>input_sequence_62572
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-------------------------------------------ATGGACGGCTTTAGTTCCCCCGCCATGGCACCCACAT
TCCGCAAACCAGCGTCCCACCCGGCCGTCCTCGTCCTCCGCCGGCTGGACGCGCCGTTCGCCGCCGCGCTGCGCGAGCAC
TTCCTCCTCCTGGACTTCCACGCGTCCGGCGAGCCCCTCCCGGCTTTTCTAGCCGCGGCAGCGGCAGACCCCGAGCCCCC
GCACGCCGTGCTGGTGGTGGGCGGCGGAGCCATACGCGTGGACGCCCCGTTCCTCGACGCCGTCCCGTCCGTCCGGTGTG
TGGTCACCACGGGCACCGGCGTCGACCACATCGACCTGGCCGAGTGCGCGCGCCGCGGCGTGGCCGTCGCCAACGCCGGG
AAGGTCTACTCCACCGACGTGGCGGACCATGCCGTGGGCCTGCTGCTCGACGTGCAGCGGCGCGTGTCGGCGGCGGAGCG
GTACGTCCGGCGCGGGTCCTGGCCGGCCCAGGGCGACTACCGGCCACTCGGGTCCAAGCTCGGCGGCAAGCGCGTCGGCA
TCATCGGCCTGGGCAACATCGGCTCGCTCGTCGCGAGGAGGCTCGAAGCCTTCGGCTGCGTCATCCTCTACAACTCGAGG
CGGCGCAAGGAGGATGGCGCGGCCCGCCGCTACACCTACTTCCCGGACGTCCGAGGCCTCGCCGCCGCCTCCGACGTGCT
CGTCGTTGCCTGCGCGCTGAACGAGGAGACGAGGCACGTCGTGGGCAGGGAGGTGCTGGAGGCCCTGGGGAAGGACGGCG
TGCTCGTCAACGTCGGCCGAGGGGCGAACGTCGACGAGGCGGCGCTGGTGGCGGCGCTCAAGGAGGGGAGGATCGCCGGC
GCCGGCCTCGACGCCTTCGAGGACGAGCCCAAGGTGCCGGCGGAGCTCCTGCCCATGGACAACGTGGTGCTGACCCCTCA
CGCGGCGGTTCTGACGCACGAGTCCAGGTCGGACCTGCGCGCGCAGACCATCGGCAACCTCCAGGCCTTCTTCTCCGGCC
TGCCATTGCTCACTCCCGTGCCCTGCCATCGTGCCTAA------------------------------------------
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>chr7B_1_TraesCS7B01G456600
ATACCATGCCAATGAATTAGTACTACCCCAACTACCACCATTTCCCTCTCATTAGAATGCACTGTAAAAGTCGTGAAATG
CGAGAAGCCATATCCACACTTTTTAGTCCTTTTATCACGCCAAATACTACACGCGTTCATACATTTGAGTCTTTAACAAT
ACTAAATAGGACACACACGTATTTTTTTAGTAGGTTTATCACACGCAATGGAAGGGCTTCATCTTTAGTGTGTTGAAAGT
GCAAATTAACTATTTTTAAATGGTGCAAAGTGGAACAATCTCTTAACTTAAACATGCATGAAAACAAAATGACAGCATGT
GATAAAGACACGGTTCAAACAAAAATTTAGTCCCTACACAAAGTAAAGTCGTGTGTTATAGTCACCGACACTTCTACGGA
GTAACATGTATGCATGGCATTTGCTGTCCACACAATGTGCAATCATGACGCTGGGCCACAAGTTAATTTACCGACAAAAG
TTTCCTTGCATGGAATGGTATCTTGTAAGTTTTTTACAAAAGAAGTGTAAATAATAGGCACTCGCATCCCGGAATATGTC
TTTGGTGACCGAGCTCACTGGAGGTC-CCAAATTCAAATTTCAAATTTTATCAAAATTCATATTTCTACATTTCAAAAAA
ATCTGAAAAAA-GTACAGATATGCATGAAGGCATAACACACATGTGCGTAATTTTTTAGGGCAAATTACGTTGAAATGAG
GGTTGTGCAAAAAAGACAAATCTTGTGTTGTTTAACACATGCATGATACTATTCATCCTTATAGATCATGAATTTGTCTT
TTTTATACAAATCGTATTTCAACGTATTTCATCATGAAATTTTACACACATATGGTTACGTTCTTACATACACACATA-T
TTTTCAGAATTTTTTGAAACATAAAAGTTTGAATTTAAATTTTTCAATAATAAAGGCCTCCATGAAGCTCCGCCTCCAAA
ACGCCATTCTCCTCGCATCCAACATATACAAGCTAGGGACAGCATGGACGGCTTTAGTTCCCCCGCCATGGCACCCACAT
TCCGCAAACCAGCGTCCCACCCGGCCGTCCTCGTCCTCCGCCGGCTGGACGCGCCGTTCGCCGCCGCGCTGCGCGAGCAC
TTCCTCCTCCTGGACTTCCACGCGTCCGGCGAGCCCCTCCCGGCTTTTCTAGCCGCGGCAGCGGCAGACCCCGAGCCCCC
GCACGCCGTGCTGGTGGTGGGCGGCGGAGCCATACGCGTGGACGCCCCGTTCCTCGACGCCGTCCCGTCCGTCCGGTGTG
TGGTCACCACGGGCACCGGCGTCGACCACATCGACCTGGCCGAGTGCGCGCGCCGCGGCGTGGCCGTCGCCAACGCCGGG
AAGGTCTACTCCACCGACGTGGCGGACCATGCCGTGGGCCTGCTGCTCGACGTGCAGCGGCGCGTGTCGGCGGCGGAGCG
GTACGTCCGGCGCGGGTCCTGGCCGGCCCAGGGCGACTACCGGCCACTCGGGTCCAAGCTCGGCGGCAAGCGCGTCGGCA
TCATCGGCCTGGGCAACATCGGCTCGCTCGTCGCGAGGAGGCTCGAAGCCTTCGGCTGCGTCATCCTCTACAACTCGAGG
CGGCGCAAGGAGGATGGCGCGGCCCGCCGCTACACCTACTTCCCGGACGTCCGAGGCCTCGCCGCCGCCTCCGACGTGCT
CGTCGTTGCCTGCGCGCTGAACGAGGAGACGAGGCACGTCGTGGGCAGGGAGGTGCTGGAGGCCCTGGGGAAGGACGGCG
TGCTCGTCAACGTCGGCCGAGGGGCGAACGTCGACGAGGCGGCGCTGGTGGCGGCGCTCAAGGAGGGGAGGATCGCCGGC
GCCGGCCTCGACGCCTTCGAGGACGAGCCCAAGGTGCCGGCGGAGCTCCTGCCCATGGACAACGTGGTGCTGACCCCTCA
CGCGGCGGTTCTGACGCACGAGTCCAGGTCGGACCTGCGCGCGCAGACCATCGGCAACCTCCAGGCCTTCTTCTCCGGCC
TGCCATTGCTCACTCCCGTGCCCTGCCATCGTGCCTAATATTTTC--ATA-----------------GCTTGCAGATTTT
CATAACCAGA------------TGAAAAACGTGGCAAAAAAAACAAAATCGATTATCCAAATTGTTATTTTCAAACGCAA
TTTGGAGCATCAGTTTTTC-TT-TTGCCACTTTTTCCATCA---------------------------------------
-----------ATGTTTCACACGCAAAAAAACCCAGACATCTAGATCTGCATC---------------------------
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---------AGCTTGTTGTGGTTG-ACGACATGTATAACGGACGTCATGCGTAGCCCGGCTTGGTGGATGTCTGTGATGG
CGCACGACGGTTGCAAAGTGTAGAAACATCCATGGCGTCCCCTGGGCCGATGGATGTGGGTAGGGCTCTCTCTGATGAGG
TGGCGGTCAATTGTGGTATGCTCCACCGTCAGTGCTGGTTCGT---GTAGGACTAAAGCGGCACCCTTGTTGCGGATTAC
TGTGATCACTGAAAGGTCTTTGCTGATGGTTCCTCCCTCCAGATGCAAGCAGAAGGCTCCATTTATGGATTTTGGTGACT
CTCACTCCAGTTAGTTTGCATTCGGAGGTGAATTCAATCTATGAACGATGGCTTGACGCGGAGGGAATAGTTGGC-----
---------------CTAGCCCAGCGCATGTAGCTGCTGGGATCGCAAAAAAGTGGTGGCCACAACACATGTTGACTTCG
AGTGGTGCTTCTCGAGTACCTGGTTTCGAGCTCGGGCCCGCTCGTTCCCACATGATTCGTGCAGTTGGAATACATAGAGC
CCGTATAATCAATTCCATCCCATCGTACACAAGTTGTATAGCATACGTATTACCTCTGACCACGCCATCAGATGGCCCAC
AAGGCAACCTTATGCAATGAAATGAGACGCGCAATGAGTATATGTCAGCCCGAACAACTATCTCCATCTCGCTACCCGGC
CCGCAGTCTTTTTAGACGTCCGGCTTGTTTGTTTCTTTTACTCAGCTATTCTTCTCCGTGCTCACTCTCCATTCCGATCG
TTGAAAAGAAAATGTCAATACCTCGCAGTTTCACCATAGTTCACAACCATGTGTTCATCCA
>chr7A_1
ATACAATGCCAATGAATAAGTATTGCCCGAACTACCACCATTTCCCTCTCATTAGAATGCATTGTAAAAGTCGTGAAATG
CGAGAAGCCATATCCACACTTTTGAGTCCTTTTATCACGCCAAATACTACACGCGTTCATACATTTGAGTCTTTAACCAT
ACTAAATAGGACACACACGTATTT-TTTAGTAGGTTTATCACACACAATGGAAGGGCTTCATCTTTAGTGTGTTGAAAGT
GCAAATTAACTATTTTTAAATGGTGCAAAGTGGAACAATCTCCTAACTTAAACGTGCATGAAAACAAAATGACAGCATGT
GATAAAGATACGGTTCATACTAAAATTTAGTCCCTACACAAAGTAAAGTCGTGTGTTATAGCCACCGACACTTCTACAGA
GTAACATGTAGGCATGGCATTTGCTGTCCCCACAATGTGCAATCATGACGCTGGGCCACAAGTTAATTTACCGACAAAAG
TTTCCTTGCATGGAATGGTATCTTGTAAGTTTTTTACAAAAGAAGTGTAAATAATAGGCACTCGCATCCCCGAAAATGTC
TTTGGTGACCGAGCTCACTGGAGGTCACCAAATTCAAATTTCAAATTTTATCAAAATTCATATTTTTACATTTCAAAAAA
ATCTGAAAAAAAGTACAGATATACATGAAGGCATAACACACATGTGCGTAAATTTTTATGGCAAAATACTTT-----GAG
GGCTGTGCAAAAAAGATAAATCTGATGATGTTTAACA----CATGATACTATTCATCCTCATAGACCATGAATTTGTCTT
TTTTATGCAGGTCGTATTTCAACGTATTTCATCATAAAATTTTACACACATATGGTTACGTCCTTACATACACGCATATT
TTTTCAGAATTTTTTGAAACATAAAAGTTTGAATTTGAATTTTTCAAAAATAAAGGCCTCCA----------------AA
ACGCCATTCTCCTCGCATCCAACATATACAAGCTAGGGACAGCATGGACGGCTTTAGTTCCCCCGCCATGGCACCCACAG
TCCGCAAACCAGCGGCCCACCCGGCCGTCCTCGTCCTCCGCCGGCTGGACGCGCCGTTCGCCGCCGCGCTGCACGAGCAC
TTCCTCCTCCTGGACTTCCACGCGTCCGGCGAGCCCCTCCCGGCTTTTCTAGCCGCGGCAGCGGCAGCCCCCGAGCCCCC
GCGCGCCGTGCTGGTGGTGGGCGGCGGAGCCATACGCGTGGACGCCCCGTTCCTCGACGTCGTCCAGTCCGTCCGGTGCG
TTGTCACCACGGGCACCGGCGTCGACCACATCGACCTGGCCGAGTGCGCGCGCCGCGGCGTGGCCGTCGCCAACGCCGGG
AAGGTCTACTCCACCGACGTGGCGGACCACGCCGTGGGCCTGCTGCTCGACGTGCAGCGGCGCGTGTCGGCGGCGGAGCG
GTACGTCAGGCGCGGGTCCTGGCCGGCCCAGGGCGACTACCGGCCACTCGGCTCCAAGCTCGGCGGCAAGCGCGTCGGCA
TCATCGGCCTGGGCAACATCGGCTCGCTCGTCGCGAGGCGGCTCGAAGCCTTCGGCTGCGTCATCCTGTACAACTCGAGG
AGGCGCAAGGAGGAGGGCTCGTCCCGCCGCTACACCTACTTCCCGGACGTCCGGGGCCTCGCCGCCGCGTCCGACGTGCT
CGTCGTTGCCTGCGCGCTGAACGAGGAGACGAGGCACGTCGTGGGCAGGAAGGTGCTGGATGCCCTGGGGAAGGACGGCG
TGCTCATCAACGTCGGCCGAGGGGCGAATGTCGACGAGGCGGCGCTGGTGGCGGCGCTCAAGGAGGGGAGGATCGCCGGC
GCCGGCCTCGACGTCTTCGAGGACGAGCCGAAGGTGCCGGCGGAGCTCCTGCCCATGGACAATGTGGTGCTGACCCCTCA
CGTGGCGGTTCTGACGCAGGAATCCAGGTCGGACCTGCGCGCGCAGACCATCGGCAACCTCCAGGCCTTCTTCTCCGGCC
AGCCATTGCTCACTCCCGTGCCCTGCCATCGTGCCTAATGTTTTGATATA-----------------ACTTGCAAATTTT
CATAATAACCAGATGACATTCGTGGAAAACGTGACAAAAAAAG---AATCGATGATCTAAAATGTTATTTTCAAACGCAT
TTTGGAGCATCGATTTTTCTTTTTTGCCATGTTTTCCATCAATGTCATCTCATGATGAAATTGTGCAAGC----TATCTG
GACATTTGTCAATGCTTCATA---AAAAAAAGTCAGACGTCTAGATCTGCATCTCGATCTGGTGCACCTGTACAGTGGTG
TGGCCCCGAAACGGCTCATTGGCAGATTGGGCCAAGCCGTG--TGTGGTGTCGGTGGCAACTGTATGCGACGGG------
-TTCTGCTCAGCATGTTGTGGCTGTACGACATGCATAACGGGCGTCACGCGTAGCCGGGCTTGGTGGATGTCTGTGATGG
CGCACGACGGTTGCAAGGTGTAGATCCATCCATGGCGTCCCCCGGGCCGATGAACCTGGGTAGGGCTATCTCCGATGGGG
TGGTAGTCAATTGTGGTGTGCTCCACCGTCAGTGCTGGTTCATGTAGTAGGACTAAAGTGTCACCCTCGCTGCGGATTAC
GATGATCACTGAAAGGTCTATGCTGATGGTTCCTCCCTCCAGATGCAAGCAGAAGGCTTC-TTTATGGATTTTGGTAACT
CCCACTCCAGTTAGTTTGCCTTCGGAAGTGAATTTGAGCTATGTACGATGGCTTGACGCGGAGGGAAAAGTTATCCAATG
A------TGTTATTTCTAGCCCAGCGCATGTAGCTGCTGGGGTCGTAGAAAAGTGGTGGCGACAACACATATTGACTTCG
AGTGGTGCTTCTCGA-TACCTGGTTTTGAGCTCCGGG-------------------------------------------
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>chr7D_1316
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--------------------------------------GCCGAGTGCGCGCGCCGCGGCGTGGCCGTCGCCAACGCCGGG
AAGGTCTACTCCACCGACGTGGCGGACCACGCCGTGGGCCTGCTGCTCGACGTGCAGCGGCGCGTGTCGGCGGCGGAGCG
GTACGTCCGGCGCGGGTCCTGGCCGGCCCAGGGCGACTACCGGCCACTCGGCTCCAAGCTCGGCGGCAAGCGCGTCGGCA
TCATCGGCCTGGGCAACATCGGCTCGCTCGTCGCGAGGAGGCTCGAAGCCTTCGGCTGCGTCATCCTGTACAACTCGAGG
AGGCGCAAGGAGGAGGGCTCGGCCCGCCGCTACACCTACTTCCCGGACGTCCGGGGCCTCGCCGCCGCGTCCGACGTGCT
CGTCGTTGCCTGCGCGCTGAACGAGGAGACGAGGCACGTCGTGGGCAGGGAGGTGCTGGAGGCCCTGGGGAAGGACGGCG
TGCTCATCAACGTCGGCCGAGGAGCGAACGTCGACGAGGCGGCGCTGGTGGCGGCGCTCAAGGAGGGGAGGATCGCCGGT
GCCGGCCTCGACGTCTTCGAGGACGAGCCGAAGGTGCCGGCGGAGCTCCTGCCCATGGACAATGTGGTGCTGACCCCTCA
CGTGGCGGTTCTGACGCAGGAGTCCAGGTCGGACCTGCGCGCGCAGACCATCGGCAACCTCCAGGCCTTCTTCTCCGGCC
AGCCATTGCTCACTCCCGTGCCCTGCCATCGTGCCTAGTGTTTTG--ATA-----------------ACTTGCAAATTTT
CATAATAACCAGATGACATTCGTGGAAAACGTGACAAAAAAAG---AATCGATGATCCAAAATGTTATTTTCAAACGCAT
TTTGGAGCATCGATTTTTC-TTTTTGCCATGTTTTCCATCAATGTCATCTCATGATGAAACTGTGCAAGC----TATGTG
AACATTTGTCAATGCTTCATA---AAAAAAAGTGAGACATCTAGATCTGCATCTGGATCTGGTGCACGCGTGCA------
--GCCCTGAAGCGGCTCACCCGCAGATTGGGCTAAGCCGTG--TGTGGTGCCGGTGGCAACTGTATGTGACGGG------
-TTCTGCTCAGCATGTTGTGGCTATACGACATGCATAACAGACATCACGCGTAGCCCGGCTTGGTGGATGTCTGTGATGG
CGCACGACGGTTGCAAGGTGTAGATCCATCCATGGCGTCCCCCGGGCCGATGGACCTGGGTAGGGCTCTCTCTGATGAGG
TGGCAGTCAATTGTGGTGTGCTCCACCAT--------GTTCAT---GTAGGACTAAAGTGTCACCCTCGCTGCGGATTAC
GATGATCACTGAAAGGTATGTGCTGATGGTTCCTCCCTCCAGATGCAAGCAGAAGGCTCC-TTTATGGATTTTGGTGACT
CTCGCTCCAGTTAGTTTGCCTTCGGAAGTGAATTCAATCTATGAATGATGGCTTGACGCGGAGGGAATAGTTGTCCAACG
ATGATGGTGTTATTTCTAGCCCGACGCATGTAGCTGCTGGGATCGCAAAAAAGTATTGGCGACAACACATGTTGACTTCG
AGTGGTGCTTCTCGAGTACCCGATTTCGAGCTCCGGG-------------------------------------------
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>chr7B_1674
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----------------------------------------------------------------------------TGCT
CGTCGTTGCCTGCGCGCTGAACGAGGAGACGAGGCGCGTCGTGGGCAGGGAGGTGCTGGAGGCCCTGGGGAAGGGCGGCG
TGCTCGTCAACGTCGGCCGAGGGGCGAACGTGGACGAGGCGGCGCTGGTGGCGGCGCTCAAGGAGGGGCGGATCGCCGGC
GCCGGCCTCGACGTCTTCGAGGACGAGCCGAAGGTGCCGGCGGAGCTCCTGTCCATGGACAACGTGGTGCTGACCCCTCA
CGCGGCGGTTCTGACGCAGGAGTCCAGGTCGGACCTGCGCGCGCAGACCATTGGCAACCTCCAGGCCTTCTTCTCCGGCC
GGCCATTGCTCACTCCCGTGCCCTGCCATCGTGCCTAATGTTTTCATAGCTTGCAAATGTTTTCATGGCTTGCAAATTTT
C---ATAACCAGATGACATTCGTGGAAAACGTGGCCAAAAAAACAAAATCGATGATCCAAAATGTTATTTTCAAACCCAA
TTTCGAGCATCAGTTTTTC-TTCTTGCAACGTTTTCCATCAATGTCATTTCATGATGAAATTGTGCAAGCGTGCTATGTG
AACATTTGTCAATGTTTCACACGCAGAAAAACCTAGACATCTGGATCTGCATCTGGATCTAGTGCACGCGTGCAGTGGTG
TGGCCCCGAAGCGGCTCACTGGCAGATTGAGCCAAGCCGTGGCTGTGGTGCTGGTGGCAGCTGCAGGCGACGGGTGATGG
GTTCTGCTCAGCTTGTTCTGGTTGTACGACATGGATAACGGACGTCACGCGTAGCCCGGCTTGGTGGATGTCTGTGATGG
TGCATGACGGCTGCAAGGTGTAGATCAATCCATGGCGTCCCCTGGGCCGATGAGCCTGGGTAGGGCTCTCTCTGATGAGG
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>SNPs
----S------------S----S-S---S--------------------------------S------------------
-----------------------S-----------------------------------------------------S--
------------------------S-------------------S-----------------------------------
------------------------------------------S----------S--------------------------
--------S--------S--S----------------------------------------S---------------S--
----------S------------------S--------------------------------------------------
----------------------------------------------------------------------S---S-----
-----------------------------------------------------------------S--------------
----------------------S----------------------------S------S------S---S--SSSSS---
--S-------------S------SS--S---------SSSS------------------S-----S--------------
------S--SS------------------------S-------------------------S-----------S------
------------------------------------S----------S--------------SSSSSSSSSSSSSSSS--
-------------------------------------------------------------------------------S
--------------S---------------------------------------------------------S-------
-------------------------------------------------------------------S------------
--S--------------------------------------------------------S-----S------------S-
-S------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
---------------------------------------------------S----------------------------
-------------------------------------------------------------------S------------
S-------------S---S----------------------------------S--------------S-----------
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-------------S---------------S--------------------------------------------------
------------------S-------------------------------------------------------------
S--------------------------------------S----------------------------------S-----
-----SS-SS--------------S----------------------------S-------S------------------
------------------------------S-------------------------------------------------
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---------------------------------S-------------S--------------------------------
----------------S-------SS----------------------------SS------------------------
----S------------S-----------------------S----------------S-S------S-S----------
SS-----------------S----------------------------------------S-------------------
-------------------S------S----------------------------------------------S------
------------------------------------------------------------S-------------------
---------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_951
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---------------------------------------------------AAAGGCCTCCATGAAGCTCC---------
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>reverse_2536
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-------------------------------------------------------GTGGGTAGGGCTCTCTCTGA-----
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