>input_sequence_62601
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-----------------------------------------------------------ATGTCGGCCAAGGTGAGCAAG
AAA---CGCTTCTTCTCCCTGTAATGTTCATG----GATTCTGAAATTCCGATCCTGATTCCATA--------CATGCAC
GCTCTTTGCTG------------------GGGGGATCTTGCTTTAGAATCCATCCCGGGAACGCTTTTCTCTCTT----T
TACTCTGCACCTGCACTTTGTTCTGGTGTCGGTCATACACTGCCTGCATCCAAACGTCTTCCTCTGCTTCGGACTGTAAA
CTAA-----------CGATGCTGGCGTGTTTTGCTCTGCTGCAGAAGATCGTGGTGAAGCTGGAGCTCCATGACAACAAG
GACAAGCAGAAGGCCATGAAGGCCGTCTCCGTCCTCGTCGGTACGTACCCCGCAACGCTCTGCTCTTTTCTGTTCTGCTA
G---------------------ATCCATTAGACAAAGACCACCGATCGAATGACTGACTGACGCAGACGGCTCTGCTCTG
CTCTGTTCCATGCCGTTTTACTTCGCCAGGCATCGATGCCATATCCATGGACCTGGCGTCGCGCAAGATGACGGTGATCG
GCACGGTGGACCCGGTGCACGTGGTGAGCAAGCTGCGCAAGGGCTGGGCGGCCTACATCGAGTCCGTCGGCCCGGCCAAG
GAGCCCGAGAAGAAAGAGGAGAAGAAGGAGGAGGCCAAGAAGGAGGGAGACGGGG---CCAAGAAGGAAGGCGGCGACGG
CGGCGACGCCAAGAAGGAGGGCGACGGGAAGAAGGAGGGCGACGGGAAGAAGGACGGCGA---CAAGAAGGAGGAGGGTG
ACGGCAAGAAGGACGGCGACGGGAAGAAGGACGGCGACAAGAAGGAGGAGGGCGATGGCAAGAAGGACGACCAGAAGAAG
CCCGCCGCCGTGGCCCCGCTGCCGTTCCCGCACCACATGCCGCTGCCGCACCACATGCCGCCGCCCTACATGTACAACGC
GGACTACATGATGAACCAGTACCGGCCGGCGCCGCCGGCCTACCCGCCGCCGTACGTGCCGCCGCAGCACTACTACGTGC
GGAACATGAGCATGGAGGAGAACCCAAACTCGTGCGTCATCTGCTAA---------------------------------
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>chr4B_1_TraesCS4B01G319800
ACCGACCGAGCGTACTAGCTACTG---GAACAGCTCGAATCATACGTTGGAATCACCTCGGAATCCGCAAAAACGAGACG
GCCCGAATCGTCCCGTCCCGCTAGCATCCAGCCGGAA------------------CACAAGGCAGACACGAACCGGCGGT
CCGGCGT--GCACACAGCGCCGGGAATCGACCTCTCACGAAAGATAAAGCGAGCGTGACCCGTCACCGGTCGGTCACGCA
CAGCCCACAACGCACGCGCGCGCACACACTCGACGCGTGACAAGTCGAGTTGGTTTCGTCTCGGAGGAATTCATCCGGGA
ATCAGAATC----AGAGG----ACACCGGACCGGAGGCAGCGGCAACACAAACAGAGGAGGAGGAT----GGGCGCGATG
GCGGGAGAAACCGGAGAGGAGCTCGAATGATCGGGGGGCACGGCCGTGTGGGGCGGACACGGGCCGCCAGATCGGAGCAG
GCAGCAGAGCGGCAGCGCGGCATTCCCGCCTGATCGCCTCGACTCACCCTGTACTGTGCGCACTGT--------------
--GAGCGCGCAGTCGCACACGGCTGGCCAGTGGCCGCACACCAAACCAAAAGGCGGGGA--CGTACGAGGGCCGCCGGTG
AGGAAGAGAGA----CACATCCACGTCAGACAGATATAGATCGATATAGAGGGCACCG----GGGCTGTGCTTCGCACCA
ACGCTACCTAGGCTAGCTAGCCACCAAAGCGCCCGCCCGCCCGCCCGCCGATCGCCCCTCCTCTCCTCTCCTCTCCTCGC
CGCTAG----TATTTAGGACCACCCGCGATCACCAATTCCCTTTGCCTCTTATGTGCCATTGCTGCAGTTGCGTGACACG
CTCGCCTAACTCCCGCACGCAC------------CCCCTCCACCCTCCGCTGCCCGTGGCCGGCTGTACCGCACCA----
--------TTCCCACACACCCTCACTTAGCTAGCTGCTCCCATTATTCTCACCTGTCCCCATTTGATCCATCTTCTGATC
GTCTACCCGCTCGCCTTCTCTTTCCCTGCGA----------GCAGCCCAGGCCGGAGGCATGTCGGCCAAGGTGAGCAAG
AAA---CGCTTCTTCTCCCTGTAATGTTCATG----GATTCTGAAATTCCGATCCTGATTCCATA--------CATGCAC
GCTCTTTGCTG------------------GGGGGATCTTGCTTTAGAATCCATCCCGGGAACGCTTTTCTCTCTT----T
TACTCTGCACCTGCACTTTGTTCTGGTGTCGGTCATACACTGCCTGCATCCAAACGTCTTCCTCTGCTTCGGACTGTAAA
CTAA-----------CGATGCTGGCGTGTTTTGCTCTGCTGCAGAAGATCGTGGTGAAGCTGGAGCTCCATGACAACAAG
GACAAGCAGAAGGCCATGAAGGCCGTCTCCGTCCTCGTCGGTACGTACCCCGCAACGCTCTGCTCTTTTCTGTTCTGCTA
G---------------------ATCCATTAGACAAAGACCACCGATCGAATGACTGACTGACGCAGACGGCTCTGCTCTG
CTCTGTTCCATGCCGTTTTACTTCGCCAGGCATCGATGCCATATCCATGGACCTGGCGTCGCGCAAGATGACGGTGATCG
GCACGGTGGACCCGGTGCACGTGGTGAGCAAGCTGCGCAAGGGCTGGGCGGCCTACATCGAGTCCGTCGGCCCGGCCAAG
GAGCCCGAGAAGAAAGAGGAGAAGAAGGAGGAGGCCAAGAAGGAGGGAGACGGGG---CCAAGAAGGAAGGCGGCGACGG
CGGCGACGCCAAGAAGGAGGGCGACGGGAAGAAGGAGGGCGACGGGAAGAAGGACGGCGA---CAAGAAGGAGGAGGGTG
ACGGCAAGAAGGACGGCGACGGGAAGAAGGACGGCGACAAGAAGGAGGAGGGCGATGGCAAGAAGGACGACCAGAAGAAG
CCCGCCGCCGTGGCCCCGCTGCCGTTCCCGCACCACATGCCGCTGCCGCACCACATGCCGCCGCCCTACATGTACAACGC
GGACTACATGATGAACCAGTACCGGCCGGCGCCGCCGGCCTACCCGCCGCCGTACGTGCCGCCGCAGCACTACTACGTGC
GGAACATGAGCATGGAGGAGAACCCAAACTCGTGCGTCATCTGCTAAGTCAAAGTCGATCCCTCGATCGCGCGCGTACGT
C----CCGAGAGGCGACCATGCATGCATCTGTGTATAGTAGTATTTTCTCGACCGTTTTTACGAGACCAGCAAAGTTTGC
AAGATGAAACTGTACAAC---TAGTAGTCTACTATAGCAC------TACGTACGTACATACGTACATTTGTAATGTGGAA
ATTGCGATGCTACGTACTGCCTGCCTGCCCTAGTACATACCACAGCCACCCAACATTCGGTTACATCCAGGGTGCTAGCT
TGTTTAGCACAAATGTGAGCCGAAACATTAGCTGATCTCCCTACATGCTAAACTACAAAAGACTGAAAATAAATGACATG
CTCCCTAATCTCGGCCAAGATAGACGCCACACCCGCACGAACATTGGGACGCGTATTCCAGAGATTCACAATCTCCAAAT
TATCAGACTCGAAAACCACCTCAGAATAGCCTCGTAGATGAGCAAAGAGAACACCATCGTGTAGAGCGAGTGCCTCGGCT
ATAAGAGGATCAGTGATTCCCGGGTCTTCTTGTAACCAGTCTCTCAGCTGATTCAGCTGGAGCTGTTAGTGTTGAATAAA
GAGCTCCCAAATTTCCCTGCAAAAAAAAAGTACATACCACAGCCACATCATCTTTCCTTTCAACAATAGAGAACAAAACT
AGAGAGAGAGAAAGAGTGGGTTTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGTGCGCGATGCATGATGGGTGGTGATGCAGCATGTGGC
TGCTGTTCAAACTATGCTTT
>chr4D_1
ACCGGCCGAACGTACTAGTACTAGCTAGAACAGCTCGAATCATACGTTGGAATCACCTCGGAATCCGCAAAAACGAGACG
GCCCGAATCGTCCCGTCCCGCTAGCTTCCAGCCGGAGGAGGAGCGCGCGCGCGCGCACAAGGCAGACACGAACCGGCCGG
CCGGCGC--GCACAGCA--CCGGGAATCGACCTCTCAGGGGAGATAAAGCGAGCGTGACGGGTCACCGGTCGGTCACGCA
CAGCCCACGACGCACGCGCGCGCGCGCACTCGACGCGTGACAAGTCGAGTTGGTTTCGTCTCGGAGGAATTCATCCGCGA
ATCAGAATCAATCAGAGG----ACGCCGGACCGGCGGCGGCAACGGAGGAGGCAAGCT-------AGCCAGCGCGCGGTG
ATGGGGGAAACCAGATCGGAACGGGCGG--TCGGGGCACACGGCCGCGTGGGGCGGACGCGGGCTGCCAGATCGGAGCGG
GCAGCACAGCGGCAGCGCGGCATTCCCGCCCGATCGCCTCGACCCACCGTGTACTGTGCGCACTGT--------------
--GCGCG------------CGGCTGGCCAGTGGCCGCACACCAAACCAAAAGGCGGGGAGACGTACGAGGGCCGCCGGTG
AGGAAGAGAGAGAGACACATCCACGTCAGACAGATATAGATAGATACAGTAGAGG--GCACTGGGCTGCGCTTCGCACCA
ACGCTACCTCGGCTAGCTAGCCACCAAAGCTCCCGCCCGCCCG---------------------CCTCTCCTCTCCTCGC
CGCTAGTCTCTATTTAGGACCACCCGCGATCGCCAATTCCCTTTGCCTCTTGTGTGCTGCCGCTGCAGTTGCGTGACACG
CTCGCCTAACCTCCGCACCCCGTCGGGCCTCTTTCCCATCCGTCCTCCGCTGCC-GTGGC----TGTACCGCACTGCCGC
GCTCGCCGTTCCCACACACCCTCACTAGCCA-----CTCCCATTATTCCCACCTGTCCCAGTTG-----ATCTTCCGATC
GCCTGCCCGTTCACCTTCTCT----CTGCGA----------GCAGCCCAGGCCGGAGGCATGTCGGCCAAGGTGAGCAAG
AAA---CGCTCCTTCTGCTTGTAATGTTCATGGATTGATTCTGAAATTCCGATCCTGATTCCATATGCGTCCACATGCAT
GTTCTTTGCTCGAGGTTCTCTT-CTCCATGGGGGATCTTGCTTTAGAATCCTTCCCGGGAACGCTTTTCTCT-TT----T
TACTCTGCACCTGCACTTTGTTCTGGCGTCGGTCATACAGTGCCTGCATCCAAACGCCTTCCTCTGCTTCGGACTGTAAA
CTAACTGTGGCTTGCCGATGCTGGCGTGTT-TGCTCTGCTGCAGAAGATCGTGGTGAAGCTGGAGCTGCATGACAACAAG
GACAAGCAGAAGGCCATGAAGGCCGTCTCCGTGCTCGTCGGTACGTACCCCGCACCGCTCTGCTCTCTTCTGTTCTGCTA
G---------------------ATCCATCAGTCAAAGACCACCGATCGAATGACTGACTGACGCCGACGGCTCTGCTCTG
CTCTGTTCTACATCGTTTTATTTCGCTAGGCATCGACGCCATATCCATGGACCTGGCGTCGCGCAAGATGACGGTGATCG
GCACGGTGGACCCGGTGGACGTGGTGAGCAAGCTGCGCAAGGGTTGGGCGGCCTACATCGAGTCCGTCGGCCCGGCCAAG
GAGCCCGAGAAGAAGGAGGAGAAGAAGGAGGAGGCCAAGAAGGAGGGCGGCGACG---CCAAGAAGGAAGGCGGCGACGG
CGGCGACGGCAAGAAGGACGGCGATGGGAAGAAGGACGGCGACGGGAAGAAGGACGGCGA---GAAGAAGGAGGAGGGCG
ACGGCAAGAAGGACGGCGACGGGAAGAAGGACGGCGACAAGAAAGAGGAGGGCGACGGCAAGAAGGACGACCAGAAGAAG
CCCGCCGCCGTGGCCCCGCTGCCGTTCCCGCACCACATGCCGCTGCCGCACCACATGCCGCCGCCCTACATGTTCAACGC
CGACTACATGATGAACCAGTACCGGCCGGCGCCGCCGGCCTACCCGCCGCCGTACGTGCCGCCGCAGCACTACTACGTGC
GGAACATGAGCATGGAGGAGAACCCAAACTCGTGCGTCATCTGCTAAGTCAAAGTCGATCCCTCGATCGCTCGCGTACGT
ACGTTCCGTGGGGCGACCATGCATGCATCTGTGTATAGTAGTATTTTCTCGATCGTTTTTACGAGACCAGCAAAGTTTGC
AAGATGAAACTGTACAACTAGTAGTAGTCTACTATAGCAC------TACGTACGTACATACGTACATTTGTAATGTGGAA
ATTGCGATGCTACGTACTGCCGGCCTGCCCTAGTACAT------------------------------------------
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-----------------------------GTACATACCACAGCTACATCATCTTTCCTTTCAACAACAGAGAACAAAAGT
AGAGAGAG-GAAAGAGTGGGTTT---------------------------------------------------------
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----------------------AGAGAGAGAGAGAGAGAGCAGTGTGCGGTGCATGATGGGTGGTGATGCAGCATGTGGC
TGCTGTTCAAACTTTGCTTT
>chr5A_25
---------------------------GAACAGCTCGAATCATACGTTGGAATCACCTCGGAATCCGCAAAAACGAGACG
GCCCGAATCGTCCCGTCCCGCTAGCATCCAGCCGGA------------GCGCGCGCGCACGGCAGACACGAACCGGCCGG
CCGGCCGGCGCGCACAGCGCCCGGAATCGACCTCTCGGGGGAGATAAAGCGAGCGTGACCGGTCACCGGTCGGTCACGCA
CAGCCCACGACGCACGCGCGC-----------------GACAAGTCGAGTTGGTTTCGTCTCGGAGGACTTCATCCGGGA
ATCAGAATC----AGAGGCCGTACACCGGACCGGAGGCAGCGGCAGCCGAGGAGGGAAGCTAGCCAGCCAGCGCGCGGTG
ATGGGGCAAACCAGAGAGGAACTGGAATGATCGGGGGGCACGGCCGCGGGCT----------------------------
---------------------------GCCAGATCGCCTCGACTCGCCCTGTACTGTGCGCGCTGTGGGCGCGCGCGCAG
TCGCGCA------------CGGCTGGCCGGTGGCCGCACACCAAACCAAAAGGCGGGGAGACGTGCGAGGGCCGCCGGTG
AGGAG----GAGGGACACATCCACATCAGATAGATATAGGTAGATAGATAGACGTACGCACTGGTCTGCGCTTCGCACCA
ACGCTACCTAGGCTAGCTAGCCACCAAAGCT-----------GCCCGCCGATCGCACCTCCTCTCCTCTCCTCTCCTCGC
CGCTAGTCTCTATTTAGGACCGCCCGCGATCACCAATTCCCTTTGCCTCTTGTGTGCCATCGCTGCAGTTGCGTGACACG
CTCGCCTAACCTCCGCACCC----------------CCTCCACCCTCCGCTGCC-GTGGCCGGCGGTACCGCACCA----
--------TTCCCACACACCCTCACTAGCTTAGCTACT-CCGTTGTTCTCACCTATCCCATTTG-----ATCTTCTGACC
GCCTACCCGCTCACCTTCTCC----CTGCGAGAGACGGTGTGCAACCCAGGCCGGAGGCATGTCGGCCAAGGTGAGTGAG
CAAGCGCGCTTCTTCTTCCCGTAATGTTCATGGATTGATTCTGAAATCCCTATCCTGATTCCATATGCGTCCACATGCAT
GTTCTTTGCTCGAGGTTCTCTTCCTCCATGGGGGGTCTTGCTTTAGAATCCTTCCCGGGAACGCGTTTCTCTCTTTTATT
TACTCTGCACC---------------------------------TGCATCCAAATGTCTTCCTCTGCTTCAGACTGTAAA
CTAACTCTGGCTTGCCGATGCTGGCGTGTT-TGCTCTGCTGCAGAAGATCGTGGTGAAGCTGGAGCTCCATGACAACAAG
GACAAGCAGAAGGCCATGAAGGCCGTCTCCGTGCTCGTCGGTACGCACGCCGCACCCATCTCGTCCGCAGTCCGCACTGC
TCTGCCTTTTTTCCCATGATGAATCCATTAGTCAAAGACCACCAATCCACTGACTGACTGACGCCGACGGCTCTGCTTTC
CTCTGTTCCGCGTTG-TTTATTTCGCCAGGCATCGACGCCATATCCATGGACCTGGCGTCGCGCAAGATGACGGTGATCG
GCACGGTGGACCCGGTGGACGTGGTGAGCAAGCTGCGCAAGGGCTGGGCGGCCTACATCGAGTCCGTCGGCCCGGCCAAG
GAGCCCGAGAAGAAAGAGGAGAAGAAGGAGGAGGCCAAGAAGGAAGGCGGCGACGGGGCCAAGAAGGAAGGCGGCGACGG
CGGCGACGCCAAGAAGGAAGGCGACGGCAAGAAGGACGGCGACGGGAAGAAGGACGGCGATGGCAAGAAGGAGGAGGGCG
ACGGCAAGAAGGACGGCGACGGGAAGAAGGACGGCGACAAGAAGGAGGAGGGCGACGGCAAGAAGGACGACCAGAAGAAG
CCCGCCGCCGTGGCCCCGCTGCCGTACCCGCACCACATGCCGCTGCCGCACCACATGCCGCCGCCCTACATGTTCAACGC
CGACTACATGATGAACCAGTACCGGCCGGCGCCGCCGGCCTACCCGCCGCCGTACGTGCCGCCGCAGCACTACTACGTGC
GGAACATGAGCATGGAGGAGAACCCAAACTCGTGCGTCATCTGCTAAGTCAAAGTCTATCCCTCGATCGCTCGCGTACGT
C----CCGTGGGGCGACCATGCATGCATCTGTGTATAGTAGTATTTTCTCGATCGTTTTTACGAGACCAGCAAAGTTTGC
AAGATGAAACTGTACACCTAGTAGTCGTCTACTATAGCACCACGCGTACGTACGTACATACGTACATTTGTAATGTGAAA
ATTGCGAGGCTACGTACCGCCTTCCCT-----------------------------------------------------
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----------------------------AGTACATGCCACAGCTAC----------------------------------
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>SNPs
----S----S--------SSSSS---------------------------------------------------------
------------------------------------S----------------------------------------S-S
------S------------------------------S-SS-------------------S-------------------
--------S--------------S-S------------------------------------------------------
---------------------------------------------S-SS-SS---SSSSSS--SSS-----S-----S--
SS---S------S-------S--S----------------------S-----------S-----S-------------S-
------S-----------------------S-------------------------------------------------
---S---SSSSSSSSSSSS-------------------------------------------------------------
-----------------------------------------S----S-----SSSS------------S-----------
------------------------------S------------------------S------------------------
---------------------------------------------------S--------S-------------------
----------SS------S-SS--------------------------------S-------------------------
--------------------------SSS------S-----------------------SS--SSSSSS-----------
-S----------S--------SSSS-------------------------------------------------------
----------------S--------------------------------------------------------------S
-S--------S----------------------------------------S----------------------------
--------------------------S------------S----------------------------------------
------------------------------S-------------------------------------------------
--------------------------------S---------------------S-----------S-------------
-------------------------------S--------------------------------S---------------
----------S-S-------S---------------S-------------------------------------------
-----------------S--------------------------------------------------------------
-----------------------------------------------S-S--SS--------------------------
------------------S-----------------S-----------------------------------------S-
-------------------------------------------------------S------------------------
-------------------------------------------------------------------------S------
S-------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------S-S-----------------------------------------S---------------------------
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--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S----------------------S-----------S-
--------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS-----------------------S---S------------------------------
-------------S------
>forward_221
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-----------------------------------------AGATAAAGCGAGCGTGACCC-------------------
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>reverse_1307
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--------------------------TGTCGGTCATACACTGCCTG----------------------------------
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>forward_377
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-------------------------------------CAGCGGCAACACAAACAGAG-----------------------
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>reverse_2456
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-------------------------------------------------------TTCGGTTACATCCAGGGTGC-----
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