>input_sequence_62552
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---------------ATGGCGGAGAAGAACAGTAAGAAGGCGGTGCGCATGGCGCAGCAGGAGCTGGAGGACCTCTACCT
CGCCGTCCCCGACGGCTCCGTCGACCTCACCTTCCGAGACTTCGTCGTCGCCCCGCCACCTCTACCTGCGCCCACCGCCT
CCTCCGTAGCGCCTGCTCCCAC---CTTGGCCCCCATCCACGAGCTGGAGCAACCAGATGAAGACGATCCC---------
------ACCGAGCGCAGCAACAAGGCACTGCTCAGCAGGACCTCCACCAATATCTTCACCTACAAGATCGAGTCCGCCTC
CTCTTCCGACGACGACGG---------CCAGAGCCAGACTGTGAAGCAGCAAGACGCCGCCACAGCA---GGCTTCCAGC
TCTCCCCATCCCC---------TCCTCCAG------------CCGGCCGCACCACCACCACCAGAAGCAGCACAGCAGCA
GCCGGA---CAGCAGCACCCTCCTCCCGCCCACGCCCACGCCCACGCCGGCAGCGGCAGAAGCCGGCAGATGCGCCGGGC
CGGCATCCCGCACTCCAACCTCTGCGCCACGTGCAGCCGCTACATGCACGTCTTCCGCCACCGCTGCCTCGTCTGCGGCC
GCGCCTACTGCCGCCGCTGCGTGGGCGCCGGCATGGGCGACATGACCGAGGGCCGCAAGTGCCTCGGCTGCCTCGGCCGC
AAGTACAGCCACCGCTACATCCACCGCGCCGGCCGGGGCGCCACCGCCGCCGCGGGCCTCCTCTGCCTCTGCTGCTGCGC
GCTCCACGCCTGGGGCTCTTCCTCCTCCGTCAGGGCCGAGGAGCTGCTCTGGGCCGAGAAGGGCCCCGCGCCGCGCCGCC
GGCCCTCCACGTCTTCTTCCACCACCTCCATCTCCGCGTCCTACAGCACGGCCGCGGGTGGCGGCGGGGGATACTCGGCG
TCCATGAGCATGACCATGATGAGCATCAACAGCGGCGCCAGCAACAGCAACGGGCACGGCCACAGGAACAGCAACGTCGT
CGTCGTCGCGCCACCGCCTGCATCCTTCTCCCGCAC---CGCCAACCCGCACGCCTTCCCTCTCTAA-------------
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>chr3D_1_TraesCS3D01G542200
GTGCTAGTGTCACATATGGAAAATCTTGCATGCAAAATTTAATGAGTTTGAATCCGCGAGGCATTAATGAAAAACCAGCT
AGGTGCCCGGGCACCTAGGTGCCCCAAACATTTTACCTATATATGTGTGTGTACGTACTTTAGCGATGTCTCCTAGCTTC
ATCCATGATGACATGCATGTCG------TCCATCTATCTAGTATCTATTACTCCTAGG--------TTTTTGTTTCACAC
ATGACATGACATGCATGC----ATGTATG----------TAATATTAAGTAGGTAGAAGAATTAATGC------------
-TAGTTATTGTTTCTACTAGTTTTTTTCTTTTTGAAA----GCATGTTTTTGTTTCTAGTCTGTCTGTCTAGTTATACTA
--TACTATAATGACAAAATGATGGTGGGAAATTAAG-------AGGATGCGGAAAA--------TATGTGTACGCGCGCG
GAT----GGCCGGCCGGCCGTACGTGTGAATCGGATCATTAT----TCCATGGGATTCATCGACGGAACAAGGATGC---
--------AAACCAAAGCAGCTAGCCATGCCATGGATGGAATCGCCTCTCCCATCCTTGATTATTTGTCTCTCTCT----
----------------CTCTCTGGCCTGCTGGCTGGCTATCTGGCGATGAGTTTGTCGACGGAGACGGAGACGGAGACAG
AGACGGAGACAGAGTATTATC---TTAGCTGCTGCAACCTGCCTGCACCTGCAAGGCAGCAAGGCCGGCCATCACCTTCT
TCACCTCGGAATTAGCACTG--------CCGGCCGGCCGGACACAAGCAAACAGAGCTAGGTGGGTAGCTGGAATCGGAA
GGG-------------ATGCACGCACGTACGTATGCATCAGCCGGCCATGGGTGCGTCGTATCTCCAGCCCAGCCCAGCC
CAGCCCAAGCCAGCCATGGAATGGATCATCACATCTTCTTGTATATGCTACATATATAAACCTCCACAT-CACCACCGAC
CCTAA---------ACCCATACAGATTGAGAGCAAGAAACCAAGCTAATATAGGGAAAAGAAAGAAAGAAAGAAATATAG
CTAGGGAGAGTGAGGATGGCGGAGAAGAACAGTAAGAAGGCGGTGCGCATGGCGCAGCAGGAGCTGGAGGACCTCTACCT
CGCCGTCCCCGACGGCTCCGTCGACCTCACCTTCCGAGACTTCGTCGTCGCCCCGCCACCTCTACCTGCGCCCACCGCCT
CCTCCGTAGCGCCTGCTCCCAC---CTTGGCCCCCATCCACGAGCTGGAGCAACCAGATGAAGACGATCCC---------
------ACCGAGCGCAGCAACAAGGCACTGCTCAGCAGGACCTCCACCAATATCTTCACCTACAAGATCGAGTCCGCCTC
CTCTTCCGACGACGACGG---------CCAGAGCCAGACTGTGAAGCAGCAAGACGCCGCCACAGCA---GGCTTCCAGC
TCTCCCCATCCCC---------TCCTCCAG------------CCGGCCGCACCACCACCACCAGAAGCAGCACAGCAGCA
GCCGGA---CAGCAGCACCCTCCTCCCGCCCACGCCCACGCCCACGCCGGCAGCGGCAGAAGCCGGCAGATGCGCCGGGC
CGGCATCCCGCACTCCAACCTCTGCGCCACGTGCAGCCGCTACATGCACGTCTTCCGCCACCGCTGCCTCGTCTGCGGCC
GCGCCTACTGCCGCCGCTGCGTGGGCGCCGGCATGGGCGACATGACCGAGGGCCGCAAGTGCCTCGGCTGCCTCGGCCGC
AAGTACAGCCACCGCTACATCCACCGCGCCGGCCGGGGCGCCACCGCCGCCGCGGGCCTCCTCTGCCTCTGCTGCTGCGC
GCTCCACGCCTGGGGCTCTTCCTCCTCCGTCAGGGCCGAGGAGCTGCTCTGGGCCGAGAAGGGCCCCGCGCCGCGCCGCC
GGCCCTCCACGTCTTCTTCCACCACCTCCATCTCCGCGTCCTACAGCACGGCCGCGGGTGGCGGCGGGGGATACTCGGCG
TCCATGAGCATGACCATGATGAGCATCAACAGCGGCGCCAGCAACAGCAACGGGCACGGCCACAGGAACAGCAACGTCGT
CGTCGTCGCGCCACCGCCTGCATCCTTCTCCCGCAC---CGCCAACCCGCACGCCTTCCCTCTCTAAGTCTCTAGCTAGC
TAGG-----------ACTTGAGCTGCTTAATAGTAATAAATACTCTGCTCTGCTATGTGATACAATTCCATTTATTCGAT
TTTCTTTTCTGTTGCCAACAGTTGATTCCACCGGCCGGTTTTGCTT-----GCAACATTAATTTTCCAACACATGTA---
TGCTCTGCCATGTA------GTAATAACTACTCCCTCCGCCCCATAATATACTCCCTCCTTTCCAGTTTATAGGGCTCAA
TTCAAAAATCTCACCAACCAAGGTAGATGGTGAGTGGTGAAATACTTTTTGTAGTTTGCAAAAGCACCTAATTAATACTT
TTGTTTTCCTCAAAAAATTATGTTTATCAATGCATTAATTGCAATCATGCATGCATAAAGTACATGCATTGGTCAATTTT
CTCTTAATACTTGCATGCAATGATTTAATGCATCTTGGAGTCTGAACATGTGATGAAAACAACCAAATTGAGCCTTATAA
AATGGAAAAACTAAAATTTTGAGATAAGCCCTATAAACCGGAAAGGAGGGAGTAAGACATTATATTGGATGTAATAATGG
ACGCGGATTTTTGGGACATGGTGGCGCGCGAGGATGAAATCTGGACGGTCCATCTATGCTATAAGATTAGCAATTAATAT
AGTGATTAAATGAATACCCAAACAATACGCGAGGTTAATTCAGCAAATACGTGTACATGGGTTGGTGGCTAGCCATCTTA
AATGGAATTAGATACAAGCGAATATGCATGCAAAATACGGTCTTGACCGTTCTGCCATGTTAATGTGGTGCAGGCCATTT
AAAACACTGGTCTGCAACGTTTAAATGTGGCTGTCTCAAACCTGTATGCCTTGAATGGCATTTAACAAGTCTGGAGCTGC
CGATTTTGTTTTGGTTTGTGTTGCCCAACTTCATTTTTCGTGTGTATTATTGAGGGTACTGTTGTATCAGTTCATCAAAG
CACTGCCACTATTCATGTTAATGCTGCAGTATTACCTCGTGGATGATGGGAT
>chr3A_145
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----------------------------------------------------------------GATTTCTCCTAGCTTC
ATCCATGATGACATGCATGTCGAATTCATCCATCTATCTAGTATCTATTACTCCTAGG--------TTTTTGTTTCGCAC
ATGACATGACATGCATGTATGTATGTATG----------TAATAATAAGTAGGTAGAAGAAAGCATGC------------
-ATGTTTTTGTTTCTATACTAGTTTTTGTTTTTGAAAGCATGCATGTTTTTGTTTCTAGTCTGTCTGTCTGTCTAGTTAT
ACTACTATAATGACAAAATGATGGTGGGAAATTAAG-------AGGATGCGGAAAA--------TATGTGTACGCGCGCG
GAT----GGCCGGCCGGCCGTACGTGTGAATCGGATCATTAT----TCCATGGGATTCATCGACGGAACAAGGATGC---
--------AAACCAAAGCAGCTAGCCATGCCATGGATGGAATCGCCTCTCCAATCCTTAATTATTTGTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTGGCCTGCTTGCTGGCTATCTGGCGATGAGTTTGTC------------------GACGG
AGACAGAGACACAGTATTATCTTATTAGCTGCTGCAACCTGCCTGCACCTGCAAGGCAGCAAGGCCGGCCATCACCTTCT
TCACCTCGGAATTAGCACGG--------CCGGCCGGCCGGACACAAACAAACAGAGCTAGCTAGGTGGGTATAGCTGGAA
CGGAAGGGATACGCGCATGCACGCACGTACGTATGCATCAGCCGGCCATGGGTGCGTCGTATCTCCAGCCCAGCCCAAG-
-----------------------------CACATCTTCTTGTATATGCTACATATATAAACCTCCACAT-CACCACCGAC
CCTAA---------ACCCATACAGATTCAGAGCAAGAAACCAAGCTAATATAGGGAAAAGAAAGAAAG----AAATATAG
CTAGGGAGAGTGAGGATGGCGGAGAAGAACAGTAAGAAGGCGGTGCGCATGGCGCAGCAGGAGCTGGAGGACCTCTACCT
CGCCGTCCCCGACGGCTCCGTCGACCTCACCTTCCGAGACTTCGTCGTCGCCCCTGTACAACCAC---------CCACCG
CCTCCGTAGCGCCTGCTCCCAC---CTTGGCCCCCATCCACGAGGTGGAGCAGCCCGACGAGGACGATCCC---------
------ACCGAGCGCAGCAACAAGGCGCTGCTCAGCAGGACCTCCACCAACATCTTCACCTACAAGATCGAGTCCGCTTC
CTCTTCCGACGACGACGG---------CCAGCGC------------CAGCAGGACACCGCCACAGCA---GGCTTCCAGC
TCTCCCCTTCCCCCTCCCCTCCTCCGCCCGGCCGCTCCCACTCGCGCACCACCACCACCACCAGAAGCAGCACAGCAGGA
CAGCAGCAGCAGCTGCGCCCTCCTCCCGCCCACGCC------------------GGCAGAAGCCGGCAGATGCGCCGGGC
CGGCATCCCGCACTCCAACCTCTGCGCCACCTGCAGCCGCTACATGCACGTCTTCCGCCACCGCTGCCTCGTCTGCGGCC
GCGCCTACTGCCGCCGCTGCGTGGGCGCTGGCATGGGCGACATGACCGAGGGCCGCAAGTGCCTCGGTTGCCTCGGCCGC
AAGTACAGCCACCGCTACATCCACCGCGCCGGCCGGGGCGCCACTGCCGCCGCGGGCCTCCTCTGCCTCTGCTGCTGCGC
GCTCCACGCCTGGGGCTCCTCCTCCTCCGTCAGGGCGGAGGAGCTGCTCTGGGCTGAGAAGGGCCCCGCACCGCGCCGCC
GGCCCTC---GTCTTCCTCCACCACTTCCATCTCCGCGTCCTACAGCACGGCCGCGGGTGGCGGCGGGGGATACTCGGCG
TCCATGAGCATGACCATGATGAGCATCAACAGCGGCGCCAGCAACAGCAACGGGCACGGTCACAGGAACAGCAACGTCGT
CGTCGTGGCGCCGCCGCCTGCATCCTTCTCCCGCGGCAGCGCCAACCCGCACGCCTTCCCTCTCTAAGTCTCTAGCTAGC
TAGCTAGGACTTGACACTTGAGCTGCTTAATAATAATA----------------ATGTGATACAATTCCATTTATTCGAT
TTTCTTTTCTGTT---------TGATTCCACCGGCCGGTTTTGCTTTGCTTGCATCATTAATTTTCCAACACATGTAGTA
TGCTCTGCCGTCATGTGTTGGTAATAACTAGTCCCTCCATCCCATAATA-------------------------------
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>chr3B_180
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-------------------TCA------TCCATCCACCTAGTATCTATTATTACTCCTAGGATTCCTTTTTGTTTCACAC
ATGACATG-CATGCATGTATGTATGTATGTATGTATGTATAATAATAAGTAGGTAGAAGAAATAATTAATATTTGATGCA
GATGTTTTTGTTT---CTAGTTTTTTTCTTTTTGAAA----GCATGTTATTGTTTCTAGTCTATCTATCTAGTTGTACCA
G---CTATGATAATGAAATGATGGTGGGAAATTAAGGGAGAGGAGGATGCGGAAACCCAATACGTATGTATACGCATATA
GATGGCCGGCCGGGCGGGCGGGCGTGTGAATCGGATGGGAGGGACATCCATGGGATTCATCGACGGAACAAGCAAGCTAG
GATGCAAAAAACCACAGCATGCATGCA-GCCATGGATGGAATCGCCTCTCCA----------------------------
CTTTGTCTCTCTCTCTCTATCTGGCTTGCTGGCTGGCGATGAGTTTATTTGTCA-------GAGACAGAGACAGAGACAG
AGACAGAGACAGACTATTAGCTTA---GCTGCTGCAACATGCATGACAG---------GCAAGGCCGGCCATCACCTTC-
--ACCTCGGAATTGGCACGGACGGACGGCCGGCCGGCCGGACACAAACAGATGTAGCTAGCTAGCTGGAACGTTACGTAT
ACGGGC------------GCATGCACGCACGTATGCATCAGCCGGCCG-----GCGTCGTATCTCCAGCCCAACCCAGCC
CAGCCCAGCCCAGCCATGGATCTTCTTCACATCAACGAT------------ATATATAAACCTCCCTCCACATCACCTAC
CCTATATATCAATCACACCGACCCATTCACAGCAAGGAAGCAAGCA-----AGGGAAACGAAAGAAAG----AAAGAGCA
AG---------GAGGATGTCGGAGAAGAACAAGAAGAAGGGTGTGCGCATGGCGCAGCAGGAGCTGGAGGACCTCTACCT
CGGCGTCCCCGACGGCTCCGTCGACCTCACCTTCCGAGACTTCGTCGTCGCCCCGCCACCACCGC---------CCACCG
CCTCCGTGTCGCCTGCTCCCACCTGCTTGGCCCCCATCCACGAGC------AACCTAATGAGGACGACCCTGCAGCTGCA
GCCGAGACCGAGCGCAGCAACAAGGCGCTCCTCTCCAGGACCTCCACCAACATCTTCACCTACAAGGTCCAGTCATCCGC
CTCTTCCGACGACGACGACGACACCACCCAGCGC------------CACCAGGACACGACAACACCGCCGGGCTTCCAGC
TCTCCCCTTCCCCGTCCCCTCCTCCGCCCG------------CCCGCTCCTCCCGCGCCACCAGAAGCAGC---------
------------------------------------------CACGCCGGCAGAAGCGGCCGGCCC---ATGCGCCGGGC
GGGCATCCCGCACTCCAACCTCTGCGCGGCGTGCAGCCGCTACATGCATGTCTTCCGCCACCGCTGCCTCGTCTGCGGCC
GCGCATACTGCCGCCGCTGCGTGGGCGCCGGCATGGGAGACATGACCGAGGGACGCAAGTGCCTCGACTGCCTCGGCCGC
AAGTACAGCCACCGCTACATCCACCGCGCCGGCCGGGGCGCCACCGCCGCCGCGGGCCTCCTCTGCCTCTGCTGCTGCGC
GCTCCACGCCTGGGGCTCTTCCTCCTCCGTCAGGGCCGAGGAGCTGCTCTGGGCCGAGAAGGGCCCCGCGCCGCGCCGCC
GGCCCTCCACGTCTTCCTCCACCACATCCATCTCCGCGTCCTACAGCACGGCGGCCGGTGGTGGGGGTGGCTACTCGGCG
TCCATGAGCATGACCATGATGAGCATCAACAGCGGCGCCAGCAACAGCAACGGCCACGGCCACAGGAACAGCAACGTCGT
CGTCGTCGCACCGCCGCCTGCATCCTTCTCCCGCAGCAGCGCCAACCCGCACGCTTTCCCTCTCTAGTCTACTCTCTACA
CCTCGCACGCTAGCCT-----GCTGCTTAATAACTAC----ACTCTGCTCTGTCTCTGTGAT--ATTACATTTATTCTAT
TTTCTTT-CTGTTGCCAACA------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------
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-----------------S--------------------------S----------------S------------------
-SS---S-----------------------------------------------------------------------S-
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---------------------------------------------------S------S---------------------
---------------------------------------------------------SSSS-----S-----S-------
----S---------------------------------------------------------------------------
------------------S---------------------------S-------------S-S---S-S-S--SS-----
S-------------------------------------------------------------------------------
-------SS-----------SSSSS-SSS---------------------------------------------------
---------------------------S----------------------------------------SSSS--------
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------------------------------------------------------------S-S--SSSSSSSSS--S--S
-------------------------------------------------------S-----S------------------
--------------------------S-----------------------S-----------------------------
-------------------------------S--SSSSSSSSSSSS-----S---S------------------------
-------S-----------------S--S---------------S--SS-----------------------------S-
SSSSSS-------S--S-------------------SSSSSS-----------S--------------------------
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----------------S--------S------------------------------------------------------
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------------S----------------------S--------------------------------------------
---S----------------------------S-----SSS-----------SS--------------------------
--------------------SS--------------------------------S-------------------------
---------S-SSS----------------S-------SS---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_111
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-----------CACCTAGGTGCCCCAAACAT-------------------------------------------------
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>reverse_1336
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-------------------------------------------------------AGATGAAGACGATCCCACCG-----
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>forward_619
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---------------------------------------AATCGCCTCTCCCATCCTTG---------------------
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>reverse_2026
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-------------------------CTCCATCTCCGCGTCCTACA-----------------------------------
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>forward_699
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---------------------------------------TCTGGCGATGAGTTTGTCGA---------------------
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>reverse_2802
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-CGCGGATTTTTGGGACATGG-----------------------------------------------------------
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