>input_sequence_62619
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--------------ATGCCCCCACCAAACCCTCAGCCTGGCCCTTACGACAATCCATTGTATGGTGCCAGCTCGGGTCTG
ATTAAAACTGGGTTAGGAGTATACGGGGAGAAGTTCCTCGGCTCCAGTTCAGAATTCATGCAGAGCAATGTAAGGAGCGT
CCAAAGAACCTTGATCCCCC-GGG-----------------------TGTTTCAAATCGCTCACATATTCTCTCTAAATT
A-TTATTGGCTGTACTCTTGCAGATCAGTAGATACTTCTCCAACCCACAGTACTACTTCCATGTGAATGATCAGTATGTC
AGGAACAAGTTGAAAGTCATACTGTTCCCGTTCCTTCACAGGGTATGTTT----GTCTTTCCCATCTACACTGGATATGT
ATCGGGTTCTT---------------------------------------------------------------------
------CTATCTGGTTTACTGAAATG-AAGTCTTTGCAATGGCATTTCAGGGGCACTGGACTCGGATAAGTGAGCCTGTG
GGTGGCCGGCTGTCGTACAAACCTCCAATGTACGACATAAATGCGCCAGATCTGTACATCCCTTTCATGGCGTTCGGCAC
CTTCATTATTCTAGCAGGCTTCACACTAGGCTTCATGGGGAAGTGAGTTTTCTTCTT----------ACTTT-CTCCAGC
CACGCAAAACAGTGACACTTCAAACCTGGGGTTCCTAATGCACTTGATATCGATATGCAGGTTCACTCCAGAAGCCATAA
ACCTTCAGTTCACAAGAGGGCTGATTGGATGGGGCCTACAGATCGTGTTCCTAAAAGGGCTGCTCTACTCGATGGGCGGA
GGCGAGGTGCCGCTGCTCGACCTGGTGGCCTACAGCGGG-TACCTGTTCGCGGGGCTCTCCCTGGCCATCGTCGCCCGGC
TCCTATGGGCCTACTCATACTATGTGATGATGCCGTGGATGAGCCTGTGCATGGGGATCTTCTTGGTGAGGACGATGAAG
CGGGTCATCTTCACGGAGATGCGGGGCAGCGAGAGGCACTCGACGCGGCAGCACTACTTCCTGCTCTTCATGGCCATCGT
GCAGTTCCCCCTCTTCTTCTGGCTCGGCAGCATAGGCGCATGA-------------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr2D_1_TraesCS2D01G001300
CCTTAACAAGTCAGACTAGAGGATATGCTCCCATGTCGTTTG----------ATGACAGTTACTGACGGTGCTTGCAGAA
TTAGATAGATATTCAG---ACTTGTACCATGTGTATGTATGTATGTATGTACTCC----CTCTGTCCTATAATACAAGAG
CGTTTTTTACACTAGTGTAGTGTCCAAAACGCTCTTATATTATGGGACGGAGGGACTGAGGGAGTATTTAGCAGCAGACG
C----AAAGAAAGAAAACAACATAATGCTAGCTAAGCTAGGTGTAC------TACTCCAACTGACATCTATGAATGATGG
TTCTGAACCTGCATATCCTTTACCAACTCAACTGCTTGCTATTTCCACG----TCTTTACTCATATACATACATACAATC
AATAAGCGGAAAATG---------------------------------GTTAGCTAATCCTCCTCTGCCAGTAGCTTGCT
TCCCTACTCCCAGCGAGTCGTGTCGCTCTTGTACTGGTGGAGTTCTCTTCTTCTTGCCATAGAGGATAAAATCTT-----
-----TCTACCATCACTAAACAAACAATTCAG---GGTGCAAGTTTCTGCAGATATTTCACATTTATCATGGGCAGACTT
CATAAATGATATGAATATATAGCAGTATGA----CAGATATTATACCAGATGTTCTGTACAATTTCTCTGTCATATTTAG
AAATTTTCACTTGTTTACACTACATATGGTAGAACAATTAAGATGCTATATTGATCTCTTGTGTGATGTGTTCTGTTGAA
AA----------------------------------TGCTTAAGTAATCGAAATTACTACCCTGCCTAGAAGTAT-----
-CCAAGATAAACTCTGTTCCCCCTTGTCTCATCATGTACCTGTTGGTTTTGCACGGTTGCACCTTATGTTATGC------
----TTTAATTTAATAATGCTGTGTTGACATTTTACTTCAGTTAATTTTCTACGGCCACCGTGCATATGTCAGTATCCAT
TTATCAATTGGCATTGCATTTAT-TT-TAACTCCGGTACCTT-TTTGCAGCCATGTATGATAACTACAGAAATCCTCATC
CTCCCGGGATGCAGATGCCCCCACCAAACCCTCAGCCTGGCCCTTACGACAATCCATTGTATGGTGCCAGCTCGGGTCTG
ATTAAAACTGGGTTAGGAGTATACGGGGAGAAGTTCCTCGGCTCCAGTTCAGAATTCATGCAGAGCAATGTAAGGAGCGT
CCAAAGAACCTTGATCCCCC-GGG-----------------------TGTTTCAAATCGCTCACATATTCTCTCTAAATT
A-TTATTGGCTGTACTCTTGCAGATCAGTAGATACTTCTCCAACCCACAGTACTACTTCCATGTGAATGATCAGTATGTC
AGGAACAAGTTGAAAGTCATACTGTTCCCGTTCCTTCACAGGGTATGTTT----GTCTTTCCCATCTACACTGGATATGT
ATCGGGTTCTT---------------------------------------------------------------------
------CTATCTGGTTTACTGAAATG-AAGTCTTTGCAATGGCATTTCAGGGGCACTGGACTCGGATAAGTGAGCCTGTG
GGTGGCCGGCTGTCGTACAAACCTCCAATGTACGACATAAATGCGCCAGATCTGTACATCCCTTTCATGGCGTTCGGCAC
CTTCATTATTCTAGCAGGCTTCACACTAGGCTTCATGGGGAAGTGAGTTTTCTTCTT----------ACTTT-CTCCAGC
CACGCAAAACAGTGACACTTCAAACCTGGGGTTCCTAATGCACTTGATATCGATATGCAGGTTCACTCCAGAAGCCATAA
ACCTTCAGTTCACAAGAGGGCTGATTGGATGGGGCCTACAGATCGTGTTCCTAAAAGGGCTGCTCTACTCGATGGGCGGA
GGCGAGGTGCCGCTGCTCGACCTGGTGGCCTACAGCGGG-TACCTGTTCGCGGGGCTCTCCCTGGCCATCGTCGCCCGGC
TCCTATGGGCCTACTCATACTATGTGATGATGCCGTGGATGAGCCTGTGCATGGGGATCTTCTTGGTGAGGACGATGAAG
CGGGTCATCTTCACGGAGATGCGGGGCAGCGAGAGGCACTCGACGCGGCAGCACTACTTCCTGCTCTTCATGGCCATCGT
GCAGTTCCCCCTCTTCTTCTGGCTCGGCAGCATAGGCGCATGAGAT----AGTCTTGTC--------------TGTAATC
TTGGCACTAGAAAAAGAAAAAGCAGCAACCTGTGAAGCTTAGGCGCATTCAGTATAGCACATCCAGTAGCTTGTGCAGGC
TCTCTGAGCATCATCATACATGTTTTGTTGACAGGG--TTTTGTGTTTGGTTTTGTATAAAGTTGTGAATTTTGCAGTTG
GTCACCATTTT-GTAGTATGTTTGTTGGAATAGTCTCAAGTATATTTAT-----TATTTATTATTTATGTTACATATATA
TGTTTCTTTGTATGTG------------------CACTCATCCTACTTAACTGGCATTGTTTGAATGTTCGGTCAGTGAA
AGTATATGGATTTTCGACGATAAAGACAGTCAGCTCCAGTCTGTCATTTGGTAGATGCAGAGTATA--TATATACTGTCA
GAAAATTCACCACAGAAGTATGCATATTATTTCTGTCATTATTCCATTGTATCTG-ATTTTTTGAATCT-AAAAGAGATT
TGGTCTAACAGTTTTTCCCGAAACAAGACAAACAAATACGTATTTTGTTTATAA-CTGATTTTCTCAGGATTTTTGGTCA
AGTATCCAGATTTACGCGTGATAACTATCCATGCAGAAAAAAATGAGACGCTG-GCTATGTATGAAATGCATTAGCAACA
AGTGAACAAAGTGGTTAACAAAAGATTTATGTTGATGGATAAATTCTAAACGACCAAAAACACAGCTTTGGAGGGGACAC
AAAAGCAAAATAGATTCCCAGGTACCAATTCTCAAG-----------------------CATGGATTTCACCGCACGCAG
TTGCGCATTCCAACAGCCATTCGTCATCAAAATGTAGTAGTAGAAACTTGAAAGGGCGCGCCGTTCGTATTAAAC-----
------------------------------AGTGCAAAGGTACAACGACTATGGGTACAAGAGCAAGAAGAAACTTTGGC
ATCTCACAAGCCTGGCAACAAGCAAATACCCTGTCAAACTTAATATATTATTACAACTAGAGACCCCTTTCGTCATTGTC
ACGAATCATACTGGCATGGCCATCTTCTTCT
>chr2A_1
CCTTAACAAGTCAGACTAGAGGATAATGTTCTTGCCCCTCCCTACTTGTTTCATGACACTTACTCACGGTGCTTGCAGAA
TTAGATAGATATTCACAATACTTGTACCATGTGTATGTATGTATGTATGTATGTATGTACTCCGTCTCATAATGTAAGAC
TTTTTTTGACTCTAGTGTAGTGTCAAAAAACGTCTTACATTATGGGACGGAGGGAGT-----AGTATTTAGCAGCAGATG
CAAAGAAAGAAAGAAAACAACATAATGCTAGCTAGGCTAGGCTAGGTGTACTTACTCAAACTCACATCTAGGAATGATGG
TTCTGAGCTTGCATATCCTTTACCAACTCAACTGCTTGCTATTTCCACGTCTTTCTTTACTCATATACATACATACAGTC
AATAACCGGAAAACAGTTAGCTAATCCTCCTCTGTCGCTAAACAAACAGTTAGCTAATCCTCCTCTGTCGCTAAACAAAC
AGTTA--------------------------------------------------GCCATAGAGGATCATAATGGTATAT
CTTTGTGTACTATCGCTAAACAAACAGTTCTTCAAGGTGCAAGTTTCTGCAGATATTTCACATTTATCATGGGCAGACTT
CAT-AATTATATGAATATATAGCAGTATGGGTGGCAGATATTATACCACATGCTCTGTACAATTTCGCTGTCATCTTTAG
AAATTTTCACTTGTTTACACTACATATGGTAGAACAATTGAGATGCTATATTGATCTGTTGTGCGATGTGTTCTGTTGAA
AATTTCTAGGAATTATTTGAATGGCATGACTA---GTGCTTAAGTAATTGAAATTACTACCCTGCCTGGAAGTATCCAAG
ACCAAGATAAACTCTGTTCCCCCTTGTCTTATCATGTACCTGTTGGTTTTGCACGGTTGCACCTTATGTTATGTTATCCT
TTAATTTAATATAATAATGCCGTGTTGACATTTTACTTCAGTTAATTTTCTACGGCCACCGTGCATATGTCAATATCCAT
TTATCAATTCGCATTGGATTTAT-TA-TAACTCTGCTTCCTTCTATGCAGCCATGTATGATAACTACAGAAATCCCCATC
CTCCCGGGATGCAGATGCCCCCACCAAACCCTCAGCCTGGCCCATATGACAATCCATTATATGGCGCAAGCTCAGGCCTG
ATTAAAACTGGGTTAGGAGTATATGGGGAGAAGTTCCTCGGCTCCAGTTCAGAATTCATGCAGAGCAATGTAAGGAGCCT
CCAAAGAACATTGATCTCCC-TGG-----------------------TGTTTCAAATCGCTTATGTATTCTCTCTAAATT
ATTTATTGGCTCTACTCTTGCAGATCAGTAGATACTTCTCCAACCCACAGTACTACTTCCATGTGAATGATCAGTATGTC
AGGAACAAGTTGAAAGTCATACTGTTCCCGTTCCTTCACAGGGTATATTT----GTCTTTCCCATCTACACTGGATATGT
ATCTTGTTCTTCTGTCTATATATCGGGTGTACTGAAATATGTTCCGTCTTTCCTAGCTGCGCTGGATATGTTTCTGGTTC
TTTTATCTATCTGGTGTACTGAAATA-GATTTTTTGCAATGATTTTTCAGGGGCACTGGACCCGGATAAGTGAGCCTGTT
GGTGGCCGGTTGTCATACAAACCTCCAATGTACGACATAAATGCGCCAGATCTGTACATCCCTTTCATGGCGTTTGGTAC
CTTCATTATTCTTGCAGGCTTCACACTGGGCTTCATGGGAAAGTGCGTTTTTTTTTT----------AACTTTCTTCAGC
CA--AAAAACAGTGACACTTCAAAATCACAGTTCCTAATGCACTTGAACCC-GTATGCAGGTTCACTCCAGAAGCCATAA
ACCTTCAGTTCACAAGAGGGCTGATCGGATGGGGCCTACAGATCGTGTTCCTGAAAGGGCTCCTCTACTCGATGGGCGGT
GGCGAGGTGCCGCTGCTCGACCTGGTAGCCTACAGCGGG-TACCTGTTCGCAGGGCTCTCCCTGGCCATCGTCGCTCGGC
TCCTATGGGCCTACTCATACTACGTGATGATGCCGTGGATGAGCCTGTGCATGGGGATTTTTTTGGTGAGGACGATGAAG
CGGGTGATCTTCACGGAGATGCGGGGCAGCGAGAGGCACTCGACGCGGCAGCACTACTTCCTGCTCTTCATGGCCATCGT
GCAGTTCCCCCTCTTCTTCTGGCTCGGCAGCATAGGCGCATGAGAT----AGTCTTCTC--------------TGTAAAT
TTGGCACTAGAAAAAGCAA------CCACCTGTGAAGCTTAG--------------GCACATCCAGTAGCTTGTGCAGGC
TCTCTGAGCATCATCATATATGTTTTGTTGACAGGGGTTTTTGTGTTTGGTTTTGTATAAAGTTGTGAATTTTGCAGTCG
GTCACCATTTT-GTAGTATGTTTGTTGGAATGGTCTCAAGTATATTCATATAC------ATTGTTTATGT----TATATA
TGTTTCTTTGTATGCTGTTGGATCTACCCTAGTTCACTCATCCTACTTAACTGGCATTGTTTGAATGTTCACTCAGTGAA
AGTATATGC---------------------CAGCTTCAGTCTGTCATTTGGTAGGTGCAGAGTATATATATATACTGTCA
GAAAATTCACCACATAAGTATGCATATTATTTCTGTTATT---CCATTGTATCTGGATTTTTTGATTTC-CTCAGAGTTT
TGGTCCAACAGCTTTTCTCAAAACAAGACAAACAAAATTGTATTTTGTTTATAAACTGATTTTCTTTGGATTTTTGGTGA
GGTATCCAGATTTACGCGTGATAACTATCCGTGCAGAAAAAAAATGAGATGCGTGCAATGTATGAAATGAATTAGCAACA
AGTGAACAAGTACTTAACAACGT--------TTAATGGATAAATTCTGAACGACCAAAAACAGAGCTTTGGAGGGAACAC
AAAAGCAAAATAGGTTCCCAG---AATTCATTCTCAAGCACGACAACAAACGCTGTTGTCATGGATTTCACAGCATGCAG
TTGCACATTCCAACAACCATTCGTCAAAAATG---AGTAGTAGAAACTTGAAAGGGCGCGCCGTTCGTATTAAACAGTGC
AAAGGTCCGATGCAAAAAAAAAAAAAAAACAGTGCAAAGGTACGACGACTATGGGTACAAGAGCAAGAAGAAACTTTGGC
ATCTCAGAAGCCTGGCAACAAGCAAATACCCTGTCAAACTTAATATATTATTACAACTAGAGATCCCTTTCGTCATTGTC
ACGAATCATATTGGCATGGCCATCTTCTT--
>chr2B_207
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GTATTTAGCAGCAGACG
C----AAAGAAAGAAAACAACATAATGCTAGCTAGGCTAGGTGTAC------TACTATAACTGGCATCTAGGAATGATGG
TTCTCAGCTTGCATATCCTTTACCAACTCAACTGCTTGCTATTTCCTCG----TCTTTACTCATACACATCAATAA----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------GCAGATATTATACCAGATGTTCTGTACAATTTCTCTGTCATCTTTAG
AAATTTTCACTTGTTTACACTACATATGGTACAACAATTAAGATGCTATGTTGATCTCTTGTGTGATGTGTTCTGTTGAA
AATTTCTAGGAATTATTTGAATGGCATGACTAGTAGTGCTTAAGTAGTCGAAATTACTACCCTGCCTGCAAGTAT-----
-CCAAGATAAACTCTGTTCCCCCTTGTCTCATCATGTACCTGTTGGTTTTGCACGGTTGCACCTTATGTTATGTTATGCT
TTAATTTA--ATAATAATGCTGTCTTGACATTTTACTTCAGTT-------------------------------------
----CAATTGGCATTGCATTTAT-TTTTAACTCTGCTT-CTTCTTTGCAGCCATGTATGATAACTACAGAAATCCTCATC
CTCCCGGGATGCAGATGCCCCCACCAAACCCTCAGCCTGGTCCCTATGACAACCCATTGTATGGCGCAAGCTCGGGTCTG
ATTAAAACTGGGTTAGGAGTATATGGGGAGAAGTTCTTCGGCTCCAGTTCAGAATTCATGCAGAGCAATGTAAGGAGCCT
CCAAAGAACCTTGATCCCCC-TGG-----------------------TGTTTCAAATCATTCACGTACTATCTCTAAATT
ATTTATTGGCTCTACTCTTGCAGATCAGTAGATACTTCTCCAACCCACAGTACTACTTCCATGTGAATGATCAGTATGTC
AGGAACAAGTTGAAAGTCATACTGTTCCCGTTCCTTCACAGGGTATGTTT----GTATTTCCCATCTACACTGGATATGT
ATTGGGTTCGTCTGTCTATA------------------------------------------------------------
-------TATCTGGTGTACTGAAATC-AAATGGTTGCAATGGCATTTCAGGGGCACTGGACTCGGATAAGTGAGCCTGTT
GGTGGCCGTTTGTCATACAAACCTCCAATGTACGACATAAATGCGCCAGATCTGTACATCCCTTTCATGGCGTTCGGTAC
CTTCATTATTCTCGCAGGCTTCACACTAGGCTTCATGGGGAAGTGAGTTTTCTTCTT----------ACCTT-CTCCAGC
CACGCGAAACAGTGACACTTCAAACCTGGGGTTCCTAACGCACTTGATATCGATATGCAGGTTCACTCCAGAAGCCATAA
ACCTTCAGTTCACAAGAGGGCTGATCGGATGGGGCCTACAGATTGTCTTCTTAAAAGGCCTCCTCTACTCGATGGGCGGT
GGCGAGGTGCCGCTGCTCGACCTGGTAGCCTACAGCGGG-TACCTGTTTGCGGGGCTCTCCCTGGCCATCGTCGCCCGGC
TCCTGTGGGCCTACTCATACTACGTGATGATGCCGTGGATGAGCCTGTGCATGGGGATCTTCCTGGTGAGGACGATGAAG
CGGGTCATCTTCACGGAGATGCGGGGCAGCGAGAGGCACTCGACGCGGCAGCACTACTTCCTGCTCTTCATGGCCATCGT
GCAGTTCCCCCTCTTCTTCTGGCTCGGCAGCATAGGCGCATGAGAT----AGTCTTGTC--------------TGTAATC
TTGGCACTAGAA----AAAAAGCAGCCACCTGTGAAGCTTAGGCGCATTCAGTATAGCACATCCAGTAGCTTGTGCAGGC
TCTCTGAGCATCATCACATATGTTTTGTTGACAGGG-TTTTTGTGTTTGGTTTTGTATAAAGTTGTGAATTTTGCAGTTG
GGCACCATC-T-GTAGGATGTTTGTTGGAATAGTCTCAAGTATATTTATATTTATACTTATTGTTTATGT----TATATA
TGTTTCTTTGTATGTTGTTGGATCTACCCTAGTTCACTCATCCTACTTAACTGGCATTGTTTGAATGTTCATTCAGTGAA
AGTATATGGATTTTCGATGATAAAGACAGTCAGCTCG-------------------------------TATATACTGTCA
GAAAATTCACCACAGAAGTATGCATATTATTTCTGTTATTATTACATAGTATCTG-ATTTTTTGAACCTAAAAAGAGATT
TGGCCTAACAGTTTTTCTCAAAACAAGACAAACAAATATGTATTTTGCTTAT-AACTGATTTTCTTTGGATTTTTGGTGA
AGTATCCAGATTTACGCGTGATAACTATCCGTGCAGAAAAAACGAGACA-CTG-GCAATGTATGAAATGCATTAGCAACA
AGTGAACAAGTGCAAAAGCAAAATAGGAAACC------------------------------CAGCTTTGTTGAGAACAC
AAAAGCAAAATAGGTTCCCAGCTGAATTCATTCACAAGCACGGCAACAAACACGGTTATCATGAATTTCACATCATGCAG
TTGCACATTCCAACAGCCATTCGTCATCAAAATGTAGTAGTAGAAACTTGAAAGGGCGCGCCGTTCGTATTAAAC-----
------------------------------AGTGCAAAGGTACGACGACTATGGGTACAAGAGCAATAAGAAACTTTGGC
ATCTCACAAGCCTGGCAACAAGAAAATACCCTGTCAAACTTG--ATATTATTACAACTAGAGACCCCTTTCGTCATTGTC
ACGAATCATATTGGCATGGCCATCTTCTTCT
>chr5A_842
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------------AATAATGTTGTGTTGACATTGTACTTCATTTAATTTTCTACAACCACCATGC--ATGTCAGTATCCAT
TTATCAATTGGCATTGCATTTAT-TT-TAACTCCGCTT-TTTCTTTGCAGCCATGTATGATAACTACAGAAATCCTCATC
CTCCTGGGATGTAGATACCCCCACCAAACCCTCAGCCTGGTCCCTATGACAATCCATTGTATGGTGCTAGCTCTGGCCTG
ATTAAAACTGGGTTAGGAGTATATGGGGAGAAGTTCCCCGGCTCCAGTTCAGAATTCATGCACAGCAATGTAAGGAGCCT
CCAAAGAACCTTGATCCCCCCTTGGTGTTTCAAATCACTCACATATTTGTTTCAAAACGCTCACATATCCTCTCTAAAAT
ATTTATTGGTTGTACTCTTGCAGATCAGTAGATACTTCTCCAACCCATAGTACTACTTCCATGTGAATGATCAGTATGTC
AGGAACAAGTTGAAAGTCATATTGTTTCCGTTCCTTCACACGGTATATCA-----TATTTCCCAGCTGCAATGGATATGT
TTTTGGTTCTTCTATCTATA------------------------------------------------------------
-------TATCTGGTGTACTGAAATG-AAATAGTTGCAATGCCTTTTCAGGGGCACTGGACTCGGATAAGTTAGCTTGTG
GGTGGCCGGCTGTCCTACAAACCTCCGATGTACGACATAAATGCGCCAGATCTGTACATCCCTTTCATGGCGTTTGGTAC
CTTCATTATTATTGCAGGTTTCACACTGGGCTTCATGGGAAAGTGAGTTTT-----------TTTAAACTTT-CTTCAGC
CA--CAAAACAGCGTCACTTCAAAATCACAGTTCCTAATGCACTCGAACCC-ATATGCAGTTTCACTCCAGAAGCCATAA
ACCTTCAGTTCACAAGAGGACTGATCAGATGGGGCCTACAAATC------------------------------------
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-------------------------------
>chr3D_842
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------------AATAATGTTGTGTTGACATTTTACTTCATATAATTTTCTACGACCATCATGC--ATGTCAGTATCCAT
TTATCAATTGGCATTGCATTTAT-TT-TAACTCCGCTT-CTTCTTTGCAGCCATGTATGATAACTACAGAAATCCTCATC
CTCCTGGGATGCAGATACCCCCACCAAACCCTCAGCCTGGTCCCTATGACAATCCATTGTATGGTGCTAGCTTGGGCCTG
ATTAAAACTGGGTTAGGAGTATATGGGGAGAAGTTCCTCGGCTCCAGTTCAGAATTCATGCACAACAATGTAAGGAGCCT
CCAAAGAACCTTGACCCCCCCCTGGTGTTTCAAGTCACTCACATATTTGTTTCATAACGCTCATATATTCTCTCTAAATT
ATTTATTGGTTGTACTCTTGCAGATCAGTAGATACTTCTCCAACCCACAGTACTACTTCCATGTGAATGATCAGTATGTC
AGGAACAAGTTGAAAGTCATAATGTTTCCGTTCCTTCACAGCATATATCT-----TCTTTCCTAGCTGCACTAGATGTGT
--------------------------------------------------------------------------------
--------------TGTACTGAAATG-AAATGGTTGCAATGCCTTTTCAGGGGCACTGGACTCGGATAAGTGAGCCTATG
GGTGGCCGGCTGTCCTACAAACCTCCGATGTACGACATAAATGCGCCAGATCTGTACATCCCTTTCATGGCGTTTGGTAC
CTTCATTATTATTGCAGGCTTCACACTGGGCTTCATGGGAAATGAGTTTTT-----------CTTAAACTTT-ATTCAGC
CA--CAAAACAACGTCACTTC-AAATCATAGTTCCTAATGCACTCGAACCC-ATATGCAGGTTCACTCCAGAAGCCATAA
ACCTTCAGTTCACAAGAGGATTGATCGGATGGGGCCTACAAATCGT----------------------------------
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-------------------------------
>chr2D_875
--------------------------------------------------------------------------------
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---------------------------------------------TTTTCTGTGACCACCATGC--ACGTGAGTATCTTA
TTATCAATTGACACATCAATTATCTT-TACCTCCGCTT-CTTCTTTGCAGCCATGTATGATAACTACAGAAATCCTCATC
CTCCTGGGATGCAGATCCCCCCACCAAATCCACAGCCTGGCCCATACGACAATCCATTGTACGGCGCAAGCTCAGGTCTG
ATTAAGACTGGGTTAGGAGTGTATGGGGAGAAGTTCCTCGGCTCCAGTTCAGAGTTCATGCAGAGCAATGTAAGGAGCCT
CCAAAGAACCTCGACCCCCCAGGG-----------------------TGTTTCGTATCTCTCACAAACTATCTCTAAATT
ATTTATTGGCTGTACTCTTGCAGATCAGTAGATATTTCTCCAATCCACAGTACTACTTCCATGTGAATGATCAGTATGTC
AGGAACAAGTTGAAAGTCATACTGTTCCCGTTCCTTCATAGGGTATGTTTCGTTGTCTCTCCCATCTACGCTGGATATAG
TTCTGGTTCTTCTATCTA--------------------------------------------------------------
---------TCTGGTGTACTAAGGTAAAAATATTTGCATTGCCTTCTCAGGGGCACTGGACTCGGATAAGTGAACCTGTG
GGTGGCCGGTTGTCGTACAAACCTCCAATGTATGATATAAATGCGCCAGATTTGTACATCCCTTTCATGGCGTTTGGTAG
CTTCATTATCCTCGCGGGCTTCACATTAGGCTTCATGGGAAAGTGAGTTTTCCCTTCTTCCTTTTTAACTTT-CATC---
CA--CAAAACAGTGAGACATCAAACCCAGCGTTCCTAAAGCACTAGGTATCC--ATGCAGGTTCACTCCAGAAGCTATCA
ATCTCCAGTTCACAAGAGGACTAATCGGATGGGGCCTATAGATCGTGTTCCTGAAGGGGCTCCTCTACTCAATGGGCGGG
GGCGAGGTGCCGCTGCTTTACCTGGTTGCCTACAGCGGGGTATCTGTTCGCTGGGCTATCCCTGGCCATCGTCGCCCGGC
TCCTATGGTCCTACTCGTACTACGTGATGATGCCGTGGATGAGCATGTGCATGGGGATCTTCCTGGTGAGGACGATGAAG
CGGGTGATCTTCACAGAGATGCGGGGCAGCGAGAGGCACTCGACGCGTCAGCACTACTTCCTGCTCTTCATGGCCATCGT
GCAGTTCCCCCTCTTCTTCTGGCTCGGTAGCATAGGCGCATGAGATGGATAGTCTTCTCTCTGGTGTTCCCCTTGTAATT
TTGCCACCAGAG----GAAAGTT----ACCTGTGAAGCTTAGTTGCGTT--------------CAGTAGCTTGTGCAGGC
TCTCTGAGCA-CATCACATATGTTATATTGACAGGG-TTTTGTGCTTGG---TTTTGTAAATTTGTGAATTTTGCCATTA
GTCACTCTC-TTGTAGGATATTTGTT-GAATAATCGCAAGTATATACA---------TTATTACTTTTGT----TATATA
TATTCAGGAGTGTATGTTTCTTT---------------------------------------------------------
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-------------------------------
>SNPs
-------------------------SSS-S-SSSSS-S-SSS----------------S-----S---------------
---------------S-----------------------------------SSSS-------S---SS-----SS----S
SS-----S--S-------------S----SSS-----S-----------------S-SSSSS------------------
----------------------------------S----------------------S------------S---------
------S-S--------------------------------------------------------------------S--
-----S-------SS----------------------------------------------------S-SS--SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-S-SSSS-----
------S---S---S-----------S---SS------------------------------------------------
---S---S---------------------S--------------------------------------------S-----
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
-------------------------------------------------------------------------S------
----------S---------------------------------------------------------------------
-----------------------------------S-S------------------------------------------
-------------------------------------------S-----------------------S------------
-----------------------S------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S-------------S-S------------------------------------------------
-----------------------------------------------------------------------------S--
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S-----------------------------------S-----------------S
--------------------------S-----------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------S-------------SSSS------
----------------------------------------------------------------------SS--------
-----------------S------------------------------------S-------------------------
------------------------------------S-------------------------------------------
-----------------S-S------------------S--------------------------SS-----------S-
------------------------------S------------SSSSSSS------S-----------------------
---------SSSSS-S-S-----S-SSS-SS--S-------------S---------------------------S----
-------------S-------S-SSSSSSSS---SS-----------------------------------S---S----
----S---------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
----------S--------------------
>forward_481
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------CCTCTGCCAGTAGCTTGCT
T-------------------------------------------------------------------------------
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-------------------------------
>reverse_2103
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----------------------TGTGATGATGCCGTGGATGA--------------------------------------
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-------------------------------
>forward_483
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--------------------------------------------------------------------------------
---------------------------------------------------------------TCTGCCAGTAGCTTGCT
TCC-----------------------------------------------------------------------------
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-------------------------------
>reverse_2347
--------------------------------------------------------------------------------
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--------------------------AACCTGTGAAGCTTAGGCGC----------------------------------
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-------------------------------
