>input_sequence_62549
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-----------ATGGGATGCACGGCGTCCACGCGACGTGCGGGGTGGGGCTCGCTCGTGTTCGATGTCTCAGGGTACGGC
GGAGTTAGCCTCGACGTACAATCATCAGAAGTATTCACCGTCGGCGCTTACGACTGGCAGATTCGTTTCTATGAGGAAGG
AGTGTTTGGGCATTCCGGAGGCTATGTGGCGGTCTATCTCTTTTTAGTCAGCAAGAAGGCCAAGGTGAGGGCAACATTCG
AGCTCAGTTTGGTGGACATCACTGGATCAACGCCGCCTCGTACGATGAGGACGGTCGACGCAGAATTTGACTCTGGCGAC
CGAACGTGCTTCGGCCATCCCGAGTTCATGAGGAAGAGCGAGCTCGAGGCGTCGCCTTACCTTCGCGG---CGATCGCCT
CACAATTGAGTGTGCCATCACTATCTGCAAGGAAGCGCCGGTCTCGTCGAAATCGTTTGCTGAGGTGCC------GCCAT
CCGACATCACGGATCACCTCAGGAAGCTGTGGCAAGGGAAAGAGGGCAGCGATGTCACCTTCGAGGTTCAAGGGGAGGCT
TTTCCTGCCCACAAGACGGTGCTCGCGATGCGGTCGCCGGTGTTTAAGGCAGAGCTGTACGGTGCCTTGAGGGAAAATGA
TATGGGTCGCGTTATCATTGGCGACATGCAACCTGCAGTCTTCGAGGCCCTGCTCCATTTTATATACACCGATTCATTGC
CCACCATGGATGATCTTTACCAAGATCAAGATGAATACAAAGAGATTATTGGACATTTGCTTGTAGCCGCGGATCGGTAT
GCCATGGAAAGACTGAAGATCATATGTGAAAGCATCCTTTGCAAGAACATAGATGTGAAGACCGTGGTGACTACACTGGC
TTTGGCTGATCAGCATCACTGCAACAAGTTGACTGATGCTTGCATTGAATTTATTGCCTCTTTGGGTAAAGTGGATGATA
TAATAGCAAGCCAGGGATATGCTGAGCTCAAAAGAACCTGTCCTTTGGCTTTACTGGAACTGTGGGAGAAGGCAACTAGG
CTCTACATGATATAG-----------------------------------------------------------------
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-------------------------------------------------------------------
>chr3D_1_TraesCS3D01G177000
ATATCGCGGATAGGTCTCCAGTGACTTGACAAAACACTGGCCCTTGAAATCTCTTTAGGAGGCAACGTTGACAAAATTAT
GCACATCACATCCTGCGTTAACGGAATATAGATGCTCAAGATTACAAGTTATAGTTGTACTCGACTGTATATCAGAAAAA
GGAAAATTTGGCACACATTTGAAAGGTCTTCCAATTTAATGTGTGACCTCGACTTCTTATAGATTGAATTCCCATGGGTA
TGGTCTGATGATGTT-GCTTTGCACATTTGATGCCTCCCCATTTGTAAAACCGAATATGAGAAGTCAGAGTTCCTCCAAG
ATTATATG-----------------------------------------------------GTATTAACTAGTGGATATT
CACAAGTGTATTAACTAGTAGTAGTAGGCATTACCGTGGATAATTCGAGGAACTAGTA----------------------
---------------------------GTTTGTCGTCGGTGCCAGCGGTTCGGTGCTTGGGGGGTCCGATTGTTTTTTTT
TAAGAAAACCCGCCCACTTTATTGATTCATCTCAATGATCATAGGTACAAGGTTTTGTTCATGGGGTAGTCCCAACCAAA
TGTGTCGGCCAGGCCCAAGATTACAATCAAACTTGGCGAGATTATGAGCTTTTAAATTAAACAAACTACGCTCATGACTA
AAACAGCAAAAAGCAAAAGTATTTCTAGTGAAATTAATCTCCTTTATTATGGCGCCGTGTTCTCCACCAGATTCTTTTTT
TTAGCACTGTTCTCCACCAGATTCATTCCCAATATCTTTGATCACCCCCTCACAATCAGAAAGAAGCAATGTTGGCTTTT
AACAGGACGTCGAGACCATTTGATTCGTCCAGG-----------------------------------------------
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---------------------AGGAGGAATTGGACTCGGATTCCTGGGCCCGATTTTAGAGAGGAAG--GAAGCGCGTTC
CGCTTCCCGGCCCAACCCTCTTTCCTTCCGCTTCCCGGCCCAACCCTCCATACAAATGCAAAACCCTAATAAGAAACCCT
AAGAAACCCTTCTCCCCCGCCACCGGCCACCACCCCGAC-------------------CA-------------------A
CGGAGGCAGCGATGGGATGCACGGCGTCCACGCGACGTGCGGGGTGGGGCTCGCTCGTGTTCGATGTCTCAGGGTACGGC
GGAGTTAGCCTCGACGTACAATCATCAGAAGTATTCACCGTCGGCGCTTACGACTGGCAGATTCGTTTCTATGAGGAAGG
AGTGTTTGGGCATTCCGGAGGCTATGTGGCGGTCTATCTCTTTTTAGTCAGCAAGAAGGCCAAGGTGAGGGCAACATTCG
AGCTCAGTTTGGTGGACATCACTGGATCAACGCCGCCTCGTACGATGAGGACGGTCGACGCAGAATTTGACTCTGGCGAC
CGAACGTGCTTCGGCCATCCCGAGTTCATGAGGAAGAGCGAGCTCGAGGCGTCGCCTTACCTTCGCGG---CGATCGCCT
CACAATTGAGTGTGCCATCACTATCTGCAAGGAAGCGCCGGTCTCGTCGAAATCGTTTGCTGAGGTGCC------GCCAT
CCGACATCACGGATCACCTCAGGAAGCTGTGGCAAGGGAAAGAGGGCAGCGATGTCACCTTCGAGGTTCAAGGGGAGGCT
TTTCCTGCCCACAAGACGGTGCTCGCGATGCGGTCGCCGGTGTTTAAGGCAGAGCTGTACGGTGCCTTGAGGGAAAATGA
TATGGGTCGCGTTATCATTGGCGACATGCAACCTGCAGTCTTCGAGGCCCTGCTCCATTTTATATACACCGATTCATTGC
CCACCATGGATGATCTTTACCAAGATCAAGATGAATACAAAGAGATTATTGGACATTTGCTTGTAGCCGCGGATCGGTAT
GCCATGGAAAGACTGAAGATCATATGTGAAAGCATCCTTTGCAAGAACATAGATGTGAAGACCGTGGTGACTACACTGGC
TTTGGCTGATCAGCATCACTGCAACAAGTTGACTGATGCTTGCATTGAATTTATTGCCTCTTTGGGTAAAGTGGATGATA
TAATAGCAAGCCAGGGATATGCTGAGCTCAAAAGAACCTGTCCTTTGGCTTTACTGGAACTGTGGGAGAAGGCAACTAGG
CTCTACATGATATAGTCTTCATTTCACATTGGCATGCGTGTTAAGTCGCATACATATCTTGCTACTTGTTTGATGAAGGA
TTAGTTTATTTTAATATATATGGAGCTTCGGTGAAAAACAGTACTACTCTGCTAATGTTTTTCATTTGCCAAGATGTTGC
ATACTTATCCTTTTAGCGCAAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAATTGTTTGTTAAAAATTAA-GTC
ATAGGTTTTAATTACCACACTACATGTGCAGGCTAGTGTATGCTACTCAGTTCGATGGTGATATCTGCCGTAACGAATAA
GCAGCAAAATGCGACAAGAGTGGGCCAGGAGTGTGTTAATGTGATTATAAGGGAACATTTCATCAAAATATGAAATTCGA
AACGGGAGAACGAATGCCACATTTTCGAACTCTTGAGTGTTGTAAAACAATGGGGGTGCATTTGAAACAATAATTCTTGC
ACTGGAAGGTGTTCAATTTCTATTGTCAGGTACTTTTCTGTTCTTGCATCCTCCAATTGGTTTCAGTTTTTATTTTAC--
-TTACCTGAAAAGTTGAGACTGAATCCATAAGCAGTTGACCCATCGGTATGCTTTTAAT-CTTTTACAAATATAAAATGA
ATTAAGTAATCAATCTAACCTATGGAATGATTGAGTACCATCACATCATCCAACTATACTGTTATATAAACATCATC-GG
TACATCACAGTATTGGGCAATTGGCCTATAT--TGCTATTACTTTGAATGAAACACATTTGTACTATATGACAGTAACTA
ATTGGAAGAGTGCAGTATGTTAATGCACCTGCATATCCTTAA-GAATAAAATATCCAATAAAAGTTGACATTTGAAAGTA
CCCCTTGTGTTGTAAAGTAATCATTTTGATACAGAAGGAAC---------------------------------------
--------------------------------------------GTAATAATGAAGGCAAGCATGTAAAAAACTGGGGAA
AGTATTGTTCGTAACAGGTTATATGCAGCCCTACCGTCTACAGGAACGCATCAAAGCAAACTTCGGA
>chr3B_3
--ATCGCGGATAGATCTCCAGTGACTTGATAAAACACTGGCCCTTGAAATCTCTTTAGGAGGCAACTTTGACAAAATTGT
GCACATCACATCCTACGTCAACGGAATATAGATGCTTGAGATTACAAGTTATAGCTGTACTCGACTGTATATCAAAAAAA
GGGAAATTTGACATACATTTGGAAGGTCTCCCAATTTAACGTCTGAGCTCGCCTTCTTCTAGATTGAATTCCCATGGGTA
TGGTCTGATGATG-T-GCTTTGCGCATTTGATGGCTCCTCATCTGTAAAACTGAATATGAGAAGTCAGAGTTCCTCCAAG
ATTATATGATACTCCCTCTGTAAATTAAAATAAAAGCGTTTAGATCACTA------------------------GATATT
CACAAGTGTATTAACTGCTAGTAGTAGGCATTACTGTAGATAATCCGAGGAACTACTCCCTCCGTTTCATAATATAAGAA
TGTTTTTGGCACTCAGAGGGAGTAGTTGTTTGTCGTCGGTGCCAGCGCTTCGGTGCTTGGGAGGTCCGATTG--------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------ATGTCGGCTTTT
AACGGGACGT-GAGACGATTTGATTCGGCCAGGGC---------------------------------------------
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------------------------------TGGACTCGGATTCCTGGGCCCGATTTTAGAGAGGATAGCGAAGCGCGTTC
CGCTTCCCGGCCCAACCCTCTTTCCTTCCGCTTCTCGG-CCCACCCTCCATACAAATGGAAAACCCTAATAAGAAACCCT
AAGAAACCCTTCTCCCCCGCCACCGGCCACCACCCCGAC-------------------CACGAGCAAGACAACCGGACAA
CGGAAGCGGCGATGGGATGCACGGCGTCCACGCGACGTGCGGGGCGGGGCTCGCTCGTGTTCGAGGTCTCAGGGTACGGC
GGAGTTAGCCTCGACGTACAATCATCGGAAGTATTCACCGTCGGCGCTTACGACTGGCAGATTCGTTTCTATGAGGAAGG
AGTGTTTGGGCATTCCGGAGGCTATGTGGCGGTCTATCTCTTTTTAGTCAGCAAGAAGGCCAAGGTGAGGGCAACCTTCG
AGCTCAGTTTGGTGGACATCACTGGATCAACGCCGCCTCGTACGATGAGGACGGTCGCCGCAGAATTCGACTCTGGCGAC
CGGACGTGCTTCGGCCATCCCGAGTTCATGAGGAAGAGCGACCTCGAGGCGTCGCCTTACCTTCGCGGCGGCGATCGCCT
CACAATTGAGTGTACCATCACTATCTGCACGGAAG---------CGCCCAAATCATTTGTTGAGGTGCCGTTGCCGCCAT
CCGACATCACGGATCACCTCAGGAAGCTGTGGCAAGGGAAAGAGGGCACCGATGTCACCTTCGAGGTTCAAGGGGAGGCT
TTTCCTGCCCACAAGACAGTGCTCGCGATGCGGTCACCGGTGTTTAAGGCAGAGTTGTACGGTGCCTTGAGGGAAAATGA
TATGGGTCGCGTTATCATCGGCGACATGCAACCTGCAGTCTTCGAGGCCCTGCTCCATTTTATATACACCGATTCGTTGC
CCACCATGCATGATCTTTACCAAGATCAAGATGAGTACAAAGAGATTATTGGACATTTGCTTGTAGCCGCGGATCGCTAT
GCCATGGAAAGACTGAAGATCATATGTGAAAGCATCCTTTGCAAGAACATAGATTCGAAGACCGTGGTGACTACACTGCC
TTTGGCTGATCAGCATCACTGCAACAAGTTGACTGATGCTTGCATTGAATTTATTGCCTCTTTGGGTAAAGTGGATGATA
TAATAGCAAGCCAGGGATATGATGAGCTCAAAAGAACCTGTCCTTTGGCTTTACTGGAACTGTGGGAGAAGGCAACTAGG
CTGTACATGATATAGTCTTCATTTCACATTGGCATGTGTGTTAAGTCACATACATATCTTGCTACTTGTTTGATGAAGGA
TTAGTTTATTTTAATATATCTGAAGCTTTGGTGGAAAACAGTATTACTCTGCTAATGTTTTTCGTTTGTCAAGATGTTGC
ATACTTATCCTTTTAGCGCAAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAATTGTCTGTTCGAAAATTTTGTC
ATAGGTTTTAATTACCACACTACATGTGCAGGCTAGTGTATGCTACTCACTTCAATGATGATATCTGCCGTAACGAATAA
GCAGCAAAATGCGACAAGAGTGGGACAGGAGTGTGTTAATGTGATTATATGGGAACATTTCGTCATAATATGAAATTCGA
AACGGGAGAATGAATGCCACATTTTCGAACTC----GTGTTGTAAAATAATAGGGGTGCATTTGAAACAATAATTCTTGC
ACTGGAAGGTGTTCAATTTCCTTTGCCAGGTACTTTTCTGTTCTTGCATCCTCCAATTGGTTTCAGTTTTTATTTTACTT
ATTACCTGAAAAGTTGAGACTGAATCCATAAAAAGTTGACCCATCGGTAAGCTTTTAATTCTTTTACAAATATAAAATGA
AATAAGTAATCAATCTAACCTATAAAATGATTGAGTACCACCACATCATCCATCTATACTGTTATATAAACATCATC-GG
TACATCACAGTATTGGGCAACTGGCCTATATCATGCTATTACTTTGAATGAAACACATTTGTACTATATGACAGTAACTA
ATTGGAAGAGTGCAGTATGTTAATGCACCTGCATATCCTTGAGGAATAAAATATCGAATAAAAGTTGACATTTGAAAGTA
CCCCTTGTGTTGTAAATTAATCATTTTGATACAGAAGGAAC---------------------------------------
--------------------------------------------GCAATAATGAAG--AAGCATGTAAAAAACTGGGGAA
AGTATTGTTCGTAACAGGTTATATGCAGCCCTACCGTCTACAGGAACGCATCAAAGCAAACTTTGGA
>chr3A_20
-------------------AGTGACTTGACAAAACACCGGCCCTTGAAATCTCTTTAGGAGGCAACTTTGACAGAATTGT
TCACATCACATCCTGCGTCAACGGAATATAGATGCTTGAGATTACAAGTTATAGTTCTACTCAACTGTATATCAGAAAAA
GGGAAATTTGGCATACATTTGGAAGGCCTTCCAATTTAACGCGGGACCTCGCCTTCTTATAGATTGAATTCCCATGGGTA
TGGTTTGATGATG-TTGCTTTGCACATTTGATGGGGCCCCATTTGTAAAACTGAATATGGGAAGTCAGAGTTCCTCCAAG
ATTATATGGTACTCCCTCTGTAAACTACTATAAGAACTTTTACAGATCACTAAAGAAGGGAGTATTAACTAGTGGATATT
CACAAGTGTATTA-------------GGCATTACCGTGGATAATCTGAGGAACTAGTA----------------------
---------------------------GTTTGTCGTCGGTGCCAGCGCTTCGGTGCTTGGGAGGTCCAATTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------ATGTTGGCTTTT
AACGGGACGTCGAGACGATTTGAGGAATTTCCTATTTGACGCGCTTTGCGCCAAACTGCCGGCGCTTCGCACAGGCGAGC
GACCGTGCAGCGACACTATGGGCCGGCCCAGTTACGTGGATGACAACCCCAACTAGCCAGCCGGTTTTGTTTCTTTGACC
GGTTTTCTGTTTTTTCCTTCTGTTTTTGTTGCTTTTTCTTTTTTTTTTCTGTTTATTTTTCTTTTTTCTTTTCAAGGTTA
TTCTATCTTTTTTAAACTAAGTTCATAAAAAACGTTTGAAATTTCAAAGAATGGCTGTTTTTCAAAAAATGTTCATAAAT
TAAAAAAATGCTCGAGACTTTCAACAAATGTTCTTATTTAAAAAAATATTGTGAAATCATTTGTTCAAAATGTTCACAAC
TTTTCAAAAGATGTTCGGGCGGTACAAAACTAGGTCCCATTTTAAAAAATTGTTCGTGAATTGCCAAAAATGTTCATGTT
TTGATTATTTCGGAGTTTCAGAAAATATCCAAATTTCGTAAATTGTTCACAAGTTTCAAAAAATGTTCTTGTTTTCAAAC
TTTTTTCGTGAATTTCAAAATATGTTCGCGTCTTCAAATTTTGGTTTCTGCTTCTTTTTTGGTTTCTCTGTTTTTGATTC
TTTTTCTTTTCGTTTTTTCCTTTATGTTTCTTTTCTATTTTTTTTCTTTTATATTATTTTCAGAAAAAGTTTGGAATTTT
TGTAAAATGTTTGTGCGTTTATAAACATATCAGAATTCAAAATTTTAGTGTTTTAAAATTATGTTCATAAATTCAAAACT
TGTTCGTATTTAACAAAATTTGTTCGTGTATTAAAAAAATTGTTTTTAAAAGTTATTTTTATTTTCTGAAAACTGTTCAC
AAATTTCAAAAAAAAAATTTAGCTTATTAAAGATGATAAAATTGAAGGTAGTTTTTTTTTTAAATTTTGTTCATAATTTC
AAAAAATATTCGTGTATTAAAACAATTGTTTGTGTTTTTTTTAATGTTCCAAATGTTTCTGCTAAAAAAATACACAACTT
CTCAGAACTTGTACCGTATTTTAAAAAATGTTCATGTTTTCATTTTTTGGAGTTTCCAAAAATGTTCCCGTTTAAAAATG
TTCACAAATTTCAAATAAATGTTCGTGTTTTCAAATTTGTTCAGGAGTTTAAAGAATGTTTGCATTTGCCCAATTTTCTT
TTGGAATTTCAAAAATTGTTCCTGTTTTGGGAAAAATTGTTTGTGATTTCGAAAAATGTTCCTGCTTTTCTAAAAGAAAT
CATTTTTTAAGCAATTCCCCAATTTGAAAAGTGTTTGCATTCAGAAAACACCTAGTTTAAAATAATCTTTTAAAATGCTG
AAAGTAATTCGGATCTGCTGTGTGGGGTTGATTCTTAAAAACGGACGCTGCAAACTTGTCGGTAACGCGTGATAGGTCAG
TCGGTGGCCGCGCCTGATCTGTATCATGATGTACGAGGTTCGGTTCCCAGCTACGTCCAGAGAGCGGCGTATAGGACGTC
CCACGATTTGATTCGGTCCTAAGGAGGAATTCGACTTGGATTCCTGGGCCCGATTTTAGAGAGTATAGCGAAGCGCGTTC
CGCTTCCCGGCCCAACCCTCTTTCCTTTCGCTTCCCGGTCCAACCCTCCATACAAATGC-AAACCCTAATAAGAAACCCT
AATAAACTCTTCTCCCCCGCCACCGGCCACCACCCCGGCCACGAACAAGACAACCGGGCA-------------------A
CGGAGGCGGCGATGGGATGCACGGCGTCCACGTGACGTGCAGGGCGGGGCTCGCTCGTGTTCGAGGTCTCAGGGTACGGC
CGAGTTAGCCTCGACGTACAATCATCGGAAGTATTCACCGTCGGCTCTTACAACTGGCAGATTCGTTTCTATGAGGAAGG
AGTGCTTGGGCATTCCGGAGGCTATGTGGCGGTCTATCTCTTTTTAGTCAGCAAGAAGGCCAAGGTGAGGGCAACCTTCG
AGCTCAGTTTGGTGGACATCACAGGATCAACGCCGCCTCGTACGATGAGGACGGTCGCCGCAGAATTCGACTCTGGCGAC
CGAACGTGCTTCGGCCATCCCGAGTGCATGAAGAAGAGCAAGCTCGAGGTGTCGCCTTACCTTCACAG---CGATCGCCT
CACAATTGAGTGTGCCATCACTATCTGCACGGAAG---------CGCCCAAATCGTTTGCTGAGGTGCCGTTGCCGCCAT
CCGACATCACGGATCACCTCAGGAAGTTGTGGCAACGGAAAGAGGGAAGCGATGTCACCTTCGAGGTTCAAGGGGAGGCT
TTTCCTGCGCACAAGATAGTGCTCGCGATGCGGTCGCCGGTGTTTAAGGAAGAGTTGTACGGTGCCTTGAGGGAAAATGA
TATGGGTTGTGTTATCATCGGCGACATGCAACCTCTAGTCTTCGAGGCCCTGCTCCATTTTATATACACCGATTCGTTGC
CCACCATGGATGATCTTTACCAATATCAAGATGAGTACAAAGAGATTATTGGACATTTGCTTGTAGCCGCGGATCGGTAT
GCCATGGAAAGACTGAAGATCATATGTGAAAGCATCCTTTGCAAGAACATAGATGTGAAGACCGTGGTGACTACACTGGT
TTTGGCTGATCAGCATCACTACAACAAGTTGACTGATGCTTGCATTGAATTTATTGCCTCTTTGGGTAAAGTGGATGATA
TAATAGCAAGCCATGGATATGCTGAGCTCAAAAGAACCTGTCCTTTGGCTTTACTGGAACTGTGGAAGAAGGCAACTAGG
CTCTACATGATATAGTCTTCATTTCACATTGGCATGCATGTTAAATCACATACATATCTTGCTACTTGTTTGATGAAGGA
TTAGTTTATTTGAATATATCTGAAGCTTCGGTGAAG-ACAGTATTACTCTGCTAATGTTTTTCGTTTGTCAAGATGTTGG
ATACTTATCCTTT-------------------------------------------------------------------
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>chr3A_2194
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-------------TAGCGCAAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAATTGTCTGTTCGAAAATTTTGTC
ATAGGTATTAATTACTACACTACATGTGCAGGCTAGTGTATGCTACTCACTTCAATGATGATATCTGCCGTAACAATT--
---------------AAGAGTGGGCCAGGAGTGTGTTAATGTGATTATATGGGAACATTTCATCATAATATGAAATTCGA
AACGGGAGAATGAATGCCACATTTTCGAACTCTTGAGTGTTGTAAAACAATACTGCTGCATTTGAAACAATAATTCTTGC
ACTGGAAGGTGTTCAATTTCTATTTTCATGTACTTCTCTGTTCTTGCATCCTCCAATTGGTTTTCGCTTTTATTTTAC--
-TTACCTGAAAAGTTGAGACTGAATCCATAAGCAGTTGACCGATCGGTAAGCTTTTAATCATTTTATAAATATAAAATGA
AATAAGTAATCAACCTAACCTATGGAATAATTGAGTACCACCACATCATCCATATATACTGTTATATAAACATCGTTGGG
TACATCATAGTATTGAGCAATTGGCCTATATCAGGCTATTACTTTGAATGAAACACATTTGTACTATTTGACAATAACTA
ATTGGAAGATTGCAATTTGTTAATGCACCTGCATCTCCTCGAGGAATAAAATGTCCAATAAAAGTTGACATTTGAAAGTA
CCCCTTGTATTGTAAATTAATCATTTTGATACAGAAGGAACATACTCCCTTTGTAAACAAATATAAGAGCATTTAGATCA
CTACTTTAGGGATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTAGTAATGAAGGCAAGCATGTAAAAAACCGGGGAA
AGTATTGTTCATAACAGGTTATATGCAGCCCTACCGTCTACAGGAACACATCAAAGCAAACTTAGGA
>chr3A_2194
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-------------TAGTGCAAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAATTGTCTGTTCGAAAATTTTGTC
ATAGGTATTAATTACTACACTACATGTGGAGGCTAGTGTATGCTACTCACTTCAATGATGATATCTGCCGTAACAATT--
---------------AAGAGTGGGCCAGCAGTGTGTTAATGTGATTATATGGGAACATTTCATCATAATATAAAATTCGA
AACGGGAGAATGAATGCCACATTTTCGAACTCTTGAGTGTTGTAAAACAATACGGCTGCATTTGAAACATTAATTCTTGC
ACTGGAAGGTGTTCAATTTCTATTGTCATGTACTTCTCTGTTCTTGCATCCTCCAATTGGTTTCCGCTTTTATTTTAC--
-TTACCTGAAAAGTTGAGACTGAATCCATAAGCAGTTGACCAATCGGTAAGCTTTTAATCATTTTATAAATATAAAATGA
AATAAGTAATCAACCTAACCTATGGAATAATTGAGTACCACCACATCATCCATATATACTGTTATATAAACATTGTTGGG
TACATCACAGTATTGAGCAATTGGCCTATATCAGGCTATTACTTTGAATGAAACACATTTGTACTATATGACAATAACTA
ATTGGAAGATTGCAGTTTGTTAATGCACCTGCATATCCTCGAGGAATAAAATGTCCAATAAAAGTTGACATTTGAAAGTA
CCCCTTGTATTATAAATTAATCATTTTGATACAGAAGGAACATACTCCCTTTGTAAACAAATATAAGAGCATTTAGATCA
CTACTTTAGGAATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTAGTAATGAAGGCAAGCATGTAAAAAACCGGGGAA
AGTATTGTTCATAACAGGTTATATGCAGCCCTACCGTCTACAGGAACACATCAAAACAAACTTCG--
>chr3A_2200
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-------------------AAATGGTATTGTTGCTAAACAATATATATGAGTGTTTAATTGTCTGTTCAAAAATTTTGTC
ATAGGTATTAATTACTACACTACATGTGCAGGCTAGTGTATGCTACTCACTTTAATGATGATATCTGCCGTAACAATT--
---------------AAGAGTGGGCCAGGAGTGTGTTAATGTGATTATATGGGAACATTTCATCATAATATGAAATTCGA
AACGGTAGAATGAATGCCACATTTTCGAACTCTTGAGTGTTGTAAAACAATACGGCTGCATTTGAAACAATAATTCTTGC
ACTGGAAGGTGTTCAATTTCTATTGTCATGTACTTCTCTGTTCTTGCATCCTCCAATTGGTTTCTGCTTTTATTTTAC--
-TTACCTGAAAAGATGAGACTGAATCCATAAGCAGTTGACCGATCGGTAAGCTTTTAATCATTTTATAAATATAAAATGA
AATAAGTAATCAACCTAACCTATGGAATAATTGAGTACCACCACATCATCCATATATACTGTTATATAAACATCGTTGGG
TACATCACAGTATTGAGCAATTGGCCTATTTCAGGCTATTACTTTGAATGAAACACATTTGTACTATATGACAATAACTA
ATTGGAAGATTGCAGTTTGTTAATGCACCTGCATATCCTCGAGGAATAAAATGTCCAATAAAAGTTGACATTTGAAAGTA
CCCCTTGTATTATAAATTAATCATTTTGATACAGAAGGAACATACTCCCTTTGTAAACAAATATAAGAGCATTTAGATCA
CTACTTTAGGAATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTAGTAATGAAGGCAAGCATGTAAAAAACCAGGGAA
AGTATTGTTCATAACAGGTTATATGCAGCCCTACCGTCTACAGGAACACATCAAAACAAACTTCGGA
>SNPs
SS-----------S----------------------------------------------------S-----------S-
------------------S-----------------SS------------------------------------------
--S----------S-------S-----------------S-----------S----------------------------
-------------S-------------------S-----------------S----------------------------
--------------------------------------------------------------------------------
----------------SS--------------------------S-----------------------------------
-----------------------------------------------S-------------S----------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
---S------------S---------------------------------------------------------------
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-----------------------------------------------------------------SS-------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------S-------------------S---------------
--------------------------S-----------------------------------------------------
---------------------------------------------------------------------------S----
---------------------------------------------------------S---------S------------
--------------------------------------------------------------------------------
-----------------------------S-----SSSSSSSSS--S-S-------------------------------
--------------------------------------------------------------------------------
-----------------S------------------------------------S-------------------------
------------------S--------------------------------------------------------S----
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-------------------S--S--------------------S-------------------S----S-----------
--------------------------------------------------------------S----S----S-SS----
-------------------------------------------------S---S---S----------------------
-------------------------------------------------S---------------S--------------
----------S----------------------------------------S----------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
-S--------------------------------------S-----------S---------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>forward_652
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------------------------------------------------------------------------CAACCAAA
TGTGTCGGCCAG--------------------------------------------------------------------
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>reverse_3078
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-------------------------------------CCGGTCTCGTCGAAATCGTT-----------------------
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>forward_793
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-----------------------------------------------------GCCGTGTTCTCCACCAGATT-------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>reverse_3255
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CTGTACGGTGCCTTGAGGG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>forward_3079
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ACTATCTGCAAGGAAGCGCC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>reverse_3970
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GTTCGATGGTGATATCTGCCG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
