>input_sequence_62614
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--------------ATGGCGCCGGTGAAGGTGTTCGGGCCGGCCATGTTGACCAACGTGGCCCGGGTGCTGGTGTGCCTG
GAGGAGGTCGGCGCCGAGTACGAGGTCGTCGACATCGATTTCAAGGCCATGGAGCACAAGAGCCCTGAGCATCTCGTCAG
AAACGTAAGCTCACCGACCACTCAAATCCTCTGGTTTCTTGTATCAACTTGTTACGGTCCTGTGGAAACTGTCCAGCTAG
CTGCTGATGATTGTAATTCTATGAGTTGAGTAATACAAGTTATTCACCCGCAAAAGAAACTTGTTACGGTTCTGATGCAA
GATGTTTTGGTTTCTTGCAGCCGTTCGGCCAAATCCCTGCCTTCCAGGATGGGGATCTGCTTCTCTTCGGTA---TG---
-ATTAATTTGCCT------TTTTTTAGT---TACTTTGTTCTTGTCATAGTAAATGTTAA-------TCGCTTGGCCTCT
GTTTCTTGGCATCTGAATGGGACCGGCTAGTAAAGCGAATGCTTCCTTTTTGTTCCGGTG--------------------
------------------------GATGGATGCTCGTTGTTCAAATATCCTCTCAAATTCTCAAAAGCATTCTGTTTTTG
TTGTGTTTTCAGAGTCACGCGCAATTGCAAAGTACGTGCTCCGCAAGTACAAGACGAACGGAGTCGACCTGCTGAGGGAA
GGCGACCTGAAGGAGGCGGCAATGGTGGACGTATGGACGGAGGTGGACGCGCACACCTACAACCCGGCCATCTCGCCGAT
CGTGTACGAGTGCCTCATCAACCCGCTCATGCGCGGCCTGCCGACCAACCAGACGGTGGTGGACGAGAGCCTGGAGAAGC
TCAAAAAGGTACTGGAGGTCTACGAGGCACGCCTCTCCCGGCACGAGTACCTGGCCGGGGACTTCGTCAGCTTCGCGGAC
CTCAACCACTTCCCCTACACCTTCTACTTCATGGCCACGCCGCACGCGGCCCTCTTCGACTCGTACCCGCACGTCAAGGC
ATGGTGGGAGAGGCTCATGGCGAGGCCGGCCGTCAAGAAGCTCGCCGCGCAAATGGTTCCCAAGAAGCCGTGA-------
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>chr1B_1_TraesCS1B01G097400
TTGTGAAAGAAAAACCCATCACCTCTATCCATTGAACCTTGTGAGCAATCCGTCGAACGCCTTGCAGTCGTGCCGGGGGC
GCGGCCGGATAGTGCACGCCTTGCTCCCCTCGCAGGCAGCAAAGCAAGGTTTTGGGGGTCGGTGGTGCTGGAGGGCGCCC
TGCGGCAATGAGCGGACGACCGGAACTGGTTGGGGACGACGGGTGACGATGGTGGTCGTAGATTCTCTCCCACCGGCAAC
AAAGAGAATGCCGACCAAATGCTTTTCGGAAAGCCGGTGCGGAGATAGCTATGGCATGGCACGGTGCTGGTTGGGA----
CGGCTCTTGTGGAGGACGACGTGGCTTGGGAGGGTGGTGGCGGTGGCAATGTCGGG----GCGTGGAGGGAGGTAGAAGA
AGAGAAAATGGGGGTTTGTCTCCCCGACGGGCGGGCCAGGGCAGGACAAGGGCACGCGCCGCTCGCGTCCCTGCGTGTCC
ATTCGGCCGCAAGC-TCGGTTCAAACTTGGGCCGGGAAAAGATCGAAAGCGGACAGAAAACGGAAGACGATCCGTTTACG
GCCGCGTGTTGAAAGACATGCTTTGTTCATTTACCCTCAAATGGACACTGGTGGATAGGACGAGGTCGCGTGTTGAAGTT
GGCCTGAAATGAAAAGAAGGCT---GATTTG----GAAGAAGGAATGCCCGGGTAGCTCCGCCCTATA-----AATCTTG
GTCGCTGTTCTAGAAACATCACGGAAAGCTATGGCACCCACCTCGCTGACCTGAGCCGTGATGCACTAATTGACTGCACC
CGTCAGCCCACACCTCACGGTCCCCCT--CTTCACCCTTCTGGAGAGCTCACGTCTAACCATCCCAC--------CAAGG
CACCAACCACCTA-CCGGAAACTTAGATGCCGTATAAAATGGGGAG-GAATTGGCGTCATGCTGCACACCGCTCAAACAC
AGATAG---CACACAAACAC-----------------ACA-CCCGATCTCTCACTCTCTCGCGTGTACTCCGCGAGTAGC
AACCAAGGGAGAAAATGGCGCCGGTGAAGGTGTTCGGGCCGGCCATGTTGACCAACGTGGCCCGGGTGCTGGTGTGCCTG
GAGGAGGTCGGCGCCGAGTACGAGGTCGTCGACATCGATTTCAAGGCCATGGAGCACAAGAGCCCTGAGCATCTCGTCAG
AAACGTAAGCTCACCGACCACTCAAATCCTCTGGTTTCTTGTATCAACTTGTTACGGTCCTGTGGAAACTGTCCAGCTAG
CTGCTGATGATTGTAATTCTATGAGTTGAGTAATACAAGTTATTCACCCGCAAAAGAAACTTGTTACGGTTCTGATGCAA
GATGTTTTGGTTTCTTGCAGCCGTTCGGCCAAATCCCTGCCTTCCAGGATGGGGATCTGCTTCTCTTCGGTA---TG---
-ATTAATTTGCCT------TTTTTTAGT---TACTTTGTTCTTGTCATAGTAAATGTTAA-------TCGCTTGGCCTCT
GTTTCTTGGCATCTGAATGGGACCGGCTAGTAAAGCGAATGCTTCCTTTTTGTTCCGGTG--------------------
------------------------GATGGATGCTCGTTGTTCAAATATCCTCTCAAATTCTCAAAAGCATTCTGTTTTTG
TTGTGTTTTCAGAGTCACGCGCAATTGCAAAGTACGTGCTCCGCAAGTACAAGACGAACGGAGTCGACCTGCTGAGGGAA
GGCGACCTGAAGGAGGCGGCAATGGTGGACGTATGGACGGAGGTGGACGCGCACACCTACAACCCGGCCATCTCGCCGAT
CGTGTACGAGTGCCTCATCAACCCGCTCATGCGCGGCCTGCCGACCAACCAGACGGTGGTGGACGAGAGCCTGGAGAAGC
TCAAAAAGGTACTGGAGGTCTACGAGGCACGCCTCTCCCGGCACGAGTACCTGGCCGGGGACTTCGTCAGCTTCGCGGAC
CTCAACCACTTCCCCTACACCTTCTACTTCATGGCCACGCCGCACGCGGCCCTCTTCGACTCGTACCCGCACGTCAAGGC
ATGGTGGGAGAGGCTCATGGCGAGGCCGGCCGTCAAGAAGCTCGCCGCGCAAATGGTTCCCAAGAAGCCGTGATTTGCTA
GGCGGGATTTCGCATCGTGGGATCAGATTG------CTGATCTGTATGACG-----TTTTCTTGTTGGTGTCGCGAATAA
GGCAAATGAGCTCGTGTGTGTGTGTGTGTGCGGCTGGAATTGCACCAGCGTGCAGTTTTTGTGCTTTG----CGTGTGTG
TGGTCCTGGAAACTCTTGAGATATGTTCAAAAAAAAAAAATTGAGATGGAACAATGTCTTCGTAATGCTTTCAGATTTGT
TGC-----------------------------------------------------------------------------
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---------------------------------------------------------------------------TTGTC
AAGCCTTAAATAAGATGTTTGTGTCATTGTGTGTGTTTCTAGTCGATGATGTTTGCATGGTTTCTAATTCCCGTATTGAA
ATTTATTTCAAAAAAAAATCCCGTATTGAAATATTTTTGCCAGCACTGAATA-TTTGAAAAAGCAAATCAGTTTGTGTTC
-GGCAAAGCACTGAACGAAAAATAAAATTCAC----------------------------TTGATATTGATTAAAACACG
GTTAAACTTGAGGAACTCTCAG----AAAAATCACTTAAGAAGCCTGTAGCTTCCGATGTAAAAATATGGCGGTGTACTT
ACAAATGGTAATTTGGTGTAATCAATCTATCTATCTACTACTACACGAGTTTGATGAATCCAAATGATGCGAGCAATCGT
GGAACATATTTATAAAAACACGAGTTTGAAGAATCCAAATGATCTGAACGATCGCAAACCAATTTATGGCGATTCAAGTC
CTACATTTGACACTGGAGCTCATATTTTTTTTAATTTATTTCAGTCCTTCCCGCAATGTGCATTTAGTGTGAGGAGACAT
TCTTATCAACTAGAAAAAGGTTTATGATGATTTTGCCAATCTAAAGTAATGTGTCGGCTCAGACAATCGAAGATGCTCAT
AGGGGTACACTATGCATGTGTGTGTTCATAGGGTGATGAGTGTTTGTACTGTGTTAAAGAAAACTCCAAAATTACTAGCC
TCATGGACATGCAAAAAATGCCAATGAATACCGAGCTCCAGTGAGCTTTTTTCAAATTCTTTTTTTTTGGAAGG
>chr1D_1
TTGTGAAAGAAAAACTCGTCACCACTATCCATTGTACCTTGTGAGCAATCCGTCGAACGTCTTGCGGTCGTGCTGGAGGC
GCGGCCGGATAGTGCACGTCCTGCTCCCCTCCCAATCAACAAAGCAAGGTTTTGGGGGTCGGTTGTGCTGGATGGCGCCC
TGCGGCAACGAACGGCCAGCCGGAAGAGGTCGGGGACGACGGGCGACGCCGGCGG-CGTAGTTTCTCTCCCACCGACAAC
AAGGAGAACGCCAGCCAACTGCTTTTCGGAACGCCGATACGGAGACAGTAATGGCATGGCGTGGTGCTGGTTGGGA----
CGACCCTTGTGGAAGACGACGCGACCGGGGAGGGTGGTGGCGGCGGCAATGTTAGG----GGGCGGAGGGAGGTAGAGGA
AGAGAAAAGGAGGGCCTGTCTCCCCGACGGGTGGGCCAGGGCAGGACAAGGGCACGCGCCGCTCGCATCCGCGTGTGTCC
GTTCGGCCGTAAAAATCGACCCAAAGTTGGGCCAGGAATGGGTCGAAAGCGGACAGAAAACGGACGACGGTTCGTTTGCG
GCCGCGCATTGGAAG-----------------------------------------------------------------
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>chr1D_1
TTGTGAAAGAAAAACTCATCACCGATATCCATTGTACCTTGTGAGCAAACAGTCGAACGCCTTGCGGTCGTGCTGGAGGC
GCGACCGGATAGTGCACGTCCTGCTCCCCTCACAGACAGCAAAGCAAGGTTTTGGGGGTCGGTGGTGCTGGAGGGCGCCC
TGCGGCAAGGAACGACCTACAGAAAGAGGTTGAGGACGACGGGCGACGCCGACGACCGTAGTTTCTCTCCCACCACCAAC
AAGGAGAACGCCGACAAAATGCTTTTCGGAACGCCGGTGCGGAGACAACTATGGCATGGCGTGGTGGTGGTTGGAA----
CGACCCTTGCGGAAGACGACGCGGCCAGGGAAGGTGGTGGCGGCGGCAATGTCGGG----GGGCGGAGGAAGGCAAAGGA
AGAGAAAGGGGGGGTCTGTGTCCCCGAAAGGCGGGCCAGCGCAGGACAAGGACACACGCCGCTCACGTCCGCACGTGTCC
GTTCAACCGCAAAC-TCGGCCCAAAGTTGGGCCGGAAATGGATCGAAAGCGGACAGAAAACAGACGACGGTCCGTTTGTG
GCCGTGTGTTGGAGAGCCTACTTTGTCCGTTTATCCCCAAAT--------------------------------------
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>chr7D_1
TTGTGAAAGAAACACTCATCACCACTATCCATTGTACCTTGCGAGAAATCCGTCGAATGCCTTGCGGTCGTGCTGGGAAA
GCGGCCGGATAGTGCACGCCCTGCTCCCCTCGCAGGCAGCAAAGCAAGGTTTTGGGG-TCGGTGGTGCTGGAGGGCGCCT
TGCGTCACCGAACGGCCGGCCGGAAGAGGTTGGGGACGACGGGCGACACCGACGGCCGTAGATTGTCTCCCACCGGCAAC
AAGAAGAACGCCGACCAAATGCTTTCCGGAAGGCCGGTGAGGAGACAACTATGGCATGGCACGGTGGTGGTTGGGA----
TTGCCCTGGTGGAAGACGGCCCGATCCGGGATGGTGGTGGCGGCGGCATTGTCGGG----GCACGGAGGAAGGGAGAAGA
AGAGAAAGGGGGCGTCTGTCTCCCCGACAGGCGGGCCAGGGCAGGACAAAGGAACGCGCCGCTCGCATCCGCGCGTTTCC
TTTTGGCCGCAAAC-TCGGCCCAAACTTGCGCCGGGAATGGGTCGAAAGCGGACAGAAAACGGCCGACGGTCTGTTTGCG
GCCGCGTGTTGGGAGGCCTGCTTTGTCCGTTTACCCCCAAATGGACGCTGGCGGACAGAATGGGGTCGCGTGTTGGAGTT
GGCCT---------------------------------------------------------------------------
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>chr7D_1
TTGTGAAAGAAAAACTCATCACCACTATCCATTGTACCTTCTGAGCAATTCGTCGAACGCCTTGCGGTCGTGCTGGGAAA
GCGGCCAGATAGTGCACGCCATGCTCCCCTCGCAGGCAGCAAAGCAAGGTTTTGGGG-TCGGTGGTGCTGGAGGGCGCCC
TGCCTCACCGAACAGCCGGCCAGAAGAGGTTGGGGACGACGGGCGACACCCACGGCCGTAGATTGTCTTCCATCGGCAAC
AAGGAGAACGCCGGTCAAATGCTTTCTGGAAGGCCGGTGCGGAGACAGCTATGGCATGGCGCAATGGTGGTTGGGA----
CGGCCCTGGTGGAAGACGACGTGACCGGGGATGGTGGTGGCGGCGGCAATGTTGGT----GCATGGAGGGAGGTAGAAGA
AGAG-AAAGGGGGGTCTGTCTCCCCGATGGGCGGGCCAGGGCAGGACAAGGGCACGCGCCGCTTGCGTCCGTGTGTGTCC
GTTCGTCCGCAAAC-TCGGTCCAAACTTAAGCCGTGAATGGGTC-AAAGCGGACAAAAAACGGATGACGATCCGTTTGTG
GCCGCGTGTTGGGAGGCCTGCTTTGTCCGTTTACCCCCTAATAAACACGGGCGGACAGAATGAGGTCGCGCGTT------
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>chr5D_1
TTGTGAAAGAAAAACTCATCACCACTATCCATTGTACGTTGTGAGCAATCCGTCGAACGCCTTGCGGTCGTGCTGGAGGC
GC-GCCGGATAGTGCACGTCCTGCTCCCCTCGCAGGCAGCAAAGCAAGGTTTTGGGGGTCGGTGGTGCTGGAGGCCGCCT
TGCGGCA---AACGACCGACCGAAAGAGGTTGGGGACGACGGGCGACGCCGGCGGCCATAGTTTCTCTCCCACCGGCAAC
AAGGGGAACGCCGGCCAAATGCTTTCTAGAAAGCCGGTGCGGAGACAGCTATCGCATGGCGTGGTGCTGGTTGGGAGGGA
CGGCCCTTGTGGAAGACGACGCGGCCGGGAAGGGTGGTGGCGGCGGCAATGTCGGG----GCGCGGAGGTAGGTAGACGA
AGATAAAAGGAGGGTTTATCTCCCCGATGGGCGGGCCAGGGCAGGACAAGGGCATGTGCCGCTCGCGTCCGCGTGTTCTC
GTTCGTCCGCAAAC-TCAGCCCAAAGTTGGGTCGGGAATGGGTTGAAAGCGAACCGAAAACGGACGATGGTCCATTTGCG
GCCGTGCATTGGAAGGCCTGCTTTGTCCATTTATTCCTAAATGGAC----------------------------------
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>chr5D_1
TTGTGAAAGTAAAACTCATCAGCACTATCCATTGTACCTTGTGAGTAGTCTGTCAAACGCCTTGCGGTCGTGCTGGGGAA
GCGGTCGGATTGTGCACGC------CCCCTCGCAGGCAGCAAAGCAAGGTTTTTGGG-TCGGTGGTGCTGGAGGGCGCCC
AGCGTCACCGAACGGCCGACCGGAAGAGGTCTGGGACGAGGGTGC-CCCCCGCGGCCGTAGGTTGTCTCCCACAGACAAC
AAGAATAACGCCGACCAAATGCTTTCCGGAAGGCTGGTGCGGAGACAGCTATGGCATGGCGCGGTGCTGGTTGGGA----
CTGCCCTTGTGGAAGACAATGTGGGCGGGGATGATTGTGGCGGCGACAATGTCGGG----GCGCGAAAAGAGGTAGAAGA
AGAG-AAAAGGGGGTCTGTCTCCTCGACGGGTGGGCCAGAGCAGGACAAGGGCACGCGCCGCTCACGTCCACGTGTGTCC
GTTCGGCCGCAAAC-TCGGCCCAAACTTGGATCGGGAATGGGTCGAAAGCGGACAGAAAATGGATGATGGTC-GTTTGCG
GCCGCGCGTTGGAAGGCCTGCTTTTTCCGTTTACCCCCAAGCGGACACGGGCGGACAGGATGGGTTCGCGCGTGGGAGTT
GGCCTGAA------------------------------------------------------------------------
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>chr3B_1
TTGTGAAAGAAAAACTCATCACTATTAACCATTGTATCTTGTGAGCAATCCAGCGAACGCCTTGCGGTCGTGCTGGAGGC
GCGGCTAGATAGTGCATGTCCTGCTT-CCTAGCAGGCAGGAAAGCAAGGTTTTGGGTGTCAATGGTGCTGGAGGGCGCCC
CGCGGCAACGAACGGCCGGCCTAAGGAGGTTCGGGACGACGGGCGATGCCGGCAG-CGTAGTATCTCTCCCACCGGCACT
AAGGAGAACGCCGGCCAAATGCTTTCCAGAACGCCGGTGCGGAGAAAGTTATGGCATGGCGTGGTGCTGGTTGGGA----
CGACCCTTGTGGAAGACGATGCGGCCGGGGAGGGTGGTGGCGGTGGCAATGTCGGGAGGGGGGCGAAGGGAGGAAGAGGA
AGAGAAAAGGGGGTA-TGTCTCCCCGATGGGCGGGCCAAGGCAGGACAAGGGCACGCGCCGATCGCATCTGCGCGTGTCC
GTTCGGCTGCAAAC-TCGATCCAAAGTTGGGTTGGGAATGGGTCGAAAGCGGATAGAAAACGAACGGCGGTCCATTTGCG
GCCGCGCGTTGGAAGGCCTGCTTTGTCCATTTACCCCCAAACGGACACGGGCGGA-------------------------
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>chr5A_3
--GTGAAAGAAAAACTCATCACCACTATCCATTGTACCTTGTGAGCAATCCGTCGAACGTCTTGTGGTCATGCTGGGAAA
GCGACTGGATAGTGCACGCCCTGCTCCCCTCGCAGGCAGCAAAGCAAGGTTTTGGGG-TTGATGGTGGTGGAGGGCGCCC
CGCGTCACCGAACGGCCGGCCGGAAGAGGTTGGGGACAACGGGCGACACCGACGTCCGTAGTTTGTCTCCCATCGGCAAC
AAGGAGAACGCCGGCCAAATGCTTTCCGCTAGACCGATGCGAAGACAGCTATGGCATGGTGCAGTGGTGGTTGGGA----
TGGCCCTGGTGGAAGACGACGCGGCCGGGGGTGGTGGTGGCGGCTGCGATGGCG---GGGGCGCGGAGGGAGGTAGAGGA
AGAGAAAGGGGG--TCTATCTCCCTAACGGGCGGGCCAGGGCAGGACAAGGGCACGCGCCGCTCGCGTCCGCGCGTATCT
GTTCGGCCGCAAAC-TCAGCCCAAACTTGGGCCGGGAATGGATCGAAAGCGGACAGAAAACGGACGACAGTCCGTTTGCG
GCCGTGCGTTGGGAGGCCTGCTTTGTCCGTTTACCCC-AAACAGACGCGGAGGGACAGGATGGGATCGTGCGTTGGAGTT
GGCCT---------------------------------------------------------------------------
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>chr3D_46
---------------------------------------------CAATCCGTCGAACGCCTTGCGGCCGTGCTGGGGAA
GCGGCCGGATAGTGCACGCCCTGCTCCCCTCGCAGGCAGCAAAACAAGGTTTTGGGG-TCGGTGGTGCTGGAGGGCGCCC
TGCGTCAACGAACGACCGACCGGAAGAGGTTGGGGACGACGTGCGACGCCGACGGCCGTAGATTATCTCCCACCGGCAAC
AAGGAGAACGCCGGCGAAATGCTTTCCGGAAAGCCGGTGCGGAGATAGCTATGGCATGGCGCGGTGCTGGTTGGGA----
CAACCCTTGTGGAAGACGACGCAGCCGGGAAGGGTGGTGGCGGCAGCAATGTC----GGGGCGCGGAGGGAGGTAGAAGA
AGAGTAAAGGGGGGTTTGTGTCCCCGACGGGCGGGCCAGGGCAGGACAAGGGCGCGCGCCGCTCGTGTCCGCGCGTGTCT
GTTCGGCCGCAAAC-TCGGCCCAAACTTGAGTCGGGAATGGGTCGAAAGCAGACAGAAAATGGATGACGGTCCGTTTGTA
GCCGCGCGTTGGAAGGCCTGCTTTGTTTGTTTACCAA-AAATGGACACGGGCGGACATGACAAGGTCGCGTGTTGGAGTT
GGCCT---------------------------------------------------------------------------
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>chr1B_637
GAAGAT--------------------------------------------------------------------------
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----------GAAAAGAATGCT---GATCTGGACTGAAGAAGGAATGCCCGGGTAGCTCCGCCCGATA-----AATCGTG
GTCGCTGTTCTAGAAACATCACGGATAGCAATGGCACCCACCTCGCTAACA---------------TAATTGACTGCACC
CGTCACCCCACACCTCACGGTCCCCTGCTCTTTCACCCTTTGGAGAGCTCACGTCCAACCATCCCAC--------CAAGG
CACCAACCACCTA-CCGGAAACTTAGATGCCGTATAAAATGGGGAG-GAGTTGGCGTCATGCTGCAGACCGCTCAAACAC
AGATAG---CGCACAAACAC-----------------ACA-CCCGATCTCTCACTCTCTCGCGTGTA-----------GC
AACCAAGGGAGCAAATGGCGCCGGTGAAGGTGTTCGGGCCGGCGATGTCGACGAACGTGGCCCGGGTGCTGGTGTGCCTG
GAGGAGGTCGGCGCCGAGTACGAGGTGGTCGACATCGATTTCAAGGCCATGGAGCACAAGAGCCCCGAGCATCTCGTCAG
AAACGTAAGCTACCCGACCTCTCAAATCCTCTGGTTTCTCGAATCAACTTGTTTT-------------------------
-------------------------------------------------------------------GGGTCTGATGCAA
GATGTTTTGTTTTCTTGCAGCCCTTCGGCCAAATCCCTGCCTTCCAGGATGGGGATCTGCTTCTCTTCGGTA---TG---
---------GCCTTGGCTCTTTTC-AGT---TACTTTGTCCTTGTTAAAATACTCCCTCCGTCCG---------------
-------------------------------AAAATGAATGCTTC-TTTTTAAGGAAAGTAG-----AGTATTGAAGTGA
ATGATAGCCTTCAAATTTGTTTCCGATGGACGCTCGGTGTCCAAATATCTTATCAGATTCTCAAAAACATTTA-GTTTTC
TTGTGTTTTCAGAGTCACGCGCAATTGCAAAGTACGTGCTCCGCAAGTACAAGAAGAACGAAGTGGACCTGCTGAGGGAA
GGCAACCTGAAGGAAGCGGCAATGGTGGACGTATGGACGGAGGTGGACGCGCACACCTACAACCCGGCCATCTCGCCGAT
CGTGTACGAGTGCCTCATCAACCCGCTCATGCGCGGCCTGCCGACCAACCAGACGGTGGTGGACGAGAGCCTGGAGAAGC
TCAAGAAGGTGCTGGATGTCTACGAGGTGCGGCTGTCCAAGCACGAGTACCTCGCTGGGGACTTCTTCAGCTTCGCGGAC
CTCAACCACTTCCCCTATACCTTCTACTTCATGGCCACGCCGCACGCGGCCCTCTTCGACTCGTACCCGCACGTCAAGGC
CTGGTGGGAGAGGATCATGGCGAGGCCCGCCGTCAAGAAGCTCGCCGCACAAATGGTTCCCAAGAAGCCGTGATTTGCAA
GGCGGGATTTCGCATCGTGGGATGAGATCT------CTGATCTGTGTGGCG-----TTTTCTTGTTGGTGTCGCGAATAA
GGCAAATGAGCTCG------TGTGTGTGTGTGGCTGGAATTGCACCAGCGTGCAGTTTCTGGGCTTTG----CGTGTGTG
TGGTTGTGGAAACTC-------------------------TTGAGATGGAACAATGTCTTCATAATGCTTCCATATTTGT
TGCCAAGTTATTTTTGTAGGGATGAACAAAAATTCTGTTTGCCATGATTTTGTAGGGATAATCTTCCTAACTATATGATT
TTGTACGGATGAACTTTCTTTTGCCATGTTATTTTGAGAAGACATGATTACTTTGATTAGTATGCTTGAAGTGTTACTAT
TTTTTTCATCAATATAAACTTTTATTTTGAATCATTTGGATCTGAACATTCATGCCGCAATAAAGAAAATTACTTTGAGA
ATCATGCTAGGTAGCATTTCACATCAAAAATTCTGTTTTTATCATTTACCTACTCGAGGACGAGCAGGAATTAAGCTTGG
GGATGCTTGATACGTCTCCAACGTATCTATAATTTTTTATTGTTTCATGCTATTATATTACCTGTTTTGAATGATTATGG
ACTTTATTATACACTTTTATATTACTTTTGGGACTAATCTATTAACCGGAGGCCCAGCCCATATTGCTGTTTTATTGCCT
GTTTTAGTATTTCGAAGAAAAAGAATATCAAACGGAGTCCAAACGGAATGAAACCTTCGGCAACGTGTTTTTTTTGAAAG
ATTATCATCCTGAAGGCTTGGAGATCAAGTCGAAAGATCCTCGAGGAGCCCAGGAGATAGGGGGTGCCCCCCCTACAGGG
CGCGACCCCCTATCTCGTGGACCCCTCGAGCACCCCCCGACCGACTTCCTTCGCCTATATAACCCTACGTACCCTAAAAC
TATCATATATCAAGATAGATCGGTAGTTCTGCCATCGCAAGCCTCTATAGTCACCAAAAACCTCTCGGGAGTCCGTTCCG
GCACCCTGCCGGAGGGGGAATCCATCATCGGTGGCCATCTTCATCATCCCGGCGCTATCCATGACGAGGAGGAAGTAGTC
CACCCACGGCTGGCAAGCTTTAAATAAGATGTTTGTATGTGTTTCTAGTTGATGATGTTTGCATGGTTTCTAATCCCCGT
ATTGAATTTTTTTTGCCAGCACTGAATATTTTGAAAAAGCAAATCCGTTTGTGTTCAGCAAAGCACTGAACGAAAAATAA
AGTTCACGGTTAAACTTGAGGAACTTTTAAAAGAATCACTTAAGAAGCTGGTAGCTTCCGATGTAAAAATATGGAGGTGT
ACTTACAAAGGGTAATTTGGTGTAATCAATCAAATATATCCACTACTGCTTATAAAAGCACGAGTTTGATGAATGCAAAT
GATTCAAGCAAGTGTGAACCAATATGTGGTTGGATAGTTAGGAGAACGGTGGTATCTCAAGCCAGTTTTGAGTCCTAAAT
TTGACACTGCTGCTCGGCAGATGGCTCGTCGGGGCCTTCGGCTTTAGATATTAGGCTTAGGTGAGAGGTATGGGTATGTG
GCCCAGCTTGCATCCCTTCATCATTTGGATAGCAGTAGCGGCAGATGCTGCTAAGTTGGCGGATTCAGGCATATTATTGT
TATACTTTGTAAGGTCCTCGAGAATAATCAATAAAATGGCCGTATGCATCTCCCAGATGCAGAGGCCGGGGTTCATCCTC
TTTTTTGAAGAAAAAATATGTTTTTTTAATTTATTTCAGGCCTTTCTGTGATATGCGTTTAGTGTGAGGAGACGTTTCCA
TCGACAAAGAATGTGTTTGTGACGACTTTGTCACTATCAAGATAATGTGTCATCTCAGACAATCAAAGATGCTCATATGG
CTAGAGTGTGTGTTCATGTGGCGATGAGCGTTTACGTCTGTACAGTGTTAAAGAAAACTCCAAGATAACATTGTTAAAAA
AAAGTTCCAAGATTACTAGCCTCCTGGCCATGTTGCTTCACGCCTCGAGTTTATTCAAATTATAGTTCTCTGGGCCTTGC
ATTTATTCCTTTTATTTTTGTGACCCTCTCCATATTTAACTTGATTTACGATATTTTCTTAGAATTTTCCTGATAGTTTA
TATGTATTTTTTGATTTTTTAATAATTTCCAAATATACATCAAAGCCTGTCTTGTGACGTGTCATTGCTTTTTTTTAAGG
TAATGGCATGCCATTGCTAAGCTCCTAATTGGCGTCTTATACATCAAAGCCCTTATAATGATTCAGATTTGTTGCTTGGC
AAGCCTTAAATAAGATGTTTGTGTGTC--------TTTCTAGTCGAAGATGTTTGCATGGTTTATAATTCCCGTATTGGA
TTTT-----------------------------TTTTTGCCACCACTGAATATTTTGAAAAAGCAAATCAGTTTGTGTTC
-GGCAAAGCACTGAACGAAAAATAAAATTCAC----------------------------TTGATAGTGATTAAAACACG
GCTAAACTTGAGGAACTT-------AAAAAAACACTTAAGAAGCATGTAGCTTCCGATGTAAAAATATGGCGGTGTACTT
ACAACGGGTAATTTCGTGTGATCCGTCAATATGTCTTATAC---------------------------------------
------TATTTATAAAAGCACAAGTTTGATGAATTCAAATGATTTGAGCAATCG--------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------
>chr1D_637
GAAGAT--------------------------------------------------------------------------
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----------GAAAAGAATGCT---GATCTGGACTAAAGAAGGAATGCCCGGGTAGCTCCGCAGGAAAACTTTAATCGTG
GCCGTTGTTCTAGAAACATCACGGAAAGCAATGGCACCCACTTCGCTGACGCGAGCCGTGATGCACTAATTGACTGCACC
CGTCACCCCACACCTCACGGTCTCCC---CTTCAACCTTCTGGAGAGCTCACGTCCAACCATCCCAC--------CAAGG
CACCAACCACCTACCCGGAAACTTTGATGCCGTATAAAATGGGGAG-GAGTTTGCGTCATGCTACACACCGCTCAAACAA
ACACAGTCACACACAGACAC-----------------ACACCCCGATCCCTCACTCCCTCGCGTGTAC--------TAGC
AACCAAGGGAAACAATGGCGCCGGTGAAGGTGTTCGGGCCGGCGATGTCGACCAACGTGGCCCGGGTGCTGGTGTGCCTG
GAGGAGGTCGGCGCCGAGTACGAGGTGGTCGACATCGATTTCAAGGCCATGGAGCACAAGAGCCCCGAGCATCTCGTCAG
AAACGTAAGCTTCCCGACCACTCAAATCCTCTGGCTTCTCGTATCAACTTGTGTTTG-----------------------
-------------------------------------------------------------------GGTTCTGATGTAA
CATGTTTTGGTTTCTTGCAGCCGTTCGGCCAAATCCCTGCCTTCCAGGATGGGGATCTGCTTCTCTTCGGTACTATG---
-ATTAATCTGCCT------TTTTC-AGTTACTACTTTGTCCTTGTCAAAATAAATGTGAA-------CTGCTTGGCCTCT
GTTTCTCGGCATCTTAATGGGGCCAACTAGTAAAGCGAATCCTTCCTTTCTGTTCTGGTG--------------------
------------------------GGTGGATGCTCCGTCTCCAAACATCCTCTCAAATTCTCAAAAACATTGTGTTCTTG
CTCCGTTTTCAGAGTCACGCGCAATTGCGAGGTACGTGCTCCGCAAGTACAAGAAGAACGAAGTGGACCTGCTGAGGGAA
GGCGACCTCAAGGAGGCGGCGATGGTGGACGTATGGACGGAGGTGGACGCGCACACCTACAACCCGGCCATCTCGCCGAT
CGTGTACGAGTGCCTCATCAACCCGCTCATGCGCGGCCTGCCGACCAACCAAACGGTGGTGGACGAGAGCCTGGAGAAGC
TCAAGAAGGTGCTGGAGGTCTACGAGGCGCGCCTGTCCAAGCACGACTACCTCGCCGGGGACTTCGTCAGCTTCGCGGAC
CTCAACCACTTCCCCTACACCTTCTACTTCATGGCCACGCCGCACGCGGCCCTCTTCGACTCGTACCCGCACGTCAAGGC
CTGGTGGGAGAGGATCATGGCGAGGCCGGCCGTGAAGAAGCTCGCCGCGCAGATGGTTCCCAAGAAGCCGTGATTTGCTA
GGCGGGATCTCGCATCGTGGGATCCGATTCCGATCACTGATCTGTGTGGCGTTTTCTTTTCTTGTTGGTGTCGCGAATAA
GGCAAATGAGCTCG------TG--TGTGTGTGGCTGGAATTGCACCAGCGTGCAGTTTTTGCGCTTTG----CGTGTGTG
TGGTCGTGAAAACTC-------------------------TTGAGATGGAACAATGTCTTCGTAATGCTTTCAGATTTGT
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------------------------------------------------------------------------CGCTTGGC
AAGCCTTAAATAAGATGTTTGTGTGTC--------TTTCTAGTCGATGATGTAAGCATGATTTCTAATTCCCGTATTGA-
---------------------------------------------------ATTTTTAAAAAGCAAATCAATTTGTATTT
GGGCAAAGCACTGAACGAGAACTAAAAAAAACCCGCAAAAAAAAAGAACTAAAAGAAAATTTGATATTGATTAAAATCCG
GCTAAACTTGAGGAACTTTCCAAAAAACAAATCACTTAAGAAGCCTGTAGCTTCCGATGTAAAAATATGGCGGAGTACTT
AGAAAGGGTAATTTGGTGTA------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------
>chr1A_637
GAAGAT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------GAAAAGAAGAGGCTGGATCTG----GAAAAAGGAATGCCCGGGTAGCTCGGCCCGACA-----AATCGTG
GCCGCTGTTCTAGAAACATCACGGAAAGCAATGGCACCCACCTCGCTGACCGGAGCCGTGATGAACTAATTGACTGCACC
CGTCAGCCCACACCTCACGGTCTCCC---CTTCAACCTTCTGGAGAGCTCACGTCCAACCATCCCACCATCCCACCAAGG
CACCAGCCACCTACCCGGACACTTTGATGCCGTATAAAATGGGGAG-GAGTTTGCGTCATGCTGCACACCGCTCAA----
-CACAGCAACACACTAACAC-----------------A-A-CCCGATCTCTCACTCTCTCGCGTGTAG--------CAGC
AACCAAGGGAAAAAATGGCGCCGGTGAAGGTGTTCGGGCCGGCCATGTCGACGAACGTGGCCCGGGTGCTGGTGTGCCTG
GAGGAGGTCGGCGCCGAGTACGAGGTGGTCGACATCGATTTCAAGGCCATGGAGCACAAGAGCCCCGAGCATCTCGTCAG
AAACGTAAGCTCCCCGACCACTCAAATCCTCTGGTTTCTCGTATCAGCTTGTTTT-------------------------
-------------------------------------------------------------------GGTTCTGATGCAA
GATGTTTCGATTTCTTGCAGCCGTTCGGCCAAATCCCTGCTTTCCAGGATGGGGATCTGCTTCTCTTCGGTA---TG---
-ATTAGTTTGCCT------TTTTC-AGT---TACTTTGTCCTTGTCAAAAGAAATGTTAC-------TTGCTTGGCCTCT
GTTTCGCGGCATCTTAATGGGACCGACTAGTAAAGCTAATGCTTCTTTTCAAGGGAAGTACTAGACTACTAGGAAAGTGA
ATTGTTTCCC---------------GTGGATGCTCGATGTTCAAACATCCTCTCAAATTCTCTAAAACCTCGTTGTTTTG
TTCTATTTTCAGAGTCACGCGCAATTGCAAAGTACGTGCTTCGCAAGTACAAGAAGAACGAAGTCGACCTGCTGAGGGAA
GGCAACCTCAAGGAGGCCGCCATGGTGGATGTATGGACGGAGGTCGACGCGCACACCTACAACCCGGCCATCTCGCCGAT
CGTGTACGAGTGCCTCATCAACCCGCTGATGCGCGGCCTGCCGACCAACCAGACGGTGGTGGACGAAAGCCTGGAGAAGC
TGAAGAAGGTGCTGGAGGTCTACGAGGCGCGCCTGTCCCAGCACGAGTACCTCGCCGGGGACTTCGTCAGCTTCGCCGAC
CTCAACCACTTCCCCTACACCTTCTACTTCATGGCCACGCCTCACGCGGCGCTCTTCGACTCGTACCCGCACGTCAAGGC
TTGGTGGGAGAGGCTCATGGCGAGGCCGGCCGTCAAGAAGCTCGCCGCACAAATGGTTCCCAAGAAGCCGTGATTTGCTA
GGCGGGATTTCGCATCGTGGGATCCGATTCCGATCACTGATCTGCGTGGCG-----TTTTCTTGTTGGTGTCGCGAATAA
GGCAATGAGCT---------------TGTGTGGCTGGAATTGCACCAGCGTGCAGTTTTTGTGCTTGCGTATCGTATGTG
TGGTTGTGAAAACTC-------------------------TCGAGAT---------------------------------
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>chr1A_733
--------------------------------------------------------------------------------
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---------------------------------GCACCGAACTCGCTGACCCAAGCCGTGATGCACTAATTGACCGGCCC
CGT-ACCGCACACCTCACGACCTCCT---CTTCACCCTTCCGGAGAGCTTACGTCCCAACCTCCCGC--------CAACC
A---------CTACTCGGAAACGCAGACGCCGTATAAGAAGGGAAACGAGTTGGCGTCATGCTGCACACCGCTCGGACGC
AGGTAG---TACACAAACACCAGAAACATACACACGCACACCCCGA--TCTCACTCTCTCGAGTGTACT--------AGC
AACCAAG---GAAAATGGCGCCGGTGAAGGTGTTCGGGCCGGCCATGTCGACGAACGTGGCCCGGGTGCTGCTGTGCCTG
GAGGAGGCCGGCGCCGAGTACGAGGTGGTCAACATCGATTTCAAGGCCATGGAGCACAAGAGCCCCGAGCATCGCGTCAG
AAACGTAAGATCCACGACCACTCAAATCCTCTGGTTTCCCGTATCACATTGTTTTGGCGCTA------------------
--------------------------------------------------------------------------ATGCAA
GATGTTTTGGTTTCTTTCAGCCGTTCGGCCAAATCCCTGCTTTCCAGGATGGGGATCTGCTTCTCTTCGGTA---TGATC
AATCACTTTGCCTTTGCTCTTTTC-AGT---TACTTTGTCCTTGTCAAAATAATTGTTAGTTAGTACCTGCTTGGCCTCT
GTTTCTCGGCATCTTAACGGGACCGGCTAGCAAAGTGAATGCTTCTTTTTTAAAGAAAGTAG-----AGTAGTGAAGTGA
ATTATAGCCCTCAAATTTGTTTCCGATGGACGCTTGGTGTCCAAATATCTTATCAAATTCTCAAAAAAAAA-TTGTTTTC
TTGTGTTTTCAGAGTCACGCGCAATTTCAAGGTACGTGCTTCGCAAATACAAGACGAACCAAGTCGACCTGCTGAGGGAG
GGCAACCTAAAGGAGGCGGCCATGGTGGATGTATGGACGGAGGTCGACGCACACAGCTACAACCCAGCCATCTCGCCGAT
CGTGTACGAGTGCCTCATCAACCCGATCATGCTCGGCCTGCCGACCAACCAGAAGGTGGTGGGCGAGAGCCTGGAGAAGC
TGAAGAATGTGCTGGAGGTCTACGAGGCACACCTCTCCAAGCACAAGTACCTGGCCGGGGACTTCGTCAGCTTCGCGGAC
CTCAACCATTTCCCATACACCTTCTATTTCATGGCCACGCCTCACGCGGCCCTCTTCGACTCGTACCCGCACGTCAAGGC
CTGGTGGGAGAGCCTCATGGCGAGGCCGGCCGTCAAGAAGCTTGCCGCACAAATGGTTCCGAAGAAGCTGTGATTTGCTA
GGCAGGGTTTTGCATCATGGGATCGGATCT------CTGATCTGTATGGCA-----TTTTCTTGTCGGTGTCGCTAATAA
GGCAATAAGCT-------------TGTGTGTGGCTGGAATTGCACCAGCGTGCGGTTTTTGTGCTTTG----CGTGTGCG
TGGTCGTGGAAACTC-------------------------TTGAGATGGAACAATGTCTTCATAATGCGTTCAGATTTGT
--------------------------------------------------------------------------------
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------------------------------------------------------------------------TGCTTGGC
AAGCCTTAAATAAGATGTTTGTGTGTC--------TCTCTAGTCGATGATGTTTGCATGGTTTCTAACTCCCGTATTGA-
---------------------------------------------------AATATATTT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>SNPs
---------------S-------S----------S------------------------------S-------S------
--------------------S-----------------------------------------------------------
--------S--S---S---------SS----------------S----SS--S--S------------------------
--S-----S-----------------------------------------------------------------------
----S--------S-----------SS-----------------------------------------------------
--------S-------------------------------------------------------------S---------
S-----------S-------S-----------------SS------------------------S------------S--
-----------S---S-S------------------S--------------S---S-------------------S----
--------SS------------------S-----------------------------------S------------S--
-----------------------------S---------------------S----------------------------
--------------------------S----------------------------S------------------------
-------------------------------------------------S------------------------------
---------------------------------------------------------------------SSSSSSS----
------------------------------------------------S-------------------------------
--------------------------S--------------------------------------S--------------
------------S--------------------------S-------------SS--SS--SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
--------------------------------------------------------------------------------
-----------------------SS--------------S-------S-S------------------S-----------
------S-------S----------------------------------------S------------------------
------------------------------------S-----------------------------S----S--------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S-----S----------------------------S----------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
-----------------------------S------------------S-------------------------------
--------------SSSSSS----------S-------------------------------------------------
-----S---------SSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------S-
------------------------SSSSSSSSSSS---------------------------------------------
S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-------------------------------------
--------------------------------------------------------------------------------
-S---------------S--SS----------------------------------------------------------
-----S-----------------SS--S--S-S---SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-----------S---S-------S----S--------S---S-S----SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1031
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------CACTCTCTCGCGTGTACTCC---------
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>reverse_5091
--------------------------------------------------------------------------------
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--------------------------------------------------GTGTCGGCTCAGACAATCGA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
