGGTGGTAATTGGTGAGTAC
CTAATAAAGAGTTGGATTGTAGTGAAATGCTGCTGTGTCCTTCTGTTCCATTTTATTTGTGGAAAGC------TAGAAAT
TTGTATGAGCCAAACACCAGAAATTACTTCATGACAAGAGAAAAGCAGTGGTAAGTTTTTCCAATAAAAGATTGATGGTG
AATTTGTTTTGTGGGGTCAGGGCAAGCCCATAGCCAGACTCCAGATTGTCCATCTCAACACTTGCTCAACCTCAACCACT
AGTTCAGATATGCTGGGACATCCCATCCAGAACCATTTAGGTCCTTTGGACACTTGCACATCCC-AAAATATCTCCTTCC
AGCAACAGT-TGCAGCCTTAGGATTAGCTAAGCTCCCTTCCGATTCTTCCCCAAGTTTTTGCTGCTCTTTATCTCATGAC
CACGATGATCGCAGCTAGCTCCATAGTGAAAGCCAACCTTCCTTGCTCGTCAAGGATATCCTCCTGCTCAGACTTCTCAT
CTGGTCATTTGTGGCGCCCATTAGAAGCTGCAAAACATTACCGAGCGCATGGTGTGCGCTCGCTGCGGGTAACATGTGCT
GCCACTAAGACTGCGAAATCTCCAGGTACTGTGAATATGCTTGCCTCCTTTGACTTGATATGGAACCGTTTCTTATTCTG
-TTATGCATGATGCTATCTTGGCATGTTTACCCCCCTTATTTTGCAGCTGAAGAGGAATGGAAGATCAAACGGCAATTCC
TATTAGAGAAGCGGGTAATAACCATCATTCTGACCAA----TATTTTTGCATTAAACGTATATGAA-GGTTGCTGCGGAC
TTCTTAACCTTAAGTCTTATGAAGAGAG
>chr5D_1
AATTCGGTTTGGAACAAAGTGAGGTTTAGAGAAGTAATTGCGATGACATGGCACCATTAGTGAGTAGTTATTGTAGCTTA
ACTACCGAGTGTTACAGTGACCGCGGCAGAGCACCGATCGATGCAGGGGAAGGGGGCCTTCTCGGCTTGATTCCTTCATG
TTGTGACTCAATTAAAGTGGAGGTGAGAGGGGTAGCAGGCTTAGAAGGAATGGGGTGGCTTCTTATAGCCTGGCGATTCA
GGCCGATAAGCATGGGCACGACAGCCATGGCCACGGCCATAAATTGGACACGGGCGAAGTTCAGGACGTCCATGGCGAGC
AGTCTAGGG-GAGGTCTAGGCTGACGCAGTATGTGCCTACTGGCTCGACATTGATGGCGAGCCAGAGCTTGGTTGGGGTG
GTACGTCGGCTAGCTTGGTTGGCGGCACTGCCGGTCCGAGAACACATGGGAGAATAGGGGAAAGGACGAGATGACGAAAC
TAACTACTAGCGCGCAACTTGTTCGAGGCCACTTGCAGGCTGCGGGCGATGCGGGGAGCGTGGGACTCATTCGCAGGTCA
AAAACCGCTTTGACTATGTCCATTTCAGCAAACCTCTTGAGCAAACCCATTAAGGGATTACGTTATGTGA---TTATTAG
TA---TAGTGTTAAAAAAC------------GTCTTATATTATGGCACTAAGGG-GTATT--------------------
----------GAATAGATGAAGCAGCAACAACGATCAGGTCAGTAGGTTACCAACCATTTTGCTCAGGGGAGCTGTTGGA
CATTTGCTCTACCTAGATCGCACCAAGTACCGCCAAAATCCGACGGC-----------GGCGCTTGCGCCGCGGATCCAG
CCGAGCCAGATCCACGCGGCACGTGACAAGTGACACGACGCTCGCTCACTCCACCCACGCTCCCCGGCCGCCGCTGCCGG
CCTCGTCAGTCGCAGATCCCCCAACCACCAGCGAAGCCGCCGCTCACCGCCGATCGGCCCACATGGCCGCCTCTATCGCC
GCCGCCGCCGCCGCCGCGTCCATCTCCCACCTCCTCCCCGCGCCGAAACCCAAGCCCAGAACCCCACCCCGCCTCTCCCT
CCTCCCCCGCAGGCGCTCCCGCGCCGCCGGTGCCATCTCCGCGTCGGCGTCCGCGGCCTCCGACTTCCTCGCCCCCGTCC
CGTCCCTCAAGTCCCGCCTCGCCGCGGGCGACACCCTCTATGGCCTCTTCCTCCTCTCCTTCTCCCCCACGCTCGCCGAG
ATCGCCGCGCTCGCCGGCTACGACTACGTGGTCGTCGACATGGAGCACGGGCCGGGCGGCATCACGGAGGCCCTCGCCTG
CCTCCGCGCCCTCGACGCCGCCCGCACCCCCGCCGTCCTCCGCCTCCCGGAGGCCTGCCCCGTCTGGGCGAAGAAGGCGC
TCGACCTCGGCCCCGCGGGCCTCATGCTTCCCGCCGTCGAGTCCCCGGCCGCTGCCGCGGAGGCTGTATCCCACTGCCGC
TACCCGCCCCGCGGCGTCCGTGGCGCTGCCTACCCAATCGTCCGCGCATCCGCCTACGGCCTCGACGACTCCTACCTCTC
CCGCTGCGAGGACGACACCCTCATCATCTGCCAGGTCGAGACCGCCGCCGGCGTTGCGGAGATCGACGCCATCGCCGCCG
TCGAAGGGGTCGACGTCGTCCAGATGGGCCCGCTCGACCTGTCGGCGAGCATGGGGTACCTGTGGGATCCAGGGAACAGG
AAGGTGCGAGCGGCGCTGAGGGAGGCTGAGAGGAAGGTGTTGGAGGCCAGGAAGAAGAAGGACGCTGCTCCGAAAACCAA
TGCGGCTTACTTGGGTGGGTTTGCGATGCCCAATGACCCAGCTGAGCAGCTCAAGCATAGGGGATACCATATGGTTGCAG
GTGCAGTGGACATTGGGTTGTTCCGGAAGGCGGCATTGGAGGATGTCAAGCGGTTCAAGGATGCGTCAATGGAGATTGGT
GAAGCAGAGGGCGAGGAGGAGGATGAGAAGGAAGATGGATACTGGAGTGAATGAGCAC--------------TGGGGAAC
TGGTGATGGCTTCGTTTGTTTGTGTTCTGAATTGAAACTTTTAGGGTCTCCATTTTCTGGACTTTGGTGTACTCTTGTTT
AGTCGATGATTTGGGTTTTAGGGAGCAAATCTGTTTGGGCACCTTACTGTTCCCATTTGTAGGTGGTAATTGGTGAGTAC
CTAATAAAGAGTTGGATTTTAGTGAAATG-TGCTGTGTCCTTCTGTTCCATTTTATTTGTGGAAAGCTACTCGTAGAAAT
TTGTATGAGCCAAACACCAGAAATTACTTCATGGCAAGTGAAAAGCAGTGGTAAGTTTTTCCAAAAAAAGATTGATGGTG
AATTTGTTTTGTGGGGTCAGGGCAAGCCCATAGCCAGACTCCAGATTGTCCATCTCAACACTTGCTCAACCTCAACCACT
AGTTCAGATATGCTGGGACATCCCATCCAGAACCATTTAGGTCCTTTGGACACTTGCACATCCAAAAAATATCTCCTTCC
AGCAACAGGATGCAGCCTTAGGATTAGCTAGGCTCTCTTCTGATTCTCCCCCAAGTTTTGCTGT-TCTTTATCTCATGAC
CACGATGATCGCAGCTAGCTCCATAGTGAAAGCCAACCTTCCTTGCTCGTCAAGGATATCCTCCAGCTCAGACTTCTCAT
CTGGTCATTCTTGGCGCCCATTAGAGGCGGCAAAACATTACCGGGCGCATGGTGTGCGCTCGCTGCGGATAACATGTGCT
GCCACTAAGACTGCAAAATCTCCAGGTACTGTGAATATGCTTGGCTCCTTTTACTTGATATGGAACTGTTCGTTACTCTG
TTTATGCATGATGCTATCTTGGCATGTTTACCCCC-TTTTTTTGCAGCTGAAGAAGAATGGAAGATCAAACGGCAACTCC
TAGTAGAGAAGCGGGTAATAACCTCCATTCTGACTGTTAACTATTTTTGCATTAAACATATATGAA-GGTTGCTGCGAAC
TTCTTAACCTTAAGTCTTATGAAGAG--
>chr5A_536
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--------------------------------------------------------------GGACCCATTTGCAGGTCA
AATACCGCTTTGACTATGTCCATGTGAGCGAATGGCTCGAACAAACTCATCAAAGAATTACATTATATGA---CTACTAC
TCTAGTAGTGTCAAAATAC------------GTCTTATATTATGGAGCGAAGGGAGTATT--------------------
----------GAATAGATCAAGGAGAAACAAGCATCAAT--------TTACCAACCATTTTCTTCAGGGGAGTTGTTGGA
CATTTGCTGTCCGTAGATCGCACCAAGGACCGCCAAAATCCGACGGCTAGCGCCCACCGGCGCGTGCTCCGCGGATCCAG
CCGAGCCAGATCCACGCGGCACGTGACAAGTGACACGACGCTCGCTCACTCCCCCCACACTCCCCGGCCGCCGCCGCCGG
CCTCGTCAGTCGCAGATCCCCCAACCACCAGCGAAGCCGCCGCTCACCGCCGACTGGCCCACATGGCCGCCTCTATCGCC
GCCGCCGC---------GTCCGTCTCCCACCTCCTCCTCGGGCCGAAACCCAAGCCCACAACCCCGCCCCGCCTCTCCCT
CCTCCCCCGCAGGCGCTCCGGAGCCGCCGGGGCCATCTCCGCCTCCGCGTCCGCGGCCTCCGACTTCCTCGCCCCGGTCC
CGTCCCTCAAGTCCCGCCTCGCCGCCGGCGACACCCTCTACGGCCTCTTCCTCCTCTCCTTCTCCCCCACGCTCGCCGAG
ATCGCCGCGCTCGCCGGCTACGACTACGTGGTCGTCGACATGGAGCACGGGCCGGGCGGCATCACGGAGGCCCTCGCCTG
CCTCCGCGCCCTCGACGCCGCCCGCACCCCCGCCGTCCTCCGCCTCCCGGAGGCCTGCCCCGTCTGGGCGAAGAAGGCGC
TCGACCTCGGCCCCGCGGGCCTCATGCTTCCCGCCGTCGAGTCTCCGGCCGCTGCCGCGGAGGCTGTATCCCACTGCCGC
TACCCGCCCCGCGGCGTCCGTGGCGCTGCCTACCCAATCGTCCGCGCATCCGCCTACGGCCTCGACGACTCCTACCTCTC
CCGCTGCGAGGACGACACCCTCATCATCTGCCAGGTCGAGACTGCCGCCGGCGTTGCGGAGATCGACGCCATCGCCGCCG
TCGAAGGGGTCGACGTCGTCCAGATGGGCCCGCTCGACCTGTCGGCGAGCATGGGGTACCTGTGGGATCCCGGGAACAGG
AAGGTGCGAGCGGCGCTGAGGGAGGCTGAGAGGAAGGTGCTGGAGGCCAGGAAGAAGAAGGACGCTGCTCCGGAAACCAA
TGCGGCTTACTTGGGTGGGTTTGCGATGCCCAATGACCCAGCTGAGCAGCTCAAGCACAGGGGATACCATATGGTTGCAG
GTGCAGTGGACATTGGGTTGTTCCGGAAGGCGGCATTGGAGAATGTCAAGCGGTTCAAGGAGGCGTCAATGGAGATTGGT
GAAGCAGAGGGCGAGGAGGAGGATGAGAAGGAAGATGGATACTGGAGTGAATGAGCAC--------------TGGGGAAC
TGGTGATGGCTTCATTTGTTTGTGTTCTGAATTGAAACTTTTAGGGTCTCCATTTTCTGGACTTTGGTGTACTCTTGTTT
AGTCGATGATTCGGGTTTTAGGGAGCAAATCTGTTTGGGCACCTTACTGTTCCCATTTGTAGGTGGTAATTGGCGAGTAC
CTAATAAAGAGTTGGATTTTAGTGAAATGCTGCTGTGTCCGTCTGTTCCATTTTATTTGTGGAAAGCTA------GAAAT
TTGTATGAGCCAAACACCAGAAATTACTTCATGGCAAGTGAAAAGCAGTGGTAAGTTTTTCCAATAAAAGATTGATGGTG
AATTTGTTTTGTGGGGCCAGGGCAAGCCCATAGCCAGACTCCAGATTGTCCATCTCAACACTTGCTCAACCTCAACCACT
AGTTCAGATATGCTGGGACATCCCATCCAGAACCATTTAGGTCCTTTGGACACTTGCACATCCAAAAAATATCTCCTTCC
AGCAACAGGATGCAGCCTTAGGATTAGCTAGGCTCTCTTCTGATTCTCCCCCAAGTTTTGCTGT-TCTTTATCTCATGAC
CACGATGATCGCAGCTAGCTCCATAGTGAAAGCCAACCTTCCTTGCTCGTCAAGGATATCCTCCAGCTCAGACTTCTCAT
CTGGTCATTCTTGGCGCCCATTAGAGGCGGCAAAACATTACCGGGCGCATGGTGTGCGCTCGCTGCGGATAACATGTGCT
GCCACTAAGACTGCGAAATCTCCAGGTACTGTGAATACGCTTGGCTCCTTTTACTTGATATGGAACTGTTCGTTACTCTG
TTTATGCATGATGCTATCTTGGCATGTTAACCCCCTTTTTTTTGCAGCTGAAGAAGAATGGAAGATCAAACGGCAACTCC
TAGTAGAGAAGCGGGTAATAACCTCCATTCTGACTGTTAACTATTTTTGCATTAAACATATATGAAAGGTTGCTGCAAAC
TTCTTAACCTTAAGTCTTATGAAGAG--
>SNPs
----S------------------------------------S-----------------------S--------------
----S--S-----------------------------------------------S------------------------
---------------------S---------------SS---------S-------------------------------
-----------------------------------S---------------S-------------------------S--
---------S----------------------------------------------------S--------------SS-
-------------------S-----------------------------------S------------------------
-------------S---------S-------------S--S-------------------------------S-------
----------------------------------S----------------S---------------S--SSS-------
------------------SSSSSSSSSSSSS--------S---SS--S-SS-S-S-SSS-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----S----------S-------------S---------------------------------------
-----------S--------------------------------------------------------------------
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--------------------------------S-----------------------------------------------
------------------------------S----S--------------------------------------------
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-------------------------------------------------------------------S------------
-----------------------------S--S------------------------------------------S----
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-------S--S---------------------------------------------------------------------
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------------S-------------------------------------------------------------------
-------------------------------------------------------S------------------------
------------S-S-----------------------------------------------------------S-----
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---------------------------------S------------------------SSSSSSSSSSSSSS--------
--------SS---------------------S---------------S--------------------------------
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------------------S-------------------------------------------------------------
---------------------------------S----S-----------------------------------------
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---------------------------------------------------------------S----------------
--------S---------------------S----S----S------S-----------SSSSSS---------------
----------------------------------------------------------------S---------------
---------SS--------------S--S--------------S------------------------S-----------
-------------------------------------------S-------S--------------S---SS---S----
-----------------------------------S--S---------------S---------------------S---
--S--------------------SS---------SSS--------------------S-------------------S--
--------------------------SS
>forward_198
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------------------GGATGTGAGAGGGGTAGCAC------------------------------------------
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>reverse_2065
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----------------------------------------------------------------TAGCTCACTGGGGAAC
TGGT----------------------------------------------------------------------------
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