>input_sequence_62547
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--------ATGGCGTCCTCTCCACAATCCTCCTCCACCTTTGC---ACCCAAAGCCGACGACGAGGCAGCGTCCCACAAA
GAAATCTATGACCAGCTCCTAGAGGTCGTGTCTACCAACCCGACGGT------GCCCAGCGGCATCGGCCGCCCGTACAC
CCACCACCCAGACGGCTGGTACGCGTTCACGCCGGCCGTCGTGAACGCCATGGTCATCAAGCGGCACCTCAAGGCGCGCG
ACACCGACGTCTTCCTCGCCACCTTCCCCAAGTCCGGCACCACCTGGCTCAAGGCGCTCCTGTTTGCGACCCTCCGCCGC
ACCGCGGACGGGCCAGCACTCGCGCCGCTCGCAGCCCACAGCCCCCACCAGCTCATCCCTTTCCTCGAGTTCCAGGTTTT
CGCCAACGGCCGGATCCCAGACCTGAGCTCCCTCCCTGCGCCGCGGCTCCTGATGACGCACATCCCGTCCCGGTCGCTGC
CGGAGTCCGTGGCCGCCTCCGGCTGCAAGGTGGT-------GTACCTGTGCCGGGACCCCAAGGACTGCTTCGTGTCGCT
CTGGCACTTCTGGAACCGGTTCGCGCCGTCGCCGTGGGACCTCGACGAGGCGCTCCAGCAGTTCTGCGACGGCGTCTCGC
TGTTCGGGCCTTTCTGGGAGCACGTGCTGGGCTACTGGCGCTGGCATGTGGAGAGGCCGGAGCAGGTTCTCTTCCTGACC
TACGAGGAGCTCGCCGCCGACACGCTCGGCCAGCTGAGGCGCCTCGCTGCGTTTCTCGGGCGCCCGTTCACGTCAGAGGA
GCGGGAAGCCAGGGTGGACAGGGAGATCGTGGAGGCATGCGCCATGGAGAGCCTGGCGGGACTGGAGGTGAACCGCTCCG
GGAAGACGGACATGACCGAGAACTCAGTGGCGAACAACATATTCTTCCGGCGCGGCGTCGTTGGCGACTGGAAGAACCAC
CTGACGCAGGAGATGGCCAGAAGGATCGATGAGATCAGCGAGAGCAAGTTCAGAGGATCGGGGTTGGCGTTGACACCGGC
AACCGCAGATCAGAACTAG-------------------------------------------------------------
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-------------------------------
>chr3B_1_TraesCS3B01G420100
GCTCGCTCCCCCGGTCACCGCCAAGCATTGCGATGCCGGTCGCAAACACCATTGTCACCCCTCGGGTCTTAAGAGTTGGT
TGCAGCAATTGACGACGGCGGTCGTAGAAAACGCCATTGCTGGTTGTAGCATTGGCCTCACCCTGGTCGCTAGCGTCGCA
ACTTTTATAGATGCTGGTTGCAGCTCTGCCGATGGCCGGTTCCAACTTCTGTTGATGCCCGTTGTAGCTTTGCTTGAACA
CCAACCGTAGCAAATCGCCGTTGT-------------------------------------CGGTTGTAGTATTTCCTGA
CAACGGTTCCAGCTTTGCCGCTGGCCTGTTCCAGCAAATGTAGACACGGTTCCAGCACGACGTCAGTGTGGTTCCAGCAT
CTCGTCGTTGGAGCACCCAGAGACATCAGTTCCAGCAAAAACCTTGTCTAAAAAAACGTGTGCGAAAATCGATGGCGACG
CCGACTGCGCACGCCGGCCACATCTTGGCAAGGGAGCCGCGTCTTGGCAGGGGGGATGTGAGAGCTCGTGCATTGGAGAT
GATGGAGCGTGATGCACCGTGCGGGAGAAAGAAGAAGAGGCATGTGATGGAGAATTGTTAAGAGGGCGTTGAAGATAAGG
ACAAGGGAAAAGTGTGGGCCGACATCCATCGTTCGATACCACTTAAATCGACAGCTCGTGCTCGACCGGCCGAAGTTTCG
GCCGGTTCGCTCGCTACAAACATTACCTTTTATATATACTCAAAGGAAAAATCTAGACTATCTTAAATAGTTTTTTATAG
TTGGCACAAACGGGAATAATGGTGGGGAAACGGTAGGAGGTGGTGGTTGGATGACGCGAGACAAACACAACGGTAGAAGG
AGTCCCGCCAATTATAATTGATGAGAGAGGAGATATTAGAAAACAAGCGAAGGAACGACAATAAC-ACAAGATCTTTATA
AGCAGGAAATATCTGGGCATTCTCGTTGCAGAAAGTGGAGCGCTGCACAAACGGGCCTTCACGAATCAC----------A
CAAATTTCATGGCGTCCTCTCCACAATCCTCCTCCACCTTTGC---ACCCAAAGCCGACGACGAGGCAGCGTCCCACAAA
GAAATCTATGACCAGCTCCTAGAGGTCGTGTCTACCAACCCGACGGT------GCCCAGCGGCATCGGCCGCCCGTACAC
CCACCACCCAGACGGCTGGTACGCGTTCACGCCGGCCGTCGTGAACGCCATGGTCATCAAGCGGCACCTCAAGGCGCGCG
ACACCGACGTCTTCCTCGCCACCTTCCCCAAGTCCGGCACCACCTGGCTCAAGGCGCTCCTGTTTGCGACCCTCCGCCGC
ACCGCGGACGGGCCAGCACTCGCGCCGCTCGCAGCCCACAGCCCCCACCAGCTCATCCCTTTCCTCGAGTTCCAGGTTTT
CGCCAACGGCCGGATCCCAGACCTGAGCTCCCTCCCTGCGCCGCGGCTCCTGATGACGCACATCCCGTCCCGGTCGCTGC
CGGAGTCCGTGGCCGCCTCCGGCTGCAAGGTGGT-------GTACCTGTGCCGGGACCCCAAGGACTGCTTCGTGTCGCT
CTGGCACTTCTGGAACCGGTTCGCGCCGTCGCCGTGGGACCTCGACGAGGCGCTCCAGCAGTTCTGCGACGGCGTCTCGC
TGTTCGGGCCTTTCTGGGAGCACGTGCTGGGCTACTGGCGCTGGCATGTGGAGAGGCCGGAGCAGGTTCTCTTCCTGACC
TACGAGGAGCTCGCCGCCGACACGCTCGGCCAGCTGAGGCGCCTCGCTGCGTTTCTCGGGCGCCCGTTCACGTCAGAGGA
GCGGGAAGCCAGGGTGGACAGGGAGATCGTGGAGGCATGCGCCATGGAGAGCCTGGCGGGACTGGAGGTGAACCGCTCCG
GGAAGACGGACATGACCGAGAACTCAGTGGCGAACAACATATTCTTCCGGCGCGGCGTCGTTGGCGACTGGAAGAACCAC
CTGACGCAGGAGATGGCCAGAAGGATCGATGAGATCAGCGAGAGCAAGTTCAGAGGATCGGGGTTGGCGTTGACACCGGC
AACCGCAGATCAGAACTAGTGGGTCCAGGACGACAGATGCTATATTAATAAGCACAACTTGCACAACATTTGTCTTTTTC
TTTTGAGAGAGAGATTTCGC--ATACCATTAAACAAATGTCAAATTACAA-ACGAAATCGTGAAAATCACGAGAAAGAAA
GAGAAAAAACATATGCCCGAGAACATATGCAAGAAAACTTAATTGAAGAAGATTTTTGCAACCGTCATCTTCACCACTTG
TCGTCTTCGGAAACGAAGAAGCACCATCGTCCATGAGGACTTTGTGAGCCGAAGAAGAGGCCTACCACCGGCAAGGCCAT
TATCGTTGTGGCGCGTCAACCGGGGATCATCCTCGTGCTTCTCGAAACCCAGATCCGTTGCATACCGTCGATGTCGTCGA
GCTAGAACACCGGAACCGCCACCCACTAGCCTCCAACCTTGTTCTTGGACCTTTATCTTCACCCAAACAAAGGCGACACC
ACACGAGATGAGATCTTCCATAGACACAAT-AAACACCGCCAAATCCATCGCACCAAGAAAACGATGGAATATGGTTCCC
ACAGATCCCTCAATTTCACCACTGAGGATGTCATCGAGAT-GGGGCTGAGATCGTGGAAATTTTATTCCAAACACGAGCG
TCACCGCCATCCAAACATCGCCATGAGACGCATTAAACTTAACCCTAACTACAGCCGAGGCAGAGAGCCGGGGTTCCC-C
ACCCATCTGTCGCCGGAGTGGCGATCGGAGGGCAAGAGAACCCGCGGCCTCGCTGGCAGAGTAATATATTGTACTATGAA
TGTCAGTCA-----------------------------------------------------------------------
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-------------------------------------------------------TGATCAGCAAACATGACAAGGGAAA
TAACAGAAGTGTTACCATTTTTATTTTATTTTTTAGAGAGAAAGAAGTGTTACCATACAATAGTATACATGAACATCGTT
ATCACGTGGTGTCTTCAGTACTGTATCAATAGATCACAACTTAGCAGCAGAGAGTGATTATCTTGTTGCCTGCCCCGCGT
GAGTTTTCATCCTTCCAGTCGTCTCATGCTC
>chr3D_1
GCTCGCTCCCCCGGTCACCGCCAAGCACTGCCATGCCGGTCGCAAACACCATTGTCACACCTCGGATCTTAAAAATTGGT
TGCAGCAATTGACAACGACAGCAGTAGCAAATGCCATTGCCGGTTGTAGCATTGGCCTCACCCTGGTCGTCGGCGTCGCA
GCTTTTATAGATGCTGGTTGCAGCTCTGCCGGTGGCCGGTTCCAACTTCTGTTGATGCCCGTTGTAGCTTTGCTCGAACA
CCAGCCGTAGCAAATCGCCGTTGCCGGTTGTAGTATTTTCCAACAACGGTTCCAACTCGGCCGGTTGTAGTATTTCCCAA
CAACGGTTCCAACTCGGCCGCTGGCCTGTTCCAGCAAATGTAGACACGGCTCCAGCACGACGTCAGGGTGGTTCCAACAT
CTCGTCGTTGGAGCACCCAGAGACATCAGTTCCAGCAAAAACCTTGTCTAAAAAAACGTGTGCGAAAATCGATGGCGACG
CCAGCTGCGCACGCCGGCCACATCTTGGCAAGGGAGCCGCGTCTTGGTAGGGGAGATGCGAGAGCTCGTGCGCCGGAGAT
GATGGAGCGCGATGCACTGTGCGGGAGAAAGAAGAAGAGACATGTGATGGAGAATTGTTGAGAGGGCGTTGAAGGTAAGG
ACAAGGGAAAAGTGCGGGCCGAGATCCATTGTTCAATCCCACTTAAATCGACAGCTCGTGCTCGACCGGCCGAAGTTTCA
GCCAGTCCCCTGGCTACAAACATTATCCTTTATATATACTCAAAAGAAAAATCTAGACTATCTTAAATAGTTTCTTATAG
TTGGCACAAACGGGAATAATGGTGGGGAAACGGTAGGAGGTGGTGGTTGGATGATGCGAGACAGACAAAACGGTAGAAGG
AGTCCCGCCAATTATAATTGATGAGAGAGGGGATATTAGAAAACAAGTGAAGGAACGACAAGAAC-ACAAGATCTTTATA
AGCAGGAAATATCTGGGCATTCTCGTTGCAGAAAGTGGAGCGCTGTACAAACGTGCCTTCACGAATCAC----------A
CAAATTTCATGGCGTCCTCTCCACAATCCTCCTCCTCCTCTGC---ACCCAAAGCCGACGACGAGGCAGCGTCCCACAAA
GAAATCTATGACCAGCTCCTAGAGGCCGTGTCCACCTACCCGACGGC------GCCCAGCGGCATCGGCCGCCCATACAC
CCGCCACCCGGACGGCTGGTACGCGTTCACGCCGGCCGTCGTGAACGCCATGGTCATCAAGCGGCACCTCAAGGCGCGCG
ACACCGACGTCTTCCTCGCCACCTTCCCCAAGTCCGGCACCACCTGGCTCAAGGCGCTCCTGTTTGCGACCCTCCGCCGC
ACCGCGGACGGCCCAGCACTCGCGCCGCTCGCAGCCCACAGCCCCCACCAGCTCATCCCTTTCCTTGAGTTCCAGGTCTT
CGCCAACGGCCGGATCCCTGACCTGAGCTCCCTCCCCGCGCCGCGGCTCCTGATGACGCACATCCCGTCCCGGTCGCTGC
CGGAGTCCGTGGCAACCTCCGGCTGCAAGGTGGT-------GTACCTGTGCCGGGACCCCAAGGACTGCTTCGTGTCGCT
CTGGCACTTCTGGAACAGGTTCGCGGCGTCGCCGTGGGACCTCGGCGAGGCGCTCCTGCAGTTCTGCGACGGCGTTTCGC
TGTTCGGGCCATTCTGGGAGCACGTGCTGGGCTACTGGCGCTGGCACGTGGAGAGGCCGGAGCAGGTTCTCTTCCTGACC
TACGAGGAGCTCGCCGCCGACACGGTCGGTCAGCTGAGGCGCCTCGCTGCGTTTGTCGGGTGCCCGTTCACGGCAGAGGA
GCGGGAAGCCAGGGTAGACAGGGAGATCGTGGAGGCATGCGCCATGGAGAGCCTGGCGGGACTAGAGGTGAACCGGTCCG
GGAAGACCGCCATGACCGAGACGTCAGTGGCGAACAACATATTCTTCCGGCGCGGTGTCGTTGGCGACTGGCAGAACCAC
CTGACGCCGGAGATGGCGAGAAGGATCGATGAGATCACCGAGAGCAAGTTCAGAGGATCGGGGTTGGCGTTAACACCGGC
AACCGCAGATCAGAACTAGTGGGTTCAGTACAACAGATGCTATATTAATAAGCACAACTTGCACAGTATTTCTA------
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-------------------------------------------------------------TAAAAAATTGTACTATGAA
CGTCAGTCATGATC------------------------------------------------------------------
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-------------------------------------------------------------AGTATACATGAACATCGTT
ATCACGTGGTGTCTTCGGTACTAGTGATC---------------------------------------------------
-------------------------------
>chr3A_1
GCTCGCTCCCCCGGTCACCGCCAAGCACTGCCATGCCGGTCGCAAACACCATTATCACCCTTCGGATCTTAAAAACTGGT
TGCGGCAATTGACGACGACGGTAGTAGCAAATGCCATTGCCGAGTGTAGCATTGGCCTCACCCTGGTCGCCAGCGTTGCA
GCTTTTATAGATGTTGGTTGCAGCTCTCCCGGTGGCCGGCTCCAACTTCTGTTGATGCCCGTTGTAGCTTTGCTCGAACA
CTAGCCGTAGCAAACAGCCGTTGT-------------------------------------CGGTTGTAGTATTTCCCGA
CAACGGTTAAAGCTCTGCCGCTAGCCTGCTCCAGCAAACGTAAAAACGGTTCCAGCACGACGGCAGGGTGGTTCCCGCAT
CTCGTCGTTGGAGCACCCGGAGACATCAGTTCCAGGAAAAACCTTGTCTAAAAAAGCGTGTGCGAAAATCGATGGCGACG
CCGGCTGCGCAT----GCCCCATCTTGGCAAGGGAGATGCGTCTTGGCACGGGAGATGCAAGAGCTCGTGTGTCGGAGAA
GATAGAGCGTGATGCACTGTGCGGGAGAAAAAAAAAGAGACATGTGATGGAGAATTGTTGAGAGGGCGTTGAAGATAAGG
ACAAGGGAAAAGTGCGGACCGAGATCCATCGTTCGATCCCACTTAAATTGACAGCTCGTGCTCGACCGGCCGAAGTTTCG
GCCGGTCCACTGGTTACAAACATTACCGTTTATATATACTCAAAAGAAAATTCTAGACTATCTTAAACAGTTTCTTATAG
TTGGCACAGACGGGAATAATGGTGGGGAAACGGTAGGAGGTGGTGGTTGGATGATGCGAGACAGACAAAACGGTAGAAGG
ACTCCCGCCAATTAAAATTGATGAGAGAGGGGATATTAGAAAACAAGTGAAGGAACGACAAGAAC-ACAAGATCTTTATT
AGCAGGAA-CATCTGGGCATTCTCGTTGCATAAAGTGGAGCGCTGTACAAACGGGCCTTCACGAATCAC----------A
CAAATTTCATGGCGTCCTCTCCACAA---TCCTCCTCCTCTGC---ACCCAAAGCCGACGACGAGGCAGCGTCCCACAAA
GAAATCTATGACCGGCTCCTAGAGGTCGTGTCT-----------------------------------------------
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-------------------------------
>chr3A_756
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------------------------------------------------------------------------TTTGATAG
TTGGCACGAATGGGAATAATGGTGGA-AAATGGTAGAAGGAGGTGGTTGGATGATGAGGCATGCCAACACGGT----AGG
AGTCCCACCTATCAAAGTTGAGAGGGCCAATTTGATAAAAGAAAAGGTTGAGAGGGCCAGAGAGGGACACGATCTTTATA
AGCAGAAAAGATCTGGGCATTCTCGTTGCAGAAAGTAGAGCGCTGTACAAACGGGCCTTCACGAATCACGAGATATCCAA
CAAATTTCATGGCGTCCTCTCCACAA---TACTCGTCCTCGGC---GCCCAAAGCCGACGACGAGGCGGTGTCCCACGAA
GAAATCTACGACCAGCTCCTACAGGTCGTGTCCACCTACCCGACGGC------GCCCAGCGGCATCGGCCGCCCGTACAC
CCACCACCCGGACGGCTGGTACGCGTTCACGCCGGCCGTCGTGAACGCCATGGTCATCAAGCGGCACCTCAAGGCGCGCG
ACACCGACGTCTTCCTCGCCACCTTTCCCAAGTCCGGCACCACCTGGCTCAAGGCGCTCCTGTTCGCGACCCTCCGCCGC
ACCGCGGACGGGCCAGCACTCGCGCCGCTCGCAGCCCACAGCCCCCACCAGCTCATCCCTTTCCTGGAGGTCCAGGTCTT
CAGCAACGGCCGGATCCCCGACCTGAGCTCCCTCCCTGCGCCGCGGGTCCTGATGACGCACATCCCGTCCCGGTCGCTGC
CGGAGTCCGTCACCGCCTCCGGCTGCAAGGTGGT-------GTACCTATGCCGGGACCCCAAGGACTGCTTCGTGTCGCT
CTGGCACTTCTGGAACCGGTTCACGCCGTCGCCGTGGGGCCTCGGCGAGGCGTCCCAGCAGTTCTGCGACGGCGTCTCGC
TGTTCGGGCCTTTCTGGGAGCACGTGCTGGGCTACTGGCGCTGGCACGTGGAGAGGCCGGAGCAGGTGCTCTTCCTGACC
TACGAGGAGCTCGCCGCCGACACGGTCGGTCAGCTGAGGCGCCTCGCTGCGTTTGTCGGCTGCCCGTTCACGGCAGAGGA
GCGGGAGGCCAGGGTAGACAGGGAGATCGTGGAGGCATGCGCCATGGAGAGCCTGGCGGGACTAGAGGTGAACCGGTCCG
GGAAGACCGCCATGACCGAGACGTCAGTGGCGAACAACACATTCTTCCGGCGCGGCGTCGTTGGCGACTGGAAGAACCAC
CTGACGCCGGAGATGGCGAGAAGGATCGATGAGATCAGCGAGAGCAAGTTCAGAGGAACGGGGTTGGCGTTGACACCGGC
AACCGCAGAACAGAACTAGTGGTTTCATGATGGCAGATGCTATATAAATAAGGACCACTTGCACAACATTTCTA------
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-------------------------------------------------------------TAAAATATTGTATTATTAA
TGTCAGGCATGATCATTTTTTTTTAAACCCGAGAGCTTTTATTCAACAAAAGAACTCCTGACATCATCAATAGGCTGGTG
AGCAGGAAGAAAGGTCTAGAGTCAGTACAACTCTTGATCACCATCAGCGTGCAAGTATGTTTTGCATAGATGGACCGGTA
CATTGGCTGCTCCGTTTACATGTTAAATATCAAAATAAGAAAAGAGATAGCTAGCTCTTTAATTTCTAGAAGTACTAGTG
CCATCACAAAAAAACTGTTATGGCGAATTTTCCAGAGATTAACAATCTTCAAGCTGTCTGTCTTCATTATCACATATGAG
AAACCGCGCAGATTTGCAAAGATAACACCATCACGAAGCGTCGGGCATGATCACTTGATCAGCAAACATAAGAGGGGAAA
TAAT----------------------------------------AAGTGTTACCATTCAGTAGTATACATGAACATCGTT
ATCACGTGGTGTCTCCACTACTGTGTCAATAGCTCACAACTTAGCAGCA-------------------------------
-------------------------------
>chr3D_909
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------------------------------------------------------------------ACAAGATCTTTATA
AGCAGAAAACATCTGGGCATTCTCGTTGCACAAAGTAGAGCGCTGTACAAACGGGTCTTCACGAACCACGAGACATCCAT
CAAATTTCATGGCGTCCTCTCCACAA---TCCTCCTCCTCTGC---ACCCAAAGCCGACGACAAGGCAGCGTCCCACAAA
GAAATCTACGACCAGCTCCTAGAGGTCGTGTCCACCTACCCGACGGC------GCCTAGCGGCATCGGCCGCCCGTACAC
CCACCACCCAGACGGCTGGTACGCGTTCACGCCGGCCGTCGTGAACGCCATGGTCATCAAGCGGCACCTCAAGGCGCGCG
ACACCGACGTCTTCCTCGCCACCTTCCCCAAGTCCGGCACCACCTGGCTCAAGGCGCTCCTGTTCGCGACCCTCCGCCGC
ACCGCGGACGGGCCCGCACTCGCGCCGCTCGCAGCCCACAGCCCCCACCAGCTCATCCCTTTCCTCGAGGTCCAGGTTTT
CAGCAACGGCCAGATCCCCGACCTGAGCTCCCTCCCCGCGCCGCGGCTCCTGATGACGCACATCCCGTCCCGGTCGCTGC
CGGAGTCAGTCGTCGCCTCCGGCTGCAAGGTGGT-------GTACCTATGCCGGGACCCCAAGGACTGCTTCGTGTCGCT
CTGGCACTTCTGGAACCGGTTCGCGCCGTCGCCGTGGGACCTCGGCGAGGCGTTCCAGCACTTCTGCGACGGCGTCTCGC
TGTTTGGGCCTTTCTGGGAGCACGCACTTGGCTACTGGCGCTGGCACGTGGAGAGGCCGGAGCAGGTTCTCTTCCTGACC
TACGAGGAGCTCGCCGCCGACACGATCGGCCAGCTGAGGCGCCTCGCGGAGTTTGTCGGGCGCCCGTTCACGGCAGAGGA
GCGGGAAGCCAGGGTGGACAGGGAGATCGTGGAGGCATGCGCCATGGAGAGCCTGGCGGGACTGGAGGTGAACCGCTCCG
GGAAGACCGCCATGATCGAGGACTCAGTGGCGAACAACATATTCTTCCGGCGCGGCGTCGTTGGCGACTGGAAGAACCAC
CTGACGCCGGAGATGGCGAGAAGGATCGATGAGATCACCAAGAGCAAGTTCAGAGGATCGGGTTTCGCGTTGACACCGGC
AACCGCAGATCAGAACTAGTGGGTTCATGA--------------------------------------------------
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-------------------------------
>chr3B_927
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----GGAAACATCTGGGCATTCTCGTTGCAGAAAGTAGAGCGCTGTACAAACGGGCCTTCACGAACCAAGAGACATCTAT
CAAATTTCATGGCGTCCTCTCCACAA---TCCTCCTCCTCTGC---ACCCAAAGCCGACGACAAGGCAGCGTCCCACAAA
GAAATCTACGACCAGCTACTAGAGGTCGTGTCCACCTACCCGACGGC------GCCTAGCGGCATCGGCCGCCCGTACAC
CCACCACCCAGACGGCTGGTACGCGTTCACGCCGGCCGTCGTGAACGCCATGGTCATCAAGCGGCACCTCAAGGCGTGCG
ACACCGACGTCTTCCTCTCCACCTTTCCGAAGTCCGGCACCACCTGGCTCAAGGCGCTCCTGTTTGCGACCCTCCGCCGC
ACCGCGGACGGGCCAGCGATCGCGGCGCTCGCAGCCCACAGCCCCCACCAGCTCATCCCTTTCCTCGAGGTCCAGGTTTT
CAGCAACGGCCGGATCCCAGACCTGAGCTCCCTCCCTGCGCCGCGGCTCCTGATGACGCACATCCCGTCCCGGTCGCTGC
CGGAGTCCGTGGCCGCCTCCGGCTGCAAGGTGGT-------GTACCTGTGCCGGGACCCCAAGGACTGCTTCGTGTCGCT
CTGGCACTTCTGGAACCGGTTCGCGCCGTCGCCGTGGGACCTCGGTGAGGCGCTCCAGCAGTTCTGCGACGGCGTCTCCC
TGTTCGGGCCTTTCTGGGAGCACGTGCTGGGCTACTGGCGCTGGCATGTGGAGAGGCCGGAGCAGGTTCTATTCCTGACC
TACGAGGAGCTCGCCGCCGACACCCTCGGCCAGCTGAAGCGGCTCGCTGCGTTTCTCGGGCGCCCGTTCACGTCAGAGGA
GCGGGAAGCCAGGGTAGACAGGGAGATCGTGGAGGCATGCGCCATGGAGAGCCTGGCGGGACTGGAGGTGAACCGCTCCG
GGAAGACGGACATGACCGAGTCTTCAGTGGCGAACAACATATTCTTCCGGCGCGGCGTCGTTGGCGACTGGAAGAACCAC
CTGACGCCGGAGATGGCTAGAAGGATCGATGAGATCACCGATAGCAAGTTCAGAGGATCGGGGTTGGCGTTGACGCCGGC
AACCGCAGATCAGAACTAGTGGGTTCATGATGGCAGATGCTATATAAATAAGGACGACTTGCGCAACATTTTTA------
--------------------------------------------------------------------------------
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-------------------------------------------------------------TAAAATATTGTACTATTAA
TGTCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------GGCATGATAACTTGATCAGCAAACATGCGAAGGGAAA
TAAC--------------------------------------AGAAGTGTTACCATACAGTAATATACATGAACATCGTT
ATCACGTGGTGTCTTCACTAATGTGTCAATAGCTCGCAACTTAGCAGCA-------------------------------
-------------------------------
>chr5A_994
--------------------------------------------------------------------------------
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-AAATTTCATGGCGTCCTCTCTCCCA---TCCTCGTCGTCGTCTTTACCCAAAGCCGACGACGAGGCAGCATCCAACCAA
GAAATTTACGACCAACTCCGAGAGGTCGTGTCCACGTACCCGGCGGCTCCGAGGCTTAGCGGCATCGGCCGCCCATACGT
CCGCCACCCGGACGGCTGGTACGCGTTCACGCCGGGGGTGCTGAACGCCATGGTGATCAAACGGCACCTCGAGGCGCGCG
ACACCGACGTCCTCCTCGCCACGTTCCCCAAGTCTGGCACTACCTGGCTCAAGGCGCTCCTGTTCGTGGCCCTCCACCGC
AACGCCGACGGGCGCGACCGT------CTCGCGGCCCACAGCCCCCACCAGCTCGTCCCATTCCTGGAGGCCCAGGTCTT
CACCAACGGCCGGATCCCCGACCTGAGCTCCCTCCCGGCGCCGCGGCTGCTGATGACGCACGTCCCGTCCGTGCCGCTGC
CGGAGTCCGTGGCCGCATCCGGCTGCAAGGTGGT-------GTACCTGTGCCGGGACCCCAAGGACTGCCTCGTGTCGCT
CTGGTACTTCTGGAAGGGGCTCGCGCCCGCACCGTGGGACCTGGGCGAGGCGTTCCGGCAGTTCTGCGACGGCGTGTCGC
TGTTCGGGCCGTTCTGGGAGCACGCGCTGGGGTACTGGCGCTGGCACTTGGAGAGGCCGGCGCAGGTGCTGTTCCTGACC
TACGAGGAGCTCGCCGCGGACACGCTCGGCCAGCTGAGGCGCCTCGCGGCGTTCGTCGGGCGCCCGTTCACGGCGGAGGA
GCGGGAGGCGGGGGTGGACAGGGGGATCGTGGATGCCTGCGCCATGGAGAGCCTGGCTGGGCTGGAGGTGAACCGGTCTG
GGAAGGCCGACATGGCCGAGTTGTCGGTGCCCAACAGCGTTTTCTTCAGGCGCGGCGTCGTCGGGGACTGGAAGAACCAC
CTGACGCCGGAGATGGCGAGGAGGCTCGATGAAATCACCGAGAGCAAGTTCAGGGGCTCTGGCTTGGTGTTGCCACGGGC
AACCACACATCTGAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr3A_1097
--------------------------------------------------------------------------------
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---------------------------GTGTCCACCTACCCGACGGC------GCCCAGCGGCATCGGCCGCCCGTACAC
CCACCACCCAGATGGCTGGTACGCGTTCACGCCGGCCGTCGTGAACTCCATGGTCATCAAGCGGCACCTCAAGGCGCGCG
ACACCGACGTCTTCCTCGCCACCTTTCCCAAGTCCGGCACCACCTGGCTCAAGGCGCTCCTGTTTGCGACCCTCCGCCGC
ACCGCGGACGGGCCCGCACTCGCGCCGCTCGCAGCCCACAGCCCCCACCAGCTCATCCCTTTCCTCGAGTTCCAGGTTTT
CGCCAACGGCCGGATCCCCGACCTGAGCTCCCTCCCTGCGCCGCGGGTCCTGATGACGCACATCCCGTCCCGGTCGCTGC
CGGAGTCCGTGGCCGCCTCCGGCTGCAAGGTGGT-------GTACCTGTGCCGGGACCCCAAGGACTGCTTCGTGTCGCT
CTGGCACTTCTGGAACGGGTTCGCGGCGTCGCCATGGGACCTCGGCGAGGCGCTTCTGCAGTTCTGCGACGGCGTTTCGC
TGTTCGGGCCTTTCTGGGAGCACGTGCTGGGCTACTGGCGCTGGCACGTGGAGAGGCCGGAGCAGGTGCTCTTCCTGACC
TACGAGGAGCTCGCCGCCGACACGGTCGGTCAGCTGAGGCGCCTCGCTGCGTTTGTCGGGTGCCCGTTCACGGCAGAGGA
GCGGGAGGCCAGGGTAGACAGGGAGATCGTGGAGGCATGCGCCATGGAGAGCCTGGCGGGACTAGAGGTGAACCGGTCCG
GGAAGACCGCCATGACCGAGACGTCAGTGGCGAACAACATATTCTTCCGGCGCGGTGTCGTTGGCGACTGGAAGAACCAC
CTGACGCCGGAGATGGCGAGAAGGATGGATGAGATCACCAAGAACAAGTTCAGAGGATCGGGGTTGGCGCTGACACCGGC
AACCGCAGATCAGAACTAGCGGGTTCAG----------------------------------------------------
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-------------------------------
>chr5D_1352
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------------------------------------------------CAGCTCGTCCCATTCCTGGAGGCCCGAGTCTT
CACCAACGGCCGGATCCCCGACCTGAGCTCCCTCCCGGCGCCGCGGCTGCTGATGACGCACATCCCGTCCGTGTCGCTGC
CGGAGTCCGTGGCCGCATCCGGCTGCAAGGTGGTGTACCGTGTACCTGTGCCGGGACCCCAAGGACTGCCTCGTGTCGCT
CTGGCACTTCTGGAACGGGCTCGCGCCCGCACCGTGGGACCTGGTCGAGGCGTTCCGGCAGTTCTGCGACGGCGTGTCGC
TGTTCGGGCCGTTCTGGGAGCACGCGCTGGGGTACTGGCGCTGGCACTTGGAGAGGCCGGCGCAGGTGCTGTTCCTGACC
TACGAGGAGCTCGCCGCGGACACGCTCGGCCAGCTGAGGCGCCTCGCGGGGTTCGTCGGACGCCCGTTCACGGCGGAGGA
GCGGGAGGCGGGGGTGGACAGGGGGATCGTGGAGGCCTGCGCCATGGAGAGCCTGGCGGGGCTGGAGGTGAACCGGTCTG
GGAAGACCGACATGGCCGAGTCGTCGGTGCCCAACAACGTTTTCTTCAGGCGCGACGTCGTTGGGGATTGCAAGAACCAC
CTGACGCCGGAGATGGCGAGGAGGCTCGATGAAATCACCGAGAGCAAGTTCAGGGGCTCTGGCTTGGTGTTGCCACGGGC
AACCACACATC---------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr2B_2103
--------------------------------------------------------------------------------
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------GAGAGAGATTTCGCATATACCATTAAACAAATGTCAAATTACAACACGAAATTGTGAAAATCGCGAGAAAGAAA
GAGAAAAGACACATGCCCAAGAACATATGCAAGAAAACTTCATTGAAGAAGAATTTTGCAACCATCATCTTCACCACTTG
CCATCTTCGGAGACGAAGAAGCACCATCTTCCATGAGGACTTTGTGAGCCGAAGAAGAGGCCTGCCACCGGCAAGGCCAT
TATCACTGTGGCGCGTCGACTGGGGATCATCCCCGTGCTTCTCGAAACCCAGATCCGTTGCTTACCGTCGATGTCGTCGA
GGTAGAACACCGGAACCACCACCGACTAGCCTCCAACCTTGTTCTTGGACCTTTATCTTCCCCCAAACAAAGGCGACACC
ACACAAAATGAGATCTTCCATAGACACAAT-AAACACCACCAAATCCATCGCACCAAGAAAATGATGGAATATGGTTCCC
ATGGATCCCTCAATTTCACCACCGAGGATGTCATCGAGAT-GGGGCTGAGAACAGGGAAATTTTATTCCAAACACCAGCG
TCACCGCCATCCAAACGCCGCTGTGGGACACACTAAACCTAACCCTAACTATAGCCGCTGCAGAGAGCCGGGGTTCCC-C
ACCCATCCGTCATCAGAGTGGCG-TCGGAGGGCAAGAGAACCCGTGGCCTCGCCGGCAGAG-------------------
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>chr1B_2105
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--------GAGAGATTTCAC--ATACCATTGAACAAATATCAAATTACAACATGAAATCATCAAAATCACGAGAAAGAAA
GAGAATA--------CCCAAGAACATAGGCAAGAAAACTTCATTAAAGAAGATTTCTGCAACCGTCATCTTCACCACTTG
CCGTCTTCGGAGACGAAGAAGCCCCATCGCCCATGAGGACTTTGTGAACCGAAGAAGAGGCCTGCCACT-----GGCCAT
TATCGTTGTGGCGAGTCGACAGTGGATCA-CCCCGTTCTTCTCGAAACCCAGATCCGTTGCACACCGTTGATTTTGCCGA
GGTAGAACACCAGAACAGCCACCCACTAGCCTCCAACCTTGTTCTTGGACCTTTATCTTCCCCCAAACAAAGGTGACACC
ACAAGAGATGAGATCTGCCATAGACACAAT-AAACACCACCAGATCCATCGCACCAAGAAAATGATAGGATATGGTTCCC
ACAGATCCCTCGATTTCACCACCGAGGATGTCATCGAGGA-GGGGTTGAGATTGGGGAAATTTTATTTCAGACGCTGGCG
TCACCACCATCCAAACGCCACCTTGGGACACACTAAACCTAACCCTAACTACAGCTGAGGCAGAGAGCCGGGGTTCCCAC
ACCCATCCGTCGCCGGAGCCGTGATCGGAGGGCAAGAGAACCCATGGCCTCGCTGGCAGAG-------------------
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>chr6D_2234
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------------------------------------------------------------ACCGCCATCCTCGCCTCATG
CCATCTTCGGAGACGAAGACACACCATCGACCATAAAGGCTTTGTGAGCCCAAGAAGAGGCCTGCCGCCGGCAAGGCCAT
TGTCGCTCTGGCGGATCGATCGGGAATCATCCTTTTGCTCCTCGAAACCCAGATCCGTTGCATGCCATTGATGTCGTCGA
GGAAAAACGCCAGAACCGACACCCAAGCCC--CCGACCTTGTTTTCGGACCTTCATCTTACCCCAAACAAAGAAGGCACC
ACACTAGATGAGATCCACCATAGACACAACAAAACACCACCAGATCCTTCACACCAAGGAAATGATGCAATTAGGTTCCC
ACAGATCCCTTGGTATCATCACCAAGGACATCACAGAGATGGGGGCTGAGATCGCGAAATTTTTATTCCAAACGTCGGCG
TCACCGCCGTCCAAACGTAGTTGTGGAACACATTAAACTTAACCCTAACTACAGCCGAGGCAGAGAGCCGGTGTTCCCTC
ACCCATCTGTCGCTGGAACGGCAATCGGAGGGCAAGAGAACCCACGACCTCGCCGGCAGAGT------------------
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-------------------------------
>SNPs
---------------------------S---S---------------------------------S------S-S-----
-----------------S----S----S---S--------S-----------------------------S---------
S------------------------------S------------------------------------------S-----
---S-------------------------------------------------------------------------S--
--------------S---------------------------------------------------S-------------
--------------------------------------------------------------------------------
---S-------------------------------------------------S----S------------S-S------
-----------------S---------------------S-------------------S--------------------
--------------S-------S--------------S------------------------------------------
------S-S--S---------------S----------------S-----------------------------------
------------------------------------------------------S--------S----------------
------------------------------S----------------S-------------S------------------
---------------------------------------------S----------------------------------
-----------------------------------S---S----------------------------------------
------------------------------------S---------S---------------------------------
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--------------------------------------------S-----------------------------------
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-------S---------S--------------------------------------------------------------
------------------------S----------------------------------------------S-SSSSSSS
SSSSSS--------------------------------------------------------------------------
-------S---S------S---------------------S---------------------------------------
S----------S---------------------------------------------------S----------------
-----------------S--------------------------------------------------------------
-S----------------------------------------------------------S-------------------
--------------------------------------S-----------------------S-----------------
----------------------S-------------------------------S--------------------S----
----------------S-----S--S---S--------------------------------------------------
----------------------------------------------------------------S---------------
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-----------------------------------------------------------------------S--------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S--------------------
------------------------S-------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_855
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-----------------------------------GGAGGTGGTGGTTGGATGAC-------------------------
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>reverse_2599
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--------------------------------------GCCAAATCCATCGCACCAAG----------------------
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-------------------------------
