>input_sequence_62585
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGATCACATAGAAGGAAGGAAGATGA
CTGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGCCCGTTCGTCCACCGTGCGGAGGTGGCCCTGCGCCTCAAGGGAGTC
GCTTACCAGCTCATCACAGAAGACCTCTCCAACAAGAGCGAGCTGCTGCTCAGCCACAACCCCGTCCACCACAGGGTGCC
GGTGCTCCTCCACGGCGACAAGGCCATCTGCGAGTCGCTGGTCATCCTCGAGTACATCTACCAGGCCATTGGCGGCCCGC
CGCTCCTGCCAACCGACCCCGGCGAGAGG-CCAAGGCCCGCTTCTGGGCCAAGTTCTTTGCCGAAAAGGT----TACCAT
GCATGCCGGAATATTA------TTTTTTAGAACTCAAATTCATCTTTGCAAAATGTAGGATTCGCCAACAAATTCCAAAT
AT-------AATCTCATTATGC--CATGTGTGCGTGAATTATTTGATCAGTGCCATAGTTTTAAATAGCCGGCTACTATA
GCTCTGCTATAGCCCGCTATATAGCCTTTTCAGCAGGGTGCCGCTAAATGGCCGCCTTCACAAATAGCCAGCTATAGCTT
CGCTCCGCTATAGCTAATTTGAAGGCCCGTCGCTATTTTTCTTAGGCTGCTATTTAAAACATTTAGTGCCTGATGTTGGT
GTGGCTGGCACTGTGGACGGCGGGCAAGACACGGAAGGTTCTCATGGAGGATGCTAAGGAACACTTGGCGATAGTGGAGA
CGCAGCTCAAGCAGAAGAGATTCTTCGGAGGCGCTGCCATCGGCCTCGTCGACATTGCCGGCGCCAGCGTGCTGTCCCAC
TGGGCAGGCGTGCTGCAAGAGGTCGCAGGGATAACTGTCATGAGGGATGACGA--------------------GGATGGA
GGACTACAACGCCGACGAAGTTGTCACTAAGTGCCTGCTAGATAGGGACCAGGTTGTGACCCACTTCATCGTTATCAGAG
GGAAGTGCGTCGCCGCGGCCTAGTCCATGCTACCCAATTATCTAGCGAGCAAATAGAC-TAAGC--------TAGAGGTT
CGTGTCGT---------TTG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AATTAA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr3A_1_TraesCS3A01G488300
CTGCTGGCGGACCATGGTTGCCAGCGGATGATGATCTCGGAGCAGATTGAAATGGATTGGAGTGATGGTGGAGCTTGGGA
GTGGCAGCGCAGACAGGATGGCGAGGGTGAAAATAGGATGAGTACGGTTGAGGCTCGTTGAACAACTTAAATAACCTGAT
TTGGCCCCTTGGGCTGCGCACCGGAGTGATGGTGTGAATGCGTCCTCACCGGATCGATGAGATTTGGCATGTGTCCGAAT
GGGTCCTTTCTGTAAGTCTAAATTGGCGGACCCGTCTAGATGAGACTGGACCTCCTTATATCCGCCTCAGATATAAACTG
AATATGGAGATATAGGTGAGCCCAAACGTATAGGACCGATTTGAGAAGTCAGACTATTAAAGGTCAAGTAGTGGCATCCT
ATTACCCTAAAGGGTAAGTTGTGTTGAAGTCAATCAAAGGGTGAACTGCAGTTGCCCTTTCATTCACCTAGAATTTTGGC
TTGCTCTTAGGGTGGACTACATTAGAGGTATTGGAACTACGTTTCGTGTATCCTTTTTTCTTAGGAAATACTACGAGGTC
ATGATTTAGTGACCAGTCACTAACTGGGCTGTCCATTCG---GAGCATCGAGGAGCCCATGCTCTAAG-ATGCGGTGCAC
TAGCGTTTTGATGGGCCGTGGCCT---CGTCGTCTGCAGCCGAGAAAGCCCGTGCTGCGAGGTGCGGAGGGAGACGAGGC
GAATTCGAAATTTGGCCG-CCCGTTCTGCCGTTGCTGGTCATCATCAACATCGTCTCATGTTCGGAGATGCTCTTGACCA
AAATGCTTTCGCACGGAAAGAGACTACG--AAAAAGAAAAGTCTCGTGCCACCGCGGCGACATGTGCTAG-AAACTACTG
TAGAAACGAAGCAACCAGCAGTCTTCTTATG-TCTCAAAAGACAAAGGCAAAATGACTTCCACTTTGACGACTCT-GAGG
AATTCCTAGCACCTTATATTATATATATACGTACCAACACCATACGCATC-TCCAGATCACATAGAAGGAAGGAAGATGA
CTGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGCCCGTTCGTCCACCGTGCGGAGGTGGCCCTGCGCCTCAAGGGAGTC
GCTTACCAGCTCATCACAGAAGACCTCTCCAACAAGAGCGAGCTGCTGCTCAGCCACAACCCCGTCCACCACAGGGTGCC
GGTGCTCCTCCACGGCGACAAGGCCATCTGCGAGTCGCTGGTCATCCTCGAGTACATCTACCAGGCCATTGGCGGCCCGC
CGCTCCTGCCAACCGACCCCGGCGAGAGG-CCAAGGCCCGCTTCTGGGCCAAGTTCTTTGCCGAAAAGGT----TACCAT
GCATGCCGGAATATTA------TTTTTTAGAACTCAAATTCATCTTTGCAAAATGTAGGATTCGCCAACAAATTCCAAAT
AT-------AATCTCATTATGC--CATGTGTGCGTGAATTATTTGATCAGTGCCATAGTTTTAAATAGCCGGCTACTATA
GCTCTGCTATAGCCCGCTATATAGCCTTTTCAGCAGGGTGCCGCTAAATGGCCGCCTTCACAAATAGCCAGCTATAGCTT
CGCTCCGCTATAGCTAATTTGAAGGCCCGTCGCTATTTTTCTTAGGCTGCTATTTAAAACATTTAGTGCCTGATGTTGGT
GTGGCTGGCACTGTGGACGGCGGGCAAGACACGGAAGGTTCTCATGGAGGATGCTAAGGAACACTTGGCGATAGTGGAGA
CGCAGCTCAAGCAGAAGAGATTCTTCGGAGGCGCTGCCATCGGCCTCGTCGACATTGCCGGCGCCAGCGTGCTGTCCCAC
TGGGCAGGCGTGCTGCAAGAGGTCGCAGGGATAACTGTCATGAGGGATGACGA--------------------GGATGGA
GGACTACAACGCCGACGAAGTTGTCACTAAGTGCCTGCTAGATAGGGACCAGGTTGTGACCCACTTCATCGTTATCAGAG
GGAAGTGCGTCGCCGCGGCCTAGTCCATGCTACCCAATTATCTAGCGAGCAAATAGAC-TAAGC--------TAGAGGTT
CGTGTCGT---------TTG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AATTAAGATGAAGATCTGTCGTAAAATAAGACATAGGGGCAGTTGGTGGAATGTTATTGTTCGATGCCA
CTGTGCTCGGTTTGCCTATGCAGGAAGCGGCCTCTAGG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GGA
TCTGTAGCCAGTTTGGTTCACGCGCACACCTCTGTGCAATGAAAATTTTGGTGCCTATTGTAAGCCTGAGACGGTTGTGA
TTTTCGAGTTGGCTGATGCCTCGTAGTCTGACTATCAGACCCAGGTCGGCTCTGTAGCAAACCAGGAGGACACTAATCCT
ATACGGCTCGTCGGTTGGTTCTCGCGCGATCTCTGGGCGAATATTGCTGAATTGACCAGTTGATCTCTCTTCTCTTGAGG
AACCAGAGCCGAGAAAACTCAGAGATCCATGGTTCTACAAAATTCAGAGTGACTGAACTATATATAGTCCGGTTGCTAAC
GTCAACATGTGTAGCTAGTTCTAATGCATCTGGCAGATGGTTGGTTGCCGTCGCTATTTGATGTTTGGTTGACATGTATG
TCTATCCAAATGAATACAGTCATTCACTACCATGCCTTTGGGTAGCTAGCTTCGTGCCAACTTTGATCAATTTCCATATT
GAATAGACAATATGTACAAGTTTTGACCATTACCGTAACTACTGTCCATTTATCTCTCAAATAGATAGATTGCTGAATGC
CACCAAGTTTTCGAAACCATTTATACACATGCCGTATCGAAGTACTATATATTTGGTGATACTCACTCGTCTCTTTCCTT
TTTGTAGCGTATACATAGTTATGTTGTTCAAAAAGTGTACCTATGCACAAGATATAGCATAACCTATATCCATGGTATAA
AAGTTTAGAAGCTCAACCGTGCGACGTGCATTGTGGGCTGCACAAAATGTACTCTCTGTACCTGTATGAATAGATGGTGG
TGGAACAGTACAAGTGCCCAAGCAAGTTAATGAAGTTACCGACAAACTAATTAGTGAAACTTCCGAGCATATCCGTTCTA
ATTTCTTTTACTATCT
>chr3D_1
CTGCTGGCGGACCATGGTTGCTAGCGGATGATGATCTCAGAGCAGATTGAAATGGATTGGAGTGATGGTGGAGCTTGGGA
GTGGCGGTGCAGACAGGATGGAGAGGGTGAAAATAGGATGAGTAGGGTTGAGGCTCGTTGTCTGGCTTAAATAGCCTGAT
TTGGTCCCTCGGGCTGCGCACCGGAGCGACGGCGTGAATGCGTCCTCACCGGATCGATGAGTTTTAGCGTGTGTCCGCGT
GGGTCCTTTCAGTCAGTCTGAATTGGCGGACCCGTCCGGGCGAGACCGGACATCCTCATATCCGCCTCAGATATGAACTG
AACATGGGGGCGCTGGTGAGCCCAAACGTATAGAACTGGTTTGAGGAGTCGGAC--------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TACAAGGTC
ATGATTTAGTGATCAGTCACTAACTGGGCTGCCCATTCG---GAGCATCGAGGAGCCCATGCTCTAAGGATGCAGTGCAC
TAGCGTTTTGATGGGTCGTGGCCT---CGTCGTCTGCGGTCGAGAAAGCCCGCGCTTCCAGGTGCGGAGGGAGACGAGGC
GAATTCGAAATTTGGGCGTCCCGTTCTGCCGTTGTTGGTCATCATCAACATCGTCTCATGTTCGGAGATGCTCTTGACCA
AAATGCTTTCACACGGTAAGAGATTGAGAAAAAGAAAA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr3D_581
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TAACTGGGACGTCCGTTCGGATGAGCATTGAGGAGCCCATGCTCTAAGGATGCAGCGCAC
TGGAGTTTTGATGGGCCGAGGCCT---CGTCGTCTGCGGCCGAGAAATCCCGCGCTTCCAGGTGCGGGGGGAGACGAGGC
GAATTCGAAATTTGGCCGTGCCGTTCGGCCGTTGCTGGTCATCATCACCATCGTCTCATATTCAGAGATGCTCTTGACCA
AAATGCTTTCACACAGTGAGAGATTGGAAAAAAGAAAAAAGTCTCGTGCCACCGCGGCGACGTGTGCTAGAAAACTAGTG
TAGAAACGAAGCAACCAGCAGTCTTCTT-CTATCCCAAAAGACAATTGCAAAATGACTTCCACTTTGACGAGCTGAGAGG
AATTCCTACCACCT------ATTTATACACGTACCAAC--CATACGCATCTTCCAGATCACGAAGAAGGAAGCAAGATGA
CTGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGCCCGTTCGTCCACCGTGCGGAGGTGGCCCTGCGCCTCAAGGGAGTC
GCCTACGAGCTCATCACGGAAGACCTGTTCAACAAGAGCGAGCTGCTGCTCCGCCACAACCCCGTCCATCACAGGGTGCC
CGTGCTCCTCCACGGCGACAAGGCCATCTGCGAGTCGCTGGTCATCCTCGAGTACATCGACGAGGCCTTTGATGGCCAGC
CGCTCCTGCCAACCGACCCCGGCGAGAGGGCCGAGGCCCGCTTCTGGGCCAAGTTCTTTGCGGAAAAGGT----TACCAT
GCATGCCTGAATATTACTCCTATTTTTTACAATTCAAATTTGTTGTCGCAAAAAGTAGGATTGGCAAACAATTTCGAAAT
ACATACTCAATTCTCATTATGC--C--GTGTGCGTGAATTGTTTGGTCA-------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTGCCTGATGTCGGT
GTGGCTGGCGCTGTGGACGGAGGGCGAGACACAGAAGGTTCTCATGAAGGATGCTAAGGAACATCTGGCGATAGTGGAGA
CACAGCTCAAGGAGAAGAGATTCTTCGGAGGCGTTGCCATCGGCCTCGCCGACATCGCCGGCGCCAGCGTGCTGTCCCAC
TGGGCTGGCGTGCTGCAAGAGGTCGCTGGGATAACCATCATGAGCGATGACGAGTATCCTGCTATTCGCCGGTGGATGGA
GGACTACAACGCCGACGAAGTTGTCACGGAGTGCCTGCCGGATCGGGACCAGCTTGTGTCCCACTTCACCTCTATCAGAG
GGAAGTGCGTCGCCGCGGCCAAGTCCATGCTACCCAATTATCTAGCCACCAAATAGACCTAAGCGGCTAAGCTTGTGGTT
AGTGTGATGCCTGTGGGTTG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AATTAC-ACGAAGATCTGTCGTAAAATAAGACATAGGGGCAGTTGATGGAATGTTATTGTTCAATGCCA
CTGTGCTCGGTTTGCTTA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr3A_634
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CAC
TAGCGTTTTGACGGGCCAAGGCCT---CGTCGTGTGCGGCCGAGAAAGCCCCCGCTGCCAGGTGCGTAGGGAGACGGGTC
AAATTTGAAATTTGGGCGTCCCGTTCTGCCGTTGCTGGTGTTCATCACCATTGTCTCATATTCCGAGATGCTCTTGACCA
AAATGATTTTACACGGTGAGAGAGATCG-----------AGTCTCGTGCCACCGCGGCAACGTGTGCTAGA---------
----AACGAAACAACCAGCAGTCTTCTT-CTATCCCAAAAGACAAAGGCAAAATGACTTCCACTTTGACGAGCTGAGAGG
AATTCCTAGCAC-------TATATATACACGTACCAAC--CATACCTATCTTCCAGATCACGAACAAGGAAGCAAAATGA
CGGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGTCCGTTCGTCCACCGTGCCAAGGTCGCCCTGCACCTCAAGGGAGTC
GCCTACGAGCTCATTACGGAAGACCTCTCCAACAAGAGCGAGCTGCTGCTCCGCCACAACCCCGTCCACCACAGGGTGCC
CGTGCTCCTCCACGGCGACAAGCCCATCTGCGAGTCGCTGGTCATCGTTGAGTACATCGACGAGGCCTTTGATGGCCCGC
CGCTCCTGTCAGCAGACCCCGGCGAGAGGGCCGAGGCCCGCTTCTGGGCCAAGTTCTTTGCGGAAAAGGTAGGTTATCAT
GCATGCCTGGAAA------CTATTTTTTACAACTCAAATTCGCTGTTCCAAAAAGGTTACATAGTG----------AAAT
AT-------ATTCTCATTATGT--T--GTGTGCGTGACTTGTTTGATCA-------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTGCCTGATGTCGGT
GTGGCTGGCGCTGTGGACGGAGGGCGAGACACGGAAGCTTCTCATGGAAGATGCTAAGGAACACTTGATGATAGTGGAGA
CGCAACTCAAGGAGAAGAGATTCTTCGGTGGCGCTGCTATCGGCCTCGCCGACATCGCCGGCGCCAGCGTTCTGTCCCAC
TGGGCGGGCGTGCTGCAAGAGGTTGCTGGGATAACCGTCATGAGTGATGACGAGTATCCTGCTATCCACCGGTGGATGGA
GGACTACAACGCCGACGAAGTTGTCATGGAGTGCCTGCCAGATCGGGAGCAGCTTGTGTCCCACTTCACTGCTATCAGAG
GAAAGTGCATCGCCGCGGGGAAGTCCATGCTACCCAATTATGTAGCCAGCAAATAGACCTAAGC--------TAGTGGTC
CGTGTGATGCCTCCGGCTTGAGGCCCTATTTGGTTCCAAATAAGTCACCTGATTTATAAGTCAAGTGATTTTAAAATCAA
TAACTTATAAGTCATAACTGTTTGGTTGTCACCTGACTTATAAGTCACCTAACCACATCTTCTCATCTTGTTTTTTTATA
TAAAGGTGGTGGGACCCATGCAAAAGGGATGACTTATAAATGTTAAGTTGGGATGAAGCAACTTATGACTTATGGTCTGT
TTGGTTCCAATAAGTCACCTGACTTATAAGTCAGGTGACTTAGAATCAATGACTTATAAGTCACGCCTGTACGGTTGTCA
TCTGACTTATAAGTCACCTGACCACACCTTCCCACCTTGTTTTTCAATGTAAAGGTGATGGAACCCACGTAAAAGGGGGT
GACTTATAAGTTTTAAGTTAGGGTGAAGCAACTTATGACTTATAAGTTGGGGTGACTTATAAGTTGGGTCCGTTTGGCAA
AATAAGTCATTTTTTGCACTTTTCGACTTATAAGTTGGTGACTTATTTAAAACCAAATAGGGCCTTATAAGTTGAGGTAA
CTTATAAGTTGAGTCTGTTTGGTAAAATAAGTCACTTTTTTCATTTTTTGACTTATAAGTTGGTGACTTATTTGGAACCA
AACAGGTCCTAAACTAC-ATGAATATCCGTCCTAAAATAAGACATA-GGGCAGTTGGTGGAATGTTATTGTTCGATGCCA
CTGTGCTCGGTTTGCTTATAGTTTGCCTATGCAGGAATAAGATATATATGCTCTTGGGAAGTACATGTTTGGTTGATAAT
TGAAACATCCATGAGTTCTTTTGGTCATAAATAACACTTGTTTCGATGCTTGCCGACACTTTGAAGGCTTCCCTACTGTT
CCGGGGCTATGCATTGGGTAAATAAGAAATTATTTGGCGCCTTAAGCATCAATTTTTTTTAAGCTCCTTAAGCATCAAAT
AGGACATTCCACGAATACACAGTGAGTTTCTTAAAGGCTGTTATGGTGTGGCCAATGGGCTTTTCTCTTGGCCCACCGAA
CATTTATTCTCCGGCTCTGTCATCTCCGGCCATGATAACATGTGTGGCATGTCACCTCCACACATGCACCTGGGAGCGGA
TCTGCATCTAGCTTGGTTCACGTGCACACCTCTGTGTATTGAAAGATTCGGTGCCTATTGTAAGCCTGAGACGGTTGTGT
TTTTTAGCTGCTTGC-TGCCTCGTAGGCTGACTATCAGACAGAAGTCGGCTCTGTAGCA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr3B_634
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CAC
TAGCG-TTTGTTGGGCCGTGGCCTCGTCGTCGTCTGCGGCCGAGAAAGCTCGCGCTGCCAGGTGCGGAAGGAGACGAGGC
GATTTTGAAATTTGGGCGTCCCGTTCTGCCGTTGCTGGTCATCATCACCATCGTCTCATATTCCAAGATGCTCTTGACCA
AAATGCTTTCACACGGTGAGA--TTGAGAAAAAGAAAAAAGTCTCGTGCCACGGCGGCGACGTGTGCTAGAAAACTACTG
TAGAAACGAAGCAACCAGCAGTCTTCTTTCTATTCCAAAAGACAAAGGCAAAATGACATCCACTTTGACGAGCTGAGAGG
AATTCCTAGCAC-------TATATATACACGTACCAAC--CATACCCATCTTCCAGATCACGAACAAGGAAGCAAGATGA
CTGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGCCCGTTCGTCCACCGTGCGGAGGTGGCCCTGCGCCTCAAGGGAGTC
GCCTACACGCTCATCACGGAAGACCTCTCCAACAAGAGCGAGCTGCTGCTCCGCCACAACCCCGTCCACCACAGGGTGCC
GGTGCTCCTCCACGGCGACAAGGCCATCTGCGAGTCGCTGGTCATCCTCGAGTACATCGACGAGGCCTTTGACGGCCCGC
CGCTCCTTCCAACCGACCCCGGCGAGAGGGCCGAGGCCCGCTTCTGGGCCAAGTTCTTTGCGGAAAAGGT----TAGTAT
GCATGCCTGAATAT------TATTCTTTACAACTCAATTTCGTTGTTGCAAAAAGTAGGATTCACCAACAAATTCGTAAT
AT-------ATTCTCATTATGCCGT--GTGTGCGTGAATTGTTTGATCA-------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTGCCTGATGTCGGT
GTGGCTGGCGCTGTGGACGGAGGGCGAGACACAGAAAGTTCTCATGGAGGATGCTAAGGAATACCTGACGATTGTGGAGA
TGCAGCTGAAGGGGAAGAGATTCTTCGGAGGCGCTGCCATCGGCCTCGCCGACATCGCCGGCGCGAGCGTGCTGTCCCAC
TGGGCAGGCGTGCTGCAAGAGGTCGCTGGGATAACTGTCATGAGCGATGACGAGTATCCTGCTATCCACCGGTGGATGGA
GGACTACAACGCTGACGAAGTTGTCACGGAGTGCCTGCCGGATCGGGACCAGCTTGTGACCCACTTCACCGCTATCAGAG
GAAAGTGCGTTGCCGCGGCCAAGTCCATGTTACCCAATTATCTAGCCACCAAATAGACCTAAGC--------TAGTGGTT
AGCATGACCCACGTGGGTTG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TATTAC-ATGAATATCTGTCGTAAAATAAGACATAGGGGCAGTTGGTGGAATGTTATTGTTCGATCAAA
TTGTGCTCGGTTTGCTTA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>SNPs
---------------------S----------------S-----------------------------------------
-----S-S-------------S----------------------S---------------SSSSS--------S------
----S----S----------------S--S--S----------------------------S---S--S--------SS-
----------S--S-----S----------------SS-SS-----S----S----S-----------------S-----
--S----S-SSSSS-------------------S--S-S------S----S---SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----
------------S------------------------------------------------------------S------
-------------------------------------S--------------S-----S---------------------
--------------------------------------------------------------------------------
----------S-----S------S-S-------S-S-------------------------S------------------
----------------------------SSS---S------------------------------------SSSS-----
--------------SSSSS--------S----------SS---------------------SS---------S-------
--------------------------------------------------------------------------------
--S---S----------S---------------------------------S----------------------------
----------------------------------------------------------S--S-----S---S--------
--------------------------------S----------------------------S------------------
-------S---------------------S-----------S-SS--------S---------------------S----
----------S--------------SS-------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---
---------S----------S----S------------------------------------------------------
-----------S------------------------------------S------S------------------------
--------------------------S-----------------S-----------------------------------
---------------------------SS---------S----S--------S---------------S--S--------
--------------------S-------------------------S----------------------------S----
-----SS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------SS--------------------------------------------------------------
---------------S---SSSSSSSSSSSS-SSS-SS------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S-S-S--S----------S-------------S-S-----SS--S------------------------------S
----SSSS-SSSSSSS----------S-------------SS-S---------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_495
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTGGC
TTGCTCTTAGGGTGG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>reverse_1615
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TAATTTGAAGGCCCGTCGCT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>forward_1592
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CGCCTTCACAAATAGCCAGC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>reverse_3644
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGCTAGCTTCGTGCCAACTT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
