>input_sequence_62562
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-------------------------------------------------------------ATGGAGGGGGAGACGAACA
AGAGGCTGGCCACGCTGGTGGGCTGCAACTACGTGGGCACGCGCTACGAGCTCCGCGGCTGCATCAACGACGTCGACGCC
GTGCGGGCCGCCCTCGTCGCCCGCTTCGGCTTCGCGCCGGCCGACGTCGCCGTGCTCACCG------ACGGGCGCGGCGC
CGAGGTGCTCCCGACGGGGGCCAACATCCGGCGCGCGCTCGCGGAGATGGTCGCCCGCGCCGCCCCCGGGGACGTGCTCT
TCTTCCACTACAGCGGCCACGGCACGCTCGTCCCGCCGCGACACGGCGACGGCGGCGCGGAGGAGGAGGCGATCGTGCCG
ACCGACTTCAACCTCATCACGGACGTGGACTTCCGGCAGCTGGTGGACCGGGTGCCGCCGGGCGCGAGCTTCACCATTGT
GTCCGACTCGTGTCACAGCGGCGGCCTCATCGACCTGGAGAAGGAGCAGATCGGGCCCTCCGTCGGCTCCGGCCCCGGCG
CACCGCCTACGGCTACCGCGCGCACCGCCCGGTTCCTTCCCTACGGCGTGCTCCTCGACCACCTCTCGGCCGTCTCGGGC
ATGCCTTCCTCCCACCACGTCGCCGACCACCTCGTGGCGCTCTTCGGCGCCGATGCCAGCGCCAAGTTCCACGTTCACGG
CGGCAGCGGCAACGGCAGCACCCTGTCCACCACGCCCGCACCGGCGCCAACGCCGCCGCGCCCGGACGAGGGTATCCTGC
TGAGCGGGTGCCAGACGAACGAGACCTCCGCGGACGTGCCGGCGTACGAGGCCAGCGGAGGCAAGGCATGCGGGGCGTTC
AGCAGCGCGGTGCAGAGCGTGCTGGCGGCGCACCCGGCGCCGCTGAGCAACCGGGAGCTCGTGGAGAAGGCCAGGGCGGT
GCTGGAAGAGCAGGGGTTCGAGCAGCACCCGTGTCTCTACTGTACCGACGCCAACGCCGAGGCACCGTTCCTTTCGCAGG
ACAAGAAGGAGGAGACAGCGGTGGGCGCGGCAAGCCCGGCCATGTCGGCGGCGCTGCTGTAG------------------
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>chr5D_1_TraesCS5D01G153500
AGAAATAATGCGAGCACCAGGACTTGAACCCTAGTGGGCTGGGGATACCACTGTCACTCTAACCATCCAACCACATGTTG
GTTCGCAAAAAAAAAACTAAAATCTTGTTGCCTAAAAAAATAGAATCTTGTATTTT-TTGTCTCAGAAAAATAAACTAAA
ATGTTATTCACTTTCCTAAAAAACTGAATAGTGAAATCTTGTTCATGGAAAAAC-AAAAACAAAATTTGAGGGTCATATT
CTTGGGTGTGCACTGTGTT----AAAAAAAATCAGAGAGCTCCCGTGGAA----------------TTGGTTACACGCCA
TCGCCACCAGAAATTCATGTCCATATTTGTGGTCCTAAT---TATCACGATCAATCTTGACGATC-----------TCAC
CGTTTATGATCGATCCATGCGTAGAAGCAAGCACAATCCAAATTAATCGGAGGATACTTAACTTGACATTTAGGCAACTT
GGGT----------AGTTATGGAAGCCAAGCTGAAGCATATGCTAGAGAGACGTAAACTGGGAGGTTTACACGCTTGAAG
GCAGACCGGATTATTTAGGTGTAAGACACATAGCTTACACATTTCTTGCACGCAAGGGAGCTCTCTCCCCCACTCGAAAG
GAACGAGGGACGATATCTCAA-------CCTGCGATG--------------------------------TGACCTTCATC
TTGTTCGTGCTATGTGGA-CCGATTAATGATTCGCAAAACCGCCCACGCCGAAGATATGGAAAAACCGTCCTTGATGAGG
CGTCTAGCCTAAGTATTTCCA-----TACTAGTGTAGGATGCACTACCAGACGAGCTTAAAATTGGGCGAACTGGAAATA
T----ATCAGAAACGATATACAGAAATGGATCGCTTAACCCCGAGCACACGTTTCTTGCATTGCATCCACAGTTAAGCAA
CAGAGAGGAAGCATCTACATAACGAGTTCACGATCGTCGGGGCCATTCGCATATCTGCACACGGTAGCCTGCTGGTCTCT
TCATCCATCGCTGAGGTGACGAAGCTAGCTC----CATTGGATTGGA--ACACGCAAGAAGATGGAGGGGGAGACGAACA
AGAGGCTGGCCACGCTGGTGGGCTGCAACTACGTGGGCACGCGCTACGAGCTCCGCGGCTGCATCAACGACGTCGACGCC
GTGCGGGCCGCCCTCGTCGCCCGCTTCGGCTTCGCGCCGGCCGACGTCGCCGTGCTCACCG------ACGGGCGCGGCGC
CGAGGTGCTCCCGACGGGGGCCAACATCCGGCGCGCGCTCGCGGAGATGGTCGCCCGCGCCGCCCCCGGGGACGTGCTCT
TCTTCCACTACAGCGGCCACGGCACGCTCGTCCCGCCGCGACACGGCGACGGCGGCGCGGAGGAGGAGGCGATCGTGCCG
ACCGACTTCAACCTCATCACGGACGTGGACTTCCGGCAGCTGGTGGACCGGGTGCCGCCGGGCGCGAGCTTCACCATTGT
GTCCGACTCGTGTCACAGCGGCGGCCTCATCGACCTGGAGAAGGAGCAGATCGGGCCCTCCGTCGGCTCCGGCCCCGGCG
CACCGCCTACGGCTACCGCGCGCACCGCCCGGTTCCTTCCCTACGGCGTGCTCCTCGACCACCTCTCGGCCGTCTCGGGC
ATGCCTTCCTCCCACCACGTCGCCGACCACCTCGTGGCGCTCTTCGGCGCCGATGCCAGCGCCAAGTTCCACGTTCACGG
CGGCAGCGGCAACGGCAGCACCCTGTCCACCACGCCCGCACCGGCGCCAACGCCGCCGCGCCCGGACGAGGGTATCCTGC
TGAGCGGGTGCCAGACGAACGAGACCTCCGCGGACGTGCCGGCGTACGAGGCCAGCGGAGGCAAGGCATGCGGGGCGTTC
AGCAGCGCGGTGCAGAGCGTGCTGGCGGCGCACCCGGCGCCGCTGAGCAACCGGGAGCTCGTGGAGAAGGCCAGGGCGGT
GCTGGAAGAGCAGGGGTTCGAGCAGCACCCGTGTCTCTACTGTACCGACGCCAACGCCGAGGCACCGTTCCTTTCGCAGG
ACAAGAAGGAGGAGACAGCGGTGGGCGCGGCAAGCCCGGCCATGTCGGCGGCGCTGCTGTAGAGCACGTTCAGCTCACGT
GCTATGGAGCGGGCATGCGTTCCTCATGTGTCGTGTTTTACTGTTCCTGCGCACGTCGGATTGGATGAGGGGCCAAACTC
ACGTGCTATGTTGTTTGTGTGTGGGTCAAGTGTATAAGTGTGTGTATTATATATACACGGATTTGTTATGACTCACTTGC
ATATACTCACGTGTCATTATTGTAGATTCAAAGTCATGAAATCTTTACTTACAACTCTGTCTTCGC--------------
--------------------------------CAATTTCAAGATGTGATGTCGACTTAGTATCTTGAAGGTGTTCATAAA
TTTGGGGTGTGCATGTGTACATTTAAAGTGACGAGTGTATATGCATGTATGTGAGCATCCACGGTTGCAT-TATGTTAAA
AAGATAAATAACCATGTGGACGCAAAAGAATAATCGTGTATGTGAGCATGTACGGTTGCACTGTGTTAAAAGATAAATAA
ACGTGCGGACGCAAAAGAAAAAAAAAACTCTGTCTACGCTTTTTATACTTTTTTTGGCTTCTTACACGGTTGTCGTTTTC
TTCATCCTTGTTCATACTTCACCGAATGTCTCTATCATTGCAAGGTTTCTGAAT-TTTTCCTTTTTCAAATCTATGAACT
CTTTTAATCGTTTTCGGTTTCATTGTACGAAGATTTTTTACACGTCATGAACAATTTTTTAAAATTGATGGAATAGCAAT
TTTACATTTTTATGAACGCTTTCCAAGTGGAATGAACACTTAAAAAAATGGTATAACTATCTTGTATATGTTATGACTAT
TTTAAAAAGAGTCCATAAACAAAACTTTATATTTCTAGAACATTTTAAAAAATCATAAACATTTTTTTAAATAGGTGAAC
ATTTTTTTGAATGCACAAACAATTTCTTTAACATGTGAACATTTTCATAAGTGTTGTGCCTCTGTTTTTAAATGCATACT
AACAGCTTTTATATGTCATAGACATTTTAAAATATTGGTCAAACAATTTTTCACTTCTCATGTACATTTT
>chr5B_99
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------------------AAAATCTTGTTGCCTAAAAAAAGGTAAAATCTTGTTCACTTGTCTCAGAAAAATAAACTAAA
ATTTTGTTCACTTTCCT-AAAAAAT-AATACTGAAATCTTGTTCACGGAAAAA--------AAAAATTAAGGGTCGTATT
CGTGGGTGTGCACTGTGTTCAGAAAGAAAAACCAGAGAGCTCCCCTGGAAGAATCTTAATTTTTTTTTGATTACATGCCA
TTGCCACCAGAAATTCATGTCCATATTCGTGGTCCTAAT---TATCACGATCAATCTTGACGATCGAAGAAAACCCTCAC
CGTTTATGATTGATCCATGCGTAGAAGCAAGCACAATCCAAATTAATCGGATGATACTTAACTTGACATTTACGCAATTT
GAGAAGCGCAAAGAAGTTATGGAAGCCAAGCTGAAGTATATGCTAGAGAGACGTAAACTGGGAGGTTTATGCTCTTGAAG
GCAGGCCCGATTATTTATGTGTAAGATACATAGCTTACACATTTCTTGCACGCAAGGGAGCTCTCTCCCCCACTTGAAAG
GAAGGAGGGACGATATCTCAA-------CCTGCGATATGACCTTTTTTTTTTTTTTTTGAAACAAGATATGACCTTCATC
TTGTTCGTGCCATGTGGACCCGATTAATGATTTGCAAAACCGCCCACACCGA---TATGGGAAAACCGTCCTTGATGAGG
CGTCTAATCTAAGTACTTCCA-----TAGTAGTGTAGGATGTACTACCAGACGAGGTTAA--TTGATCGAACTGGAAATA
CGTACATCGGAAATGATATACAGAAATGGATTGCTTAACCCCGAGTACACGTTTCTTGCATTGCATCCACAGTTAAGCAA
CAGATAGGAAGCATCTATATAACGAGTTAACGATCGTCGGGAACATTCGCATATCTGCACACGGTAGCCTACTGGTCTCT
TCATCCATTGCTGAGGTGACAAAGCTAGCTG----CATTGGATTGGAG----CGCAAGAAGATGGAGGGGGAGACGACCA
AGAGGCTGGCCACGCTGGTGGGCTGCAACTACGTGGGCACGCGCTACGAGCTCCGCGGCTGCATCAACGACGTCGACGCC
GTGCGGGACACCCTCGTCGCCCGCTTCGGCTTCGCGCCGGCCGACGTCGCCGTGCTCACCG------ACGGGCGCGGCGC
CGAGGTGCTCCCGACGGGAGCCAACATCCGGCGCGCGCTGGCGGACATGGTCGCCCGCGCCGCTCCCGGGGACGTGCTCT
TCTTCCACTACAGCGGCCACGGCACGCTCGTCCCGCCGCACCACGGCGACTCCGGCGCGGAGGAGGAAGCGATCGTGCCG
ACCGACTTCAACCTCATCACGGACGTGGACTTCCGGCAGCTGGTGGACCGGGTGCCGCCGGGCGCGAGCTTCACCATTGT
GTCCGACTCGTGTCACAGCGGCGGCCTCATCGACCAGGAGAAGGAACAGATCGGGCCCTCCGTCGGCTCCGACCCCAGCG
CGGGGTCCACGGCGCCCGCGCGCACCGCCCGGTTCCTTCCCTACGGCGCGATCCTCGACCACCTCTCCGCCGTCTCGGGC
ATGCCTTCCTCCCACCACGTCGCCGACCACCTCGTGGCGCTCTTCGGCGCCGATGCCAGCGCCAAGTTCCACGTTCACGG
CGGCAGCGGCAACGGCAGCACCCCGTCCACCACACCCGCACCGGCGCCAACGCCGCCGCGCCCGGACGAGGGCATCCTGC
TGAGCGGGTGCCAGACGAACGAGACCTCAGCGGACGTGCCGGCGTACGAGGCCAGCGGAGGCAAGGCATGCGGGGCGTTC
AGTAGCGCGGTGCAGAGCGTGCTGGCGGCGCACCCTGCGCCGCTGAGCAACCGGGAGCTCGTGGCGAAGGCCAGGGCGGT
GCTGGAAGAGCAGGGGTTCGAGCAGCACCCGTGTCTCTACTGTACCGACGCCAACGCCGAGGCACGGTTCCTTTCGCAGG
ACAAGAAGGAGGAGACAGCGGTGGGCGCGGCAAGCCCGGCCATGTCGGCGGCGCTGCTGTAGAGCACGTTCAGCTCACGA
GCTACGGAGCGGGCATGCGTT--TCATGTGTCGTGTTTTACTGTTTCTGCGCACGTCGAATTGAATGAGGGGCCAAACTC
ACGTGCTATATTGTTTGTGTGTGGGTCAAGTTTATAAGTGTGTGTATTATATATACACGGTTTTGTTATGACTCACTTGC
ATATACTCACGTGTAATCATGGTAGCGTTCAAGTCATGAAATCTTCGCTTACAACTCTGTCTTCGCT-------------
---------------------------------AATTTTAAGACGTGATGTGGGCTTAGTATCTCGAAGATGTTCATAAG
TTTAGAGTGTGCATGTGTATATTCAAAATGATGAGTGTATATACATGTATGTGAGCATTCACAGTTGCGT-TGTGTTAAA
AAGATAAATAAACGTGTGAACGA---------------------------------------------------------
-----------------AAAGAAAAAACTCAGTCTTCGCTTCTTATATTATTTTT---TTCTTACACAGTTGCCGTTTTG
TTCATCCTT---CATACTTCACTGCATGTCTCTGTCATTGCAAGTTTTTGATTTATTTTCCTTTTTCAAATCTACGAACT
CTTTTAATCGCTTTT-GTTTTAGCGTACAAAGATTTTTTACATGTCACAAACAATTTTTAAAAATTACATGAATAGCAAT
TTTACATTTTTATGAACGCTTTCCTAGTGGAATGAACATTTTCAAAAATGGTATAAATATCTTGTATATGCTATGAATAT
GTTAAAAA-AGTCTGTAAACAAATTTTTACATTTCTAGAACATTTTGAAAAATCATGAACATATTTTTAAATAGGTGAAC
ATTTTTAATGTACAAAAAAAAA--TCTTTAACATGTGAACATTTTCATAAGTGTTGTGCCTCTGTTTTTAAATGCATACT
AACAGTTTTTATATGTCATAGACATTTTAAAAAATTGGTCAAATAATTTTTCACTTCTCATGCACATTTT
>chr5A_114
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----------------------------------AAAAAAACTAAAATCTTGTTCACTTGTCTCAGAAAAATGAACTAAA
ATTTTGTTCACTTTCCT-AAAAACCGAATAGTGAAGTCTTGTTCACGGAAAAAAGAAAAACAAAATTTGAGGGTCATATT
CCTGGGTGTGCACCGTGTTCAGAA--AAAAAACAGAGAGCTCCCCTGGAAG---------TTTTTTTTGATTACACGCCA
TTGCCACCGGAAATTCATGTCCATATTCGTGGTCCTAATAATTATCACGATCAATCTTGACGATCTAAGAAAACCCTCAC
TGTTTATTATCGA-------------------------------------------------------------------
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-----------------------------------------------------------------TCCCCCACTAGAAAG
GAACGAGGGACGATATCTCAATTCTCAACCTGCGATG--------------------------------TGACATTGATC
TTGTTCGTGCTCTGTGTA-CCGATTAATGATTCGCAAAACCGCCCACACCGAAGATATGGAAAAACCGTCCTTGATGAGG
CGTCTAGTCTAAGTATATTTCCATAGTAGTAGTGTAGGATGTACTACCAGACGAGGTTAAAATTGATCGAACTGGAAATA
T----ATCAGAAACGATATGCAGAAATGGATTGCTTAACCCCGTGCACACGTTTCTTGCATTGCATCCACAGTCAAGCAA
CAGAGAAGAAGCCTCCATATAACGAGTTCACGATCGTCGGGGACATTCGCACATCTGCACACGGTAGCCTGCTGGTCTCT
TCATCCATTGCTGAGGTGACGAAGCTAGCTACGTACATTGGATCGGAACACACGCAAGAAGATGGAGGGGGAGGCGAGCA
AGAGGCTGGCCACGCTGGTGGGCTGCAACTACGTGGGCACGCGCTACGAGCTCCGCGGCTGCATCAACGACGTCGACGCC
GTGCGGGCCGCCCTCGTCGCCCGCTTCGGCTTCGCGCCGGCCGACGTCGCCGTGCTCACCGACGGGGACGGGCGCGGCGC
CGAGGTGCTCCCGACGGGGGCCAACATCCGCCGCGCGCTCGCGGACATGGTCGCCCGCGCCGCCCCCGGGGACGTGCTCT
TCTTCCACTACAGCGGCCACGGCACGCTCGTCCCGCCGCGCCACGGCGACGGCGGCGCGGAGGAGGAGGCCATCGTGCCC
ACCGACTTCAACCTCATCACGGACGTGGACTTCCGGCAGCTGGTGGACCGGGTGCCGCCGGGCGCGAGCTTCACCATTGT
GTCCGACTCGTGCCACAGCGGCGGCCTCATCGACCAGGAGAAGGAGCAGATCGGGCCCTCCGTCGGCTCCGGCCCCGGCG
CGCCGT---------CCGCGCGCACCGCCCGGTTCCTTCCCTACGGCGCGCTCCTGGACCACCTCTCCGCCGTCTCGGGC
ATGCCTTCCTCCCACCACGTCGCCGACCACCTCGTGGCGCTCTTCGGCGCCGACGCCAGCGCCAAGTTCCACGTTCACGG
CGGCGGCGGCAACGGCAGCGCCCTGTCCACCACGCCCGCACCGGCGCCAACGCCGCCGCGCCCGGACGAGGGCATCCTGC
TGAGCGGGTGCCAGACGAACGAGACCTCTGCGGACGTGCCGGCGTACGAGGCCAGCGGAGGCAAGGCATGCGGGGCGTTC
AGCAGCGCGGTGCAGAGCGTGCTGGCGGCGCACCAGGCGCCGCTGAGCAACCGGGAGCTCGTGGCGAAGGCCAGGGCGGT
GCTGGAAGAGCAGGGGTTCGAGCAGCACCCGTGCCTCTACTGCACCGACGCCAACGCCGAGGCGCCGTTCCTTTCGCAGG
ACAAGAAGGAGGAGACAGCGGTGGGCGCGGCAAGCCCGGCCATGTCGCCGGCGCTGCTGTAGAGCACGTTCAGCTCACGA
GCTATGGAGCGGGCATGCGTTCCTCATGTGTCATGTTTTACTGTTCCCGCGCACGTCGGATTGGATGAGGGGCCAAACTC
ACGTGCTATATTGTTTGTGTGTGGGTCAAGTGTATAAGTGTGTGTATTATATATACACGGATTTGTTATGACTCACTTGC
ACATACTGATGTGTCATTATTGTAGCTTCAAAGTCATGAAATCTTCACTTACAACTCTGCCTTTGCTTCTTGTATGTTTT
TTTCTTGTTTTGCTTATATGTGATGACTTTATCAATTTCAAAATGTGGTGTGGGCTTAGTATATCGAAAGTGCTCATGAG
TTTACAGTGTGCATGTGTACATTCGAAATAATGAATGTATATGCATATATGTAAGCATCTATCGATTACACTATGTTAAA
AAGATTAATAAACATGCGGATGCAAAAGAA--------------------------------------------------
-----------------------AAAACTATGTCTTTGTTTC---------------------------TTGCCGTTTTC
TTCATCCTTGTTAATACGTCAGTGCATG------------------------------------------TCTACAAACT
CTTTTAATCATTTTCCGTTTTAGTGTACAGTGATTTTT-ACACGTCATG----ATTTTTTTAAATTGCATGAATAGCAAT
TTTACATTTTTATGAACACATTCCAGGTGGAATGAACATTTTGAAAAATGGTATAAATATCTTGTATATGCTATGAAAAT
GTTAAAAA-AGCCTGTAAACAAAATTTTACATTTCTAGAACATC-TAAAAAATCATGAACATATTTTTAAATAGGTGACC
ATTTTTTTAAATGCACAAACAATTTCTCTAACATGTGAACATTTCCATAAATGCTGTGCCTCTGTTTTTAAATACATACT
AACAGTTTTTATATGTCATAGACATTTCAAAAAATTGGTCAAACAATTTTTCACTTCTCATGTACATTTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS----------------------SSS--SS-SS-S--SS------------------------
--S--S-----------S---------------------------S-------S--------------------------
-S-----------------------S-----S------------S------------------------S----------
-S-------------------------S----------------------------------------------------
---------------------------------------------------S--------------------S----S--
-S-S--------------------------------S--------------------------------SS-S-------
----S--S---------S--------S-----------------------------------------------S-----
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-----------------------------------------------S--------------------------------
-------S--------------------S------------S-------------S---------SS-------------
-------------------------------S------------------------------------------------
-----------------S------------------------S-------------------------------------
--------S---------------------S----------------------------------------------S--
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---------------------------------------------S----------------------------------
----------------------------------------S---------------------------------------
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-----------------------------------S--------------------------------------------
-S---S-S-----SS---------------------------------S------------------S------------
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------------------------------------------------------------------------S-------
----------------------------S---------------------------------------------------
----------------------------------------------------------------S---------------
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-------------------------------------------------------------------------------S
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---------S----------------------------------------------------------------------
-------------------------S-------------------S----------------------------------
---------------------------------------------------S-S----------S--------------S
---S-S-----------------S---S---S------------------------------S-----S-----------
-----------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---S--------------S-----S-----S-S-----SSS---------S----S-------
----------------------S-S--------S----------S---SSSSS---------------------S-----
---------------S----S-S-----S--------------------------------------SSS----------
--------------------------------------S--SS-------------S-------------S-----S---
S-------S----SS---------S----S--------------------------S-----S-----------------
--------S-----------------------------------------------------------------------
-----S--------------------------S-------------------------------------
>forward_310
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--------------------------------------------------GAGAGCTCCCGTGGAATTGG----------
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>reverse_1556
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-----------------------------------TGGAGAAGGAGCAGATCGGG-------------------------
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>forward_1118
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----------------------------------------------------------AAGATGGAGGGGGAGACGAA--
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>reverse_2603
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------------------------------------------TGAGCATGTACGGTTGCACT------------------
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