>input_sequence_62574
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------------------------------------------------------------------ATGGCCAGCAAGTG
GGTCAGGCCCGAGGTGAGCTCCACGCCCAGATCCGGGCCATCCACCCCACCCCCTCACTCGCTCTTCTTCCGTTCGCTTA
T-TATCCTGTCTCGCGGCCGCGCAGGTGTACCCGCTGTTCGCGGCGACGGGCGTGGCCATCGGCATCTGCGCCTTCAGCC
TCCTCCGCAACATCACCGGCAACCCAGAAGTCAGGTAAAGATCTCGATTGCTGT--------CAGTACCCCCTCCTACCC
TTGGCAGTTTATTTCTTGATTGAGTGAAACGAATCGGCCCCCCTCCTTCGCTTGTTTGATTATTAC------ATGGCTTG
GCGTTGTACCACTTATTAGTGGACTAGATAAGAGTAGATCCGCTGGATTTTGGCCTGTTCGTGGTGCCTGGCCGCTGGGT
G-TTGAGTGTTGACTTCGCTGCTACGGTCGATATCCATGTTTTGTCAGGTGAAA-AAAAAGTTGTGGTCTTGGTTTCATT
TGGGTGGGAGAATCGGTCCACGAAGGGTGAGAA-GAGAACCATTTGGCCTTTTGGGGGAGATATCTTGCTTGTGCGCGTG
GATTGTTGGTGAAGTTATGCGGGATTTTGCAGTATA--ATTTTCTATTCTGAGTATGATATTGTACCAATCATAGCTCGT
ACAGACAGGAAGTCATGTGTGTTATCCTGTGGGTTCTAATGGATAATGAAATATTGTACTAGTACATGATCTACTTTTTG
TACTCGCAATTGTTTAGTGCACTT-GCATGATCGGGAGACGATCTTAACAAACCTTATCTGCATTGATGATTATTTTAAT
AAATTTGTGGCAGCTCATCTTAATCTTGTTAGAGGAGAGCCTGAAAAAACCTATACTTCTTAGTAACAATGTACTGAAAT
GATTTCATCTGCAGGGTCAACAAGATGGGGAGGGCAGCAGGAGTGCTTGAGAACCATGAGGAGGGCAGGCGCTACGCCGA
GCACGGTCTCAGAGCCTATGTGCAGGACAAGACCCCCGAGATCATGCCAGGAATCAACAAGTTCTTCACCAGCCCGAAAT
GA------------------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G199700
GTCACCCCCGACACATTAGAGCTTT--CCCTTTCCCTGGTCGGACCCTCACAATTTCCGCATCGAGGAGGAAAATCCTTT
TAAAGAAAAAGACCTCGAACCATGCGCCGTGGAGGACAAATTTCATCATTCAGTCTATTTCAACCATTGCAAGCCTACAT
TGCGATATGTAAGAAGTTTTCCAATTAGTCACATGCATCTACTCATTTAGATTCCGCCAACCTCCTAAACATTGTCCATC
GCCCTATTGTTGTCGTCGGCCATGCGCACCATAATCCGTGTCATCTGCCATCCATGGATGTGAACCAAGAATTGGCAACT
CGGCAATCAATGTTTGTCACCCATTTGCTTTGCATGTTTTTTCTTTACCCCGAA-------------CGTTTTACGGTAA
TTTTGCTTTGCGTGCTCGCTAAGAAACGTGTGCTAGCTATAGTATGTGGTTGAGATTTGCTCTAGAGCAAAACATGAATG
TTGTGTTAGGATTTGTTTCTTCCGTTGCAGCACACAGATCCATTTGCTAGTAATTGGTAAGGTGACTCGCACGGTATTTC
TTAACTTGGCTTCACTTAATCTCCCATAGTTCTTCCCCCACACTACACAATCAAGTGAGCCCAAACGATTAATCAGCTCT
CGTGCTCCGACC-AAAATATTCGCCAGTACGGCCGAGTATATCCATCTATCTACTCAACTACTTTTCGTAAGCTAATTGG
CCTAAGAGAGTAATCTT------TTTCCTTAAAAAACACTCACCTGCACGTATGCGATCATATCCACTTGGCTCTACG--
AAAGCCGGGTGCAACTGGCAGAAAACCAGGTGGAAACGCGAGGGCAGGCCCGTCATTTCAGCCAAGCAAGTCCCAGCGAC
TGAGCAACCACACCCGCACAATAAAGCCGGCTCACGCACTCCGCCCACTCCCTCTCACCCGCAACCGCCGTCGCCTCTCC
ACTTTCGTCTC--TCTCACTCACTCTCCCCCTCCGCCGCCGGCGCAGCGTCCTCCCCGCGACTCCGATGGCCAGCAAGTG
GGTCAGGCCCGAGGTGAGCTCCACGCCCAGATCCGGGCCATCCACCCCACCCCCTCACTCGCTCTTCTTCCGTTCGCTTA
T-TATCCTGTCTCGCGGCCGCGCAGGTGTACCCGCTGTTCGCGGCGACGGGCGTGGCCATCGGCATCTGCGCCTTCAGCC
TCCTCCGCAACATCACCGGCAACCCAGAAGTCAGGTAAAGATCTCGATTGCTGT--------CAGTACCCCCTCCTACCC
TTGGCAGTTTATTTCTTGATTGAGTGAAACGAATCGGCCCCCCTCCTTCGCTTGTTTGATTATTAC------ATGGCTTG
GCGTTGTACCACTTATTAGTGGACTAGATAAGAGTAGATCCGCTGGATTTTGGCCTGTTCGTGGTGCCTGGCCGCTGGGT
G-TTGAGTGTTGACTTCGCTGCTACGGTCGATATCCATGTTTTGTCAGGTGAAA-AAAAAGTTGTGGTCTTGGTTTCATT
TGGGTGGGAGAATCGGTCCACGAAGGGTGAGAA-GAGAACCATTTGGCCTTTTGGGGGAGATATCTTGCTTGTGCGCGTG
GATTGTTGGTGAAGTTATGCGGGATTTTGCAGTATA--ATTTTCTATTCTGAGTATGATATTGTACCAATCATAGCTCGT
ACAGACAGGAAGTCATGTGTGTTATCCTGTGGGTTCTAATGGATAATGAAATATTGTACTAGTACATGATCTACTTTTTG
TACTCGCAATTGTTTAGTGCACTT-GCATGATCGGGAGACGATCTTAACAAACCTTATCTGCATTGATGATTATTTTAAT
AAATTTGTGGCAGCTCATCTTAATCTTGTTAGAGGAGAGCCTGAAAAAACCTATACTTCTTAGTAACAATGTACTGAAAT
GATTTCATCTGCAGGGTCAACAAGATGGGGAGGGCAGCAGGAGTGCTTGAGAACCATGAGGAGGGCAGGCGCTACGCCGA
GCACGGTCTCAGAGCCTATGTGCAGGACAAGACCCCCGAGATCATGCCAGGAATCAACAAGTTCTTCACCAGCCCGAAAT
GAAGCACTTTAGTCTCTCTGTGACTCGCTATTAGCAACTGTTGTGGTCAAGTGCAAACCTATTTCAAGCATTCAGTAATG
TTGTCGCGTCCATAATTCAGAGGATATCATAAAGTACCTCTTATTGAAAGAACCATGTGATGTTTGATGGCTTGCTATAT
ATGTGATGGTTGATGGCTTCAAAATATCTGTTTCATTGAGATTGTGGATATTCCATGCTTCCGTTTAGTTGCTGTGTTGT
GGTTGTGGAGACCTCAGTGGTAGCTCGGCGATTACTGCAGACATTTGGATATTGCTATTGCTGGTATTTTGAAGTGTGTT
CCTGTCTTAACAGTAGCTTGGACACAACTCCTTTGGAATTTGTGAATTTTGTGAGCATGGATGTGCTGTGGTATTTGTAG
GTATGGAAAATGACT--CTTATAAGTCAATCCTGA---TACCACATTTTATCTAACAGCCCAGGTCTTGTTGTAGTACTC
AGATGCATTTTACATCAGTGATCAACATCTTTCTAGCTTATTCTGTTGAATTTGACTAGCATAGCCTGTCAAGGTTTTAA
TATCCAGGTGATGGTGAAAC-AAATTAACTCATCAAAGCTGACTGAAAAGAGCAGAAATTATAAATCAAACCAGGTGGCT
CTAATATGCTAGCCTCAGCTGTTGTCCCAGCCATCTCCTCTCTTATACAGCTGCAAAGTAACACTTTGCTGGAGACAACA
GATGTAACAAGACTGAAGATGAACCAAGTAGAACTCATGATGTAGACAAAAAAAAAAGCACACTTGCCAAAATAAAATGG
ACAGTCCAGTGTATCATTATTCTGTTTCTTTTTTGCATTGAGTAAATACATCGAGCAAAGGCGAAATGAGCCTTTGTG--
TTTATGACATCTTGTACAGGTCGAATCCTTTCTAGAGTCCTCAGCAGATGAGTTGATCTGCCTACAAGAACTGATTTACA
ACAGACCTGCCTAAACTAAACCATCCTTCATGAGGTTGATTCCCGTGTAA
>chr7A_1
GTCACCCCCGACACATTAGAGCTTTTTCCCTTTCCCTGGTTGGACCCTCACAATTTCCGCATCGAGGAGGAAAATCCATT
TAAAGAAAAAGACCTCGAACCATGCACCGTGGAGGGCAAATTTCATCATTCAGTCTATTTCAACCATTGCAAGCCTACAT
TGCGATATGTAAGAAGTTTTCCAATTAGTCGCATGCATCTACTCATTTAGA-----------------------TCCATC
GCCCTATTGTTGTTGTCGGCCGTGCGCACCATAATCCGTGTCATCTGCCATCCATGGATGTGAACCAAAAACTGGCAACT
CGGCAATCAACGTTTGTCGCCCATTTGCTTTGCATGTTTTTTCTGTACCCCAAAGCCGTAGAACCATCGTTCTACGGTAA
TTTTGCTTTGCATGCTCACTAAGGAACATGTGCTGGTAATAGTATGTGTTTAAGATTTGCTCTAGAACAAAGCATGGATG
TCGTGATAGGATTTGTTTCTCTCAATGCAGCACAAGGATCTGTGTGCTTGTAATTGCTAAGG----TCGCACGGCACTTC
TTAACTTGCCTTCACTTAATCTCTCATAGTTCTTCCTCCACGCCACACAATCA-GTGAGCCCAAATGATTGATCAGTTCT
TGTTCTCCGACC-AAAAAAT-----AATGGGAGCGAGTATATCCATCCACCCAA-CAGCTACTTTTCGTAAGCTAATTGG
GCTAAGAGAAAACTAGCTAATCCTTTCCTTAAAAAACACTCACCTGCACGTATCCGATCATATCCACTTGTCTCTACGCC
AAAGCCGGGTGCTACTGGCAGAAAACCAGGTGGAAACGCGAGGGCAGGCCCGTCATTTCAGCCAAGCAACTCCGAGCGAC
TGAGCAACCACACCCGCACAATAAAGCCGGCTCACGCACTCCGCCCACTCCCTCTCA------ACCGCCGTCGCGTCTCC
ACTTTCCTCTCCATCTCACTCACTCTCCCCCTCCGCCGCCGGCGCAGCGTCCTCCCCGCGACTCCGATGGCCAGCAAGTG
GGTCAGGCCCGAGGTAAGCTCCACGCCCAGATCCGGGCCATCCGCCCGCTCCTGCCACTCGCTCTTCTTCCGTTCGCTTA
TCTATCCTGTCTCGCGGCCGCGCAGGTGTACCCGCTGTTCGCGGCGACGGGCGTGGCCATCGGCATCTGCGCCTTTAGCC
TCCTTCGCAACATCACCGGCAACCCAGAAGTCAGGTAAAGATCTCGACTGCTTGCAGTCCCCCCCTCCTCCTAT----CC
CTGGCCGTTTATTTCTTGATTGAGAGAAACGAATCGG-CCCCCTCCCTCGCTTGTTTGATTATTAC---TACATGGCTTG
GCGTTGTACCGCTTATTAGTGGACAAGATAAGAGTAGATCTGCTGGATTATGGCCTGTTCGTGGTGGCTGGCCGCTGGGT
GTTTGAGTGTTGACTTCGCTGCTACGGTCGATATCCATGTTTTTTCAGGT----GAAAAATTTGTGGTCTTGGTTTCATT
TGGGTCGGAGAATCGGTCCACGAGGGGTGAGAA-GAGAACCATTTAGCCTTTTGGGGGAGATATCTTGCTTGTGCGCGTG
GATTGTTGGTGAAATTATGCGGGATTTCGCAGTATATGATTTTCTATTCTGAGTATGATATTGTACCAATCATAGCTCCT
GCAGACAGGAAGTCATGTGTGTTATCATGTGGGTTCTAATGGATAATGAAATATTGTACTAGTACATGATCTACTTTTTG
TACTAGCAATTGTTTAGTGCACTTCGCATGATCGGGAGACGATCTTAACAAACCTTATCTGCATTGATGGTTATCTTAAT
AAATTTGTGGCAGCTCATCTTAATCTTGTTAGAGAAGAGCCTGAAACAACCTATACTTCTTAGTAACGATGTACTGAAAT
TATTTCATCTGCAGGGTCAACAAGATGGGGAGGGCAGCGGGAGTGCTTGAGAACCATGAGGAGGGCAGGCGCTACGCCGA
GCACGGCCTCAGAGCTTATGTGCAGGACAAGACCCCCGAGATCATGCCAGGAATCAACAAGTTCTTCACCAGCCCAAAAT
GAAGCACTTTAGTCTGTCTGTGACTCGCTATTAGTAACTGTTGTGGTCAAGTGCAAACCTATTTCAAGCATTCAGTAATG
TTGTTGCGTCCATAATTCAGAGGACATCGTCAATTACCTCTTATTGAAAGAACCATGTGATGTTTGATGGCTTGCTATAT
ATGTGATGGTTGATGGCTTCTAAATATCTGCTTCATTGAGATTGTGGATATTCCATGCTTCCGTGTAGTTGCTGTGTTGT
GGTTGTGGAGACCTCAGTGGTAGCTCAGCGATTACTGCAGACATTTGGATATTGCTACTGCTGGTATTTTGAAGTGTGTT
CCTGTCTTAGCAGTATCTTTCACACAACTCCTTTGGAATTTGTCAATTCTGTGAGCATGTATGCGCTGTGGTATTTGTGG
GTATGGAAAATGACTGTCTTATAAGTCAATCCTGG---TACAACATTTTACCCAACAGCCAAGCTCTTGTTGTAGTACTT
AGATGCATTTTACATCAGTGATTAACATATTTCTAGCTTATTCTGTTGAAGTTGACTAGCATAGCCTGTTAAGGTTTTAA
GATCCAGGTGATGACATAACAAAATTAACTCATCAGAGCCGACTGAAAAGAACAGACATTATAGATCAAACCATGTGGTC
TTTATATGCTAGCCTCAGCTGTTGTCCCAGCCATCTCCTCTCT-ATACAGCTGCCAAATAACACTTTGCTGGAGAGAACA
GATGCAAAAAGACTGAAGATGAACTAAGTAGAC--------------------AAAAGTACACTGCCTAAAAAAAGATGG
ACAGTCAAGTGTATCATTATTCTGTTTCTTTTTTGCATTGAGTAAATACATCGAGCAAAGGCGAAATGAGCCTTTGTG--
TTTATGACATCTTGTACAGGTCGAATCCTTTCTAGAGTCCTCGGCAGATGAGGTGATCTGCCTACAAGAACTGATTTACA
ACAGACCTGCCTAAACTAAACCGTCCCTCGTGAGGTTTATTCCCGTGTAA
>chr7B_532
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------------------------------------------------------------------TCGCACGGTACCTC
TTAACATGCCTTCACTTAATCTCTCATAGTTCTCCCCCCACACTACACAATCA-GTGAGCCCAAATGATTGCTAAGTTCT
AGTGCTCCGACCAAAAATATTCGCCAATGGGGGCGAGTATATCCATCGACCCAA-CAACTACTTTTCGTAAGCTAATTGG
-CTACGAGAAAACTAGCTAATCCTTTCCTTAAAAAAACCTCACCTGCACGTATGCGATCCTATGCACTTGTCTCTACGCC
GAAGCCGGGTGCTACTGGCAGAAAACCAGGTGGAAACCCGAGGGCAGGCCCGTCATTTCAGCCAAGCAAGCCCGAGCGAC
TGAGCAACCACACCCGCACAATAAAGCCGGCTCACGCACTCCGCCCACTCCCTCTCACCCGCAACCGCCGTCGCCTCTCC
ACTTTCGTCTC--TCTCACTCACTCTCCCCCTCCGCCGCCGGCGCAGCGTCCTCCCCGCGACTCCGATGGCCAGCAAGTG
GGTCAGGCCCGAGGTGAGCTCCACACCCAGATCCGGGCCATCCACCCGCTCCTACCACTTCCCCTTCTTCCGTTCGCTTA
T-TATCCTGTCTCGCGGCCGCGCAGGTGTACCCGCTGTTCGCGGCGACGGGCGTCGCCATCGGCATCTGCGCCTTCAGCC
TCCTCCGCAACATCACCGGCAACCCAGAAGTCAGGTAAAGATCTCGACTGCAGT--------CCCCCCTCTTAT----CC
TTGGCCGTTTATTTCTTGATTGAGAGAAACGAATCGG-CCCCCTCCCTCGCTTGTTTGATTATTACTAGTACATGGCTTG
GCGTTGTACGGCTTATTAGTGGACTAGGAAAGAGTAGATCCGCTAGATTATGGCCTGTTCGTGGTGGCTGGCCGCTGGGT
GTTT-AGTGTTGACTTCGCTGCTACGGTCGATATCCATGTTTTTTCAGGTGAAAGAAAAAGTTGTGGTCTTGGTTCCATT
TGGGTGGGAGAATCAGCCCACGAGGACGAGGGGTGAGAACCGTTTGGCCTTTTGGGGAAGCTAT-TTGCTTGTGCGCGTG
GATTGTTGGTGAAATTATGCGGGATTTCGCAGTATA--ATTTTGTATTCTGAGTATGATATTGTACCAATCATAGCTCGT
ACAGACAGGAAGTCATGTGTGTTATCCTGTGGGTTCTAATGGATAATGAAATATTGTACTAGTACATGATCTACTTTTTG
TACTAGCAATTGTTTAGTGCACTT-GCATGATTGGGAGACGATCTTAATAAACAGTATCTACATTGATGGTTATTTTAAT
TCA----TGGCAGCTTATCTTAATCTTGTTAGAGAAAAGCCTGAAACAACCTATACTTCTTAGTAACAATATACTGAAAT
GATTTCATCTGCAGGGTCAACAAGATGGGGAGGGCAGCGGGAGTGCTTGAGAACCATGAGGAGGGCAGGCGCTACGCCGA
GCATGGCCTCAGAGCCTATGTGCAGGACAAGACCCCCGAGATCATGCCAGGAATCAACAAGTTCTTCACCAGCCCGAAAT
GAAGCACTTTAGCCTGTCAGTGGCTCGCTATTAGTAACTGTTGTGGTCAAGTGCAAACCTATTTCAAGCATTCAGTAATG
TTGTCGCGTCCATAATTCAGAGGATATCATCAAGTGCCTCTTATTGAAAGAACCATGTGATGTTTGATGGCTTGCTATAT
ATGTGATGGTTGATGGCTTCTAAATATCTGTTTCATTGAAATTGTGGATATTCCATGCTTCCATTTAGTTGATGTGTT--
---------------------------GCGATTACTGCAGACATTTGGATATTGCTACTGCTGGTATTTTGAAGTGTGTT
CCTGTCTTAACAGTAGCTTGGACACAACTCATTTGGAATTTGTGAATTTTG---GCATGTATGTGCTGTGGTATTTGTGG
GTATGGAAAATGACT--CCTATAAGTCAATCCTGGTACTACCACATTTTATCTAACAGCCCAGATCTTGTTGTAGTACTC
AGATGCATTTTACATCAGTGATCAACATCTTTCTAGCTTATTCTGTTGAATTTGATTAGCATAGCCTGTCAAGGTTTTAA
TATCCAGGTGATGGTGAAAC-AAC-TAACTCATCAAAGCTGACTGAAAAGAGCAGAAATTATAAATCAAACCAGGTGGCT
CTAATATGCTAGCCTCAGCTGTTGTCTCAACCATCTCCTCTCTTATACAGCTGCGAAGTAACACTTTGCTGGAGACAACA
GATGTAACAAGACTGAAGATGAACCAAGTAGAACTCATGATGTAGACAAAAAA----GCACACTTGCCAAAAAACAATGG
ACAGTCAAGTGTATCATTATTCTGTTTCTTTTTTGCATTGAGTAAATACATCGAGCAAAGGCGAAATGAGCCTTTGTGCT
TTTATGACATCTTGTACAGGTCGAATCCTTTCTAGGGTCCTCGGCAGATGAGTTGATCTGCCTACAAGAACTGATTTACA
ACAGACCTGCCTAAACTAAACCATCCTTCATGAGGTCGAATCCCGTGTAA
>SNPs
----------------------------------------S------------------------------------S--
-------------------------S---------S--------------------------------------------
------------------------------S--------------------SSSSSSSSSSSSSSSSSSSSSSS------
-------------S-------S----------------------------------------------S--S--------
----------S-------S-------------------------S------S-------------------S--------
-----------S-----S-----S---S------S-SS----------S--S--------------S----S----S---
-S---S--------------SS-SS---------SS----SS-S----S-------S-----SSSS----------S---
--------S--------------S-----------------------------S-----------S----S-----S---
S-------------------------S-SS--S--------------S-S-S-SS-------------------------
S--------SS-S-SSS-----------------------------------------------------S---------
------------S------------------------------------------------------------S------
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-----------------------------------------------SSS--SSS-------------------------
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-----------------------------------------------S---------------SS-S-S--SSSSSSS--
-----S------------------S------------S--------S---------------------------------
----------S--------------------------------------S----------------S-------------
-------------------------------------------S------------------------------------
-----------------------S--------------------------------------------------------
-------------S-------------S----------------------------------------------------
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----S----------------------------------------------------------------S----------
----------------------------------S-----------S---------------------------------
--------------------------------------S-----------------------------------------
------S-------------------------------------------------------------------------
---------------S------------------S---------------------------------------------
------------------------------S-------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------S------------------------------S----------------------
-----------------------------------------------------------S------------------S-
----------------------------------S----------------------------S----------------
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------------------------------------------------------S-------------------------
------------------------------------------------------------------------S-------
------S-------------------------------------------------------------------------
------------------------------------------S-------------------------------------
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>forward_515
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---------------TTTCTTCCGTTGCAGCACAC---------------------------------------------
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>reverse_2007
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------TCTCAGAGCCTATGTGCAGG------------------------------------------------------
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>forward_1277
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---------------------------------------------------------GCTGTCAGTACCCCCTCCTA---
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>reverse_2115
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----------------------------------CAACTGTTGTGGTCAAGTGCA-------------------------
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