>input_sequence_62620
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-----------------------------------------------------ATGCCTCCTCACGCAACTTCCTTCGAG
AAGAGCTGCTCCGGCGACCGGCAAAGGCAGGAGGCAGGAGGGCAACTGCTGCGAGGCCCGGGGCAGCGGTCGGCGTCGTT
CCACGGGCGCGGGGCGGAGCAGCGGCACCAGCTGCCAAAGCAGAGGCCCAAGACGCAGCCGGACCTGCTCGCCGGCGTGA
GGGGCAGGAGCTTCCGCGCCGCGGACGGCGGCGAGCCGCTGGCGGAGCTGGCGGTCCGGAGGACGCCGAGCAAGGTGCTG
GTGAACGTGACCGTGCAGAGGAGCCTGTGGCCGCTGCACGTCATGGCGTCGGCGGAGTGGAGCGTGGCGGACCTCGTGGC
CGCCTCCGTGGGGATCTACGTCAAGGAGGGCAGGCGGCCCTTGCTGCCGGCGACCGACCCGTCGACCTTCGGCCTACACT
ACTCCCAGTTCAGCTTGGAAAGTAAGTCTGTTGCACCTGAAGTCCACAGTACCCTCTGTTTTTCATTCCAGACTTGCACC
ACACAACTATCAAAGTGGAAAGCCAGCACAAGCCCAAGTAGTC--AGTATTGGCCAAGCTGGCCATATGCCGGCATGAAC
TTGGTTCGAGAATAGCCGGCGAGATGAATCAGACCATTTGTTTCCTCAGAAAACCCCTGAACTTATTCAACAAGCAATGC
ATGGGCCCATGTGTCAATGGTCTGTTTTCCCTTTCTCTTACTCGTTAGCCCCACTGACAGTATCAAGT---------CAA
CCATTGATCCTTTAG-----------TGAGCATGATCTGCATCGTTCAGTAAGTGAAGGATCATTCACTGATCATGTAAA
TGTTGTGGACTCATTGGTCAGGTTTGGACCCGAGGGAGAAGGTGATGGAGCTAGGGTCCCGGAGCTTCTTCCTGTGCCCC
AGGTCCTCTTCGGCCGCCGTCCAGACCTCCTCGTCCTCCTGCTCCTCCGCCGGAGCAAGCGGTGTCAGGAACGCCGGGGA
GGCGCCTACGTCAGCGGGCGAACCGCCGGCCTGGCTGCGCTACATGCCGTTCTGGCCGACCATGTAG-------------
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>chr2D_1_TraesCS2D01G289800
TCTTGAAGGCGTTGTTGTTGAAGATCCTCGTCGTCAATGTGGTGTCAATGGTTGGTGCGGATATGGTCGCAGTTCTAGTT
TGTCGTTCACTGATCTGATCGCTTTGGGGCTTTTTTATTTCTTTTTTCCTTTTCACACCTATTCATAGCTTTTGGTCTTA
TGACTTTGCTAGTCGTTGGTGTGTTTTAGCGTTTGTGTTGGGTTGGCTGTGTGCATCCTAGTTATGCAGAGGCCGGGTGT
ATGTTCATTATATTGTATCCTCTTGATGCTTCTTTTGAGCCAATAAAATTCACCCTTTGTCGAAAAAAACCTCACCACTC
CAAGTCCC--TGAAGTCCTCTATCCATATGCTCCTCAGTGTAAGCTTGAATCTTGCAAGTTCAAGGGTTCTGTTTCGCAC
TACTTTCCATAACA--TTTTTTTTGAAAGGTTCTTTCGTCTTTTATATATAGTGCATCAACCAAAGCGTGGTGCAAAGTC
AATGCAATAGAAATCAAATGGGCATGACTTTGCAATTACCAAATTTCTTTTGAGTTAGTATGTAAGA------GTGTTTT
GCCCTTAGTGGCGACTTTAATAAATAAATATAAACGTAGTACTTAATTTGTGGAGGAGAGGCAATCGTGCTCCAATAATT
GACAAGCCAATCACCAATGGTTACAATGATTCCATGTGT--ATGTCTGCCGTGCCGTTCTCATCTCACCTT-TCTCCGGT
ACAAGTCACTTCCCAGTTGCTTCTGGCTTTGATTGTGCTTCCCACCTTTGAAAATTCGGTTCTCCTTGCTTTAATTGTGC
CCTGTTTCGCCTTCGTCTCGGCTGGCTCTTATATGGCCATAGGACCAGCTGCAGCTGCATACGGCATGCTCTGTTTCTGC
ATGGACAACCTCGCCGTCCGGCTCCCGTGCACGTTGCCGCCGGCAGCCGTGATCCTTGCGCGCGCCGTCTGATCGCCCGG
GTGTTTGGAGCTGTTTCTGCGGCAGTGCCTGCGGGTCACCGCCAGCAAGGGCGATGCCTCCTCACGCAACTTCCTTCGAG
AAGAGCTGCTCCGGCGACCGGCAAAGGCAGGAGGCAGGAGGGCAACTGCTGCGAGGCCCGGGGCAGCGGTCGGCGTCGTT
CCACGGGCGCGGGGCGGAGCAGCGGCACCAGCTGCCAAAGCAGAGGCCCAAGACGCAGCCGGACCTGCTCGCCGGCGTGA
GGGGCAGGAGCTTCCGCGCCGCGGACGGCGGCGAGCCGCTGGCGGAGCTGGCGGTCCGGAGGACGCCGAGCAAGGTGCTG
GTGAACGTGACCGTGCAGAGGAGCCTGTGGCCGCTGCACGTCATGGCGTCGGCGGAGTGGAGCGTGGCGGACCTCGTGGC
CGCCTCCGTGGGGATCTACGTCAAGGAGGGCAGGCGGCCCTTGCTGCCGGCGACCGACCCGTCGACCTTCGGCCTACACT
ACTCCCAGTTCAGCTTGGAAAGTAAGTCTGTTGCACCTGAAGTCCACAGTACCCTCTGTTTTTCATTCCAGACTTGCACC
ACACAACTATCAAAGTGGAAAGCCAGCACAAGCCCAAGTAGTC--AGTATTGGCCAAGCTGGCCATATGCCGGCATGAAC
TTGGTTCGAGAATAGCCGGCGAGATGAATCAGACCATTTGTTTCCTCAGAAAACCCCTGAACTTATTCAACAAGCAATGC
ATGGGCCCATGTGTCAATGGTCTGTTTTCCCTTTCTCTTACTCGTTAGCCCCACTGACAGTATCAAGT---------CAA
CCATTGATCCTTTAG-----------TGAGCATGATCTGCATCGTTCAGTAAGTGAAGGATCATTCACTGATCATGTAAA
TGTTGTGGACTCATTGGTCAGGTTTGGACCCGAGGGAGAAGGTGATGGAGCTAGGGTCCCGGAGCTTCTTCCTGTGCCCC
AGGTCCTCTTCGGCCGCCGTCCAGACCTCCTCGTCCTCCTGCTCCTCCGCCGGAGCAAGCGGTGTCAGGAACGCCGGGGA
GGCGCCTACGTCAGCGGGCGAACCGCCGGCCTGGCTGCGCTACATGCCGTTCTGGCCGACCATGTAGCGAGCGGGCACAC
--TTCATCATCCATGATGATCAC-----TGCCCACCCTCGGTCCATGTCTCGAATTGGTTTGGCACGCAGAGCTTCAGGG
GATAAGACCGTAGCGTGCTGGTGCCTGATAGTATCTCGTTGTTTAGGCGGAAACGTCATGATCCACTCGGCTCAGCCACG
CCAGATTCAGATAGTAGGAAATATCAGGTGCGTGATTAGGACAGTTCCCGGGACCGTGCCCGGGCAATTAAGATTGT--T
ATAGACTACAGGAAGCATGATGTGTAATTATTGAATTTTGTA---TCTGATTATGGATGC--AAGTAGAGGAGATTGACC
GGCCATGTATGGATGGATCACATATGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCGTCGGCACATTCTTCTGGACCAAAATCGACGAATACTCAAATCTACTTAATCGTCAG
AACACGAGACAGCTAACGAAAGATTAAAAGAACATCTGAAATCATCTCTCGCATTTTGTTGACAAATCTCAGCAGCAACA
CATTAAGGTTCAGGAGTTCGGAATGCCAGACTGGGACTACA
>chr2B_317
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----------------------------------------------------------------------------ACTC
CAAGTCCAATTGAAGTCCTCTATCCATATGTTCCTCGTTGTAAGCTTGAATCTTGCAAGTTCAAGGATTTTGTTCCGCAC
TACTTTTCATAGCAATTTTTTTTAGAAAGGTTCTTCGTTTTTCTATATA--GTGCATCAACCAAAGCGTGGTGCCAATTC
AATGCAATAGAAATTTAATGGGCATGACTTTGCAATTATCAAATTTCTTTCGAGTTA---TATAAGACTAAGTGTATTTT
GCCCTTAGTGGCGACCTTAATAAATAAACATAAACGTAT---TTAATTTGTGGAGGAGAGGCAATCGTGCTCCAATAATT
GACAAGCCAATCACCAATGGTTACAATGTTTCCATGTGTG--TGTCTGCCGTGCCGTTCTCATCTCACCTT-TCTCCGGT
ACAAGTCACTTCCCAGTTGCTTCTGGCTTTGATTGCGCTTCTCACCTTTGAAAATTCGGTTCTCCTTGCTTTAATTGTGC
CCTGCTTCGCCTTCGTCTCGGCTGGCTCTTATATGGCCATAGGACCAGCTGCACCTGCATACTGCATGCTCTGC-TCTGC
ATGGACAGCCTCGCCGCCCGGCTCCCGTGCGCCTTGCCGCCGGCAGCCGTGATCCTTGCGCCCGCCGTCTGATCGCCCGG
GTGTTTGGAGCTGTTTCTGCGGCAGCGCCTGCCGGTCACCGCCAGCAAGGGCGATGCCTCCTCACGCGCCTTCCTTCGAG
AAGAGCTGCTCCGGCGACCGGCAAAGGCAGGAGTCAGGAGGGCAGCTGCTGCGAGGCCCGGGGCAGCGGTCGGCGTCGTT
CCACGGGCGCGGGGCGGAGCAGCGGCACCAGCTGCCAAAGCAGAGGCCCAAGACGCAGCCGGACCTGCTCGCCGGCGTTA
GGGGCAGGAGCTTCCGCGCCGCCGACGGCGGCGAGCCGCTGGCGGAGCTGGCGGTCCGGAGGACGCCGAGCAAGGTGCTG
GTGAACGTGACCGTGCAGAGGAGCCTGTGGCCGCTGAACGTCATGGCGTCGGCGGAGTGGAGCGTGGCGGACCTCGTGGC
CGCCGCCGTGGGGATCTACGTCAAGGAGGGCAGGCGGCCCTTGCTGCCGTCGACCGACCCGGCGACCTTCAGCCTACACT
ACTCCCAGTTCAGCTTGGAAAGTAAGTTAGTTGCATCTGAAGACCACAGTGCCCTTTGTTTTCCATTCCAGAATTGCACC
ACACAACTATCAAAGCGGAAAGTCAACCC---------AAATACTAGCATTAGCCAAGCTGGCGATATGCCGGCATGAAC
TCTGCTTGAGAATAGCCGGCGAGATGAATCAGA---------------------------ACATATTCAGCAAGCAATGC
ATGGGCCCA--------------------------------------------CTGAGAGTGTCAAGTCGGTCGCAACAA
CCATTGATCCTTTAGGCGACAGTTAGTGAGCATCATCTGCATCATTCAGTAAGTGAAGGATCATTCGCTGATCATGTAAA
TGTTGTGGACTCATTGCTTAGGTTTGGACCCGAGGGAGAAGGTGATGGAGCTAGGGTCCCGGAGCTTCTTCCTGTGCCCC
AGGTCCTCTTCGGCCGCCGTCCAGACCTCCTCATCTTCCTGCTCCTCCGCCGGCGCAAGCGGTGTCAGGAACGCCGGGGA
GGCTCCTACGTCAGCAGGCGAACCGCCGGCCTGGCTCCGGTACATGCCGTTCTGGCCGACCATGTAGCGAGCTAG--CAC
--GTCATCATCCATGATGATCAC-----TACCCACCCTCGGTCCATGTCTCGAATTGGTTTGGCACGCAGAGCTTCAGAG
GATAAGACCGTAGCGTGCTGGTGCCTGATAGTATCTCATTGTTTAGGCGGAAGCGTCATGATCCACTCGGCTCGGCCACG
CCAGATTCAGATAGTAGGAAATGTCAGGTGCTTGACTAGGACAGTTCCCGAGACCGTGTCCGGGCAATTAAGATTGT--T
ATAGACTACAGGAAGCATGATGTGTAATTATTGAATTTTGTA---TCTGATTATATTGATGAAAGTAGAGGAGATTGACC
GGCCATGTATGGATAGATCACATATGCA----------------------------------------------------
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>chr2A_317
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----------------------------------------------------------------------------ACTC
CAAGTCCAAGTGAAGTCCTCTATCCATATGCTCCTCGTTGTAAGCTTGAATCTTGCAAGTTCAAGGGTTTTGTTTCGC--
------------------------------------------------------------------------GCAAATTC
AATGCAATAGATATCAAATGGGCATGACTTTGTAATCACCAAATTTATTTTGAGTTA---TGTAAGA------GTATTTT
GCCCTTAGTGGCGACCTTAATAAATAAATATAAACATAGTACTTAATTTGTGGAGGAGAGGCAATCGTGCTCCAATAATT
GACAAGCCAATCACCAATAGTTACAATGATTCCATGTGTATATGTCTGCCGTGCCGTTCTCATCTCACCTTCTCTCCGGT
ACAAGTCACTTCCCAGTTGCTTCTGGCTTTGATCGTGCTTCTCACCTTTGAAAATTCGGTTCTCCTTGCTTTAATTGTGC
CCTGCTTCGCCTTCGTCTCGGCTGGCTCTTATATGGCCATAGGACCAGCTGCACCTGCATACTGCATGCTCTGC-TCTGC
ATGGACAACCTCGCCGTCCGGCTCCCGTGCACCTTGCCGCCGGCAGCCGTGATCCTTGCGCGCGCCGTCTGATCGCCCGG
GTGTCTGGAGCTGTTTCTGCGGCAGCGCCTGCGGGTCACCGCCAGCACGGGCGATGCCTCCTCACGCGCCTTCCTTCGAG
AAGAGCTGCTCCGGCGACCGGCAAAGACAGGAGGCAGGAGGGCAGCTGCTGCGAGGCCCGGGGCAGCGGTGGTCGTCGTT
CCACGGGCGCGGGGCGGAGCAGCGGCACCAGCTGCCAAAGCAGAGGCCCAAGACGCAGCCGGACCTGCTCGCCGGCGTGA
GGGGCAGGAGCTTCCGCGCCGCGGACGGCGGCGAGCCGCTGGCCGAGCTGGCGGTCCGGAGGACGCCGGGCAAGGTGCTG
GTGAACGTGACCGTGCAGAGGAGCCTGTGGCCGCTGCACGTCATGGCGTCGGCGGACTGGAGCGTGGCGGACCTTGTGGC
CGCCGCCGTGGGGATTTACGTGAAGGAGGGCAGGCGGCCCTTGCTGCCGGCGACCGACCCGTCGACCTTCGGCCTACACT
ACTCCCAGTTCAGCTTGGAAAGTAAGTCTGTTGCATCTGAAGCCCACGGTACCATCTGTTTTTCATTCCAGAATTGCACC
GCACAACTATCAAAGTGGAAAGTCAACACAATTACACAAAATACTAGTATTAGCCAAGCTGGCGATATGCCGGCACGAAC
TCTATTTGAGAATAGCCGGCGAGATGAATCAGATCATTTGTTTCCTCACAAAACCCCTGAACATATTCAGCAAGCGATGC
ATGGGCCCA--------------------------------------------CTGAGAGTGTCAAGTCGGTCGCAACAA
CCATTAAT-CTTTAGGCGACAGTTAGTGAGCATCATCTGCATCATTCAGTAAGTGAAGGATCATTCACTGATCATGTAAA
TGTTGTGGACTCATTGGTCAGGTTTGGACCCGAGGGAGAAGGTGATGGAGCTAGGGTCCCGGAGCTTCTTCCTGTGCCCC
AGGTCCTCCTCGGCCGCCGTCCAGACCTCCTCGTCCTCCTGCTCCTCTGCCGGAGCAAGCGGTGTCAGGAACGCCGGGGA
GGCGCCTACGTCGGCAGGCGAACCGCCGGCTTGGCTGCGCTACATGCCGTTCTGGCCGACCATGTAGCGAGCTAG--CAC
ACGTCATCATCCATGATGATCACTGGACTGCCCACCCTCGGTCCATTTCTCGAATTGGTTTGGCACGCAGAGCTTCAGAG
GATAAGACCGTAGCGTGCTGGTGCCTGACAGTATCTCGTTGTTTAGGCGGAAACGTCATGATCCACTCGGCTCGGCCACG
CCAGATTCAGACAGTAGGAAATATCGGATGCGTGATTAGGACAGTTCCCGGGACCGTGCCCGGGCAATTAAGATTGTTAT
ATAGACTACAGGAAGCATGATGTGTAATTATTGAATTTTGTACTATCTGATTGTGGATGC--AAGTAGAGGAGATTGACC
GGCTATGTATGGATGGATCACATATGCA----------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
-------S----------------------------SS-------------------------------S----------
------S----S-----------S-----------SSS-S--S------SS--------------------------S--
---------------------------------------------------------SSS---------------S----
---------------S----------------------------------------------------------------
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-----------------------------------------S--------------------------------------
----S------------------------------------------------S--------S----------SS-----
--------------------------------S-----------------------------------------------
-------------------------S-----------------------------------------SS-----------
--------------------------------------------S-----------------------------------
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----S---------------------------------------------------------------------------
-----------------------------------S------S-----------------------------S-------
----------------------S--S-----SSS--SSS-S-S--------S-----------S----------------
-SS---S--------------------------S--------------S-------------S------S----------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---S------------------
---------------------------------S---------S------------------------------------
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---------------S--------------------------------------------------------SS-SS---
--S---------------------------------------------------------------------------S-
-------------------------------------------------------------------------S------
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----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_58
--------------------------------------GTGGTGTCAATGGTTGGTGC----------------------
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>reverse_1721
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----------------------------------------CTCGTTAGCCCCACTGACAG--------------------
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>forward_236
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--------------------------------------------------------CCTAGTTATGCAGAGGCCGG----
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>reverse_2159
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------------------------------------------------------------------------------GG
GATAAGACCGTAGCGTGC--------------------------------------------------------------
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