>input_sequence_62524
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----------------------------------ATCGACCTCCTTCTCCGGCATCGCCGTCTGCAGCCGCCGCACCGAT
CTGCAAAG-ATGAGCTGCCCTGTCGACATGTTCGGCCCACTGCCGGACGAGGTCCTCTGCCACGTGCTCTCCTTCCTGCC
CTCGCGCGAGGCCGTGCAGACGTGCTGCCTCGCCC---------------------------------------------
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--------------------------------------------------------GCCGCTGGAGCCACCTCTGGAAAT
CCGTCCCCGCCATCCGCGTCCGCGGCGAGGGCGCCAAGTTCCTCCTCTTCGTCAACAACCTCATCTTCGAACGCAACCTC
GGCTCCGCGCCGCCGCTGCACTCGTTGGAGATCGACGCCGACGTCGAGGTGCGCCTCGCCTGCTCTTACTGCAAGCTGCT
TGACTGCGACTGCAACTTCGACGACTACCGCCACCGTCGCGAGGTCAATGCCCAGGTCGACGACTGGGTCAGGCATGCCC
TGCGGGCGGGCCGCGCCCGCTCGCTCAGGGCCTGCTTCGGTGAGACCCGGTGGAAGCCCCGGCGCGCCCTCCCTTTCGCT
TCACCGCATCTGACGACGATTCACCTCGACGCCGTTTGCCTCAGAGGCGGCC----------------------------
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------------------------------------------------------AGCTGGACTTCTCCTGCTGCCCGGCG
CTGCTGCGGCTGGATCTCGTGCTCTGCAGCCTCCACGGGGACGCGCTGGTGTCGCCCTCGCTGGAGCGCCTCGCCATCAA
CGACTGCCACACCGACATCTTTCAAGACCCCAAC---GCACCCGATGAAAGGTTCCACATGAGCTTGTCCACGCCAAGAC
TCCGTTTTGTGGAGATATCTGATAACTACGACAAGGAACAGTTCCTTGAGATGG------CGCCATGGTTGACGGAGGAG
AGCATCTCATACTATTGATGTGTGA---TGGTGATGATGGTTGTTCACCATACCCATAGACCGTGAATGCTACTACCAAC
TGGAGATAGTTCATCCTATATTTATATTTAGGCGATATATAGGAACACTACATTAGTCAAGCAGAAGCAAAGCCGTAGTA
ATATCTTAAATAATA----------------------------------------------------------------T
TAGCACTTG-TGAAAATCACATAAGACGAACAATACACGCTTTATCTATAT-----------------------------
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---------------------------------------------------------------
>chr3A_1_TraesCS3A01G087600
GTCTGGAAACCCTGAGGTGTACTGAAATTTCAACAGAGATGATCGAAAAGCTTGGCTGGATCTGAAAGAGCAGAAAACGG
ACAGTAGTAAACCTGCAAAGGAAATTACACAT--AAAAATTCAGAAACAGTCACCACCAAATTGAATACGGTCCTGAGGT
GAGGAATCGTGGACATAACTAAAGATGCAATACGCGTGGCTCAAATTTGATGGTAAAATTTGCATACAACGACTCGGCAA
GCACACACCGCATGCAAAATGAGATCCCAACCAAAGAAAAGATAGGAGAGGAGGTGACTTGGTCACCACTACCTTCACAT
GACAGGACGGAGGAGGCAGC------------------------------------------------------------
--------------------------------------------------------------CGGTGGACGACGACGATG
TGGGGAGGGGCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGCGCC
CATGGAAACAATCAGGT---------TTTAGGAAACAAAAATACGGGATTTTAAGGAAACTGATGACGGATCGGTGCACC
ACAGAAGAAATCATAACGTTATC-AT---GGAAGCAAATTATGCACCTGCTCAATTTTGATAATGAAGAACATCCAAATA
TTAAGGAAACAGATCCCAGTTTTTTTG---GGAGGGGTAACAGATCCCAAAATTGTAGGACG----TAGATGCTTTGTTT
CTTATATCTTATATATTATTAATTATTATTA-----CGAGCTGGGGTTTCCCTAAATAATAGTAGTATCAGGTTCCAG--
-ATATAT--AAGGACGTACATGGGGCTCCTTTCAATCGACCTCCTTCTCCGGCATCGCCGTCTGCAGCCGCCGCACCGAT
CTGCAAAG-ATGAGCTGCCCTGTCGACATGTTCGGCCCACTGCCGGACGAGGTCCTCTGCCACGTGCTCTCCTTCCTGCC
CTCGCGCGAGGCCGTGCAGACGTGCTGCCTCGCCC---------------------------------------------
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--------------------------------------------------------GCCGCTGGAGCCACCTCTGGAAAT
CCGTCCCCGCCATCCGCGTCCGCGGCGAGGGCGCCAAGTTCCTCCTCTTCGTCAACAACCTCATCTTCGAACGCAACCTC
GGCTCCGCGCCGCCGCTGCACTCGTTGGAGATCGACGCCGACGTCGAGGTGCGCCTCGCCTGCTCTTACTGCAAGCTGCT
TGACTGCGACTGCAACTTCGACGACTACCGCCACCGTCGCGAGGTCAATGCCCAGGTCGACGACTGGGTCAGGCATGCCC
TGCGGGCGGGCCGCGCCCGCTCGCTCAGGGCCTGCTTCGGTGAGACCCGGTGGAAGCCCCGGCGCGCCCTCCCTTTCGCT
TCACCGCATCTGACGACGATTCACCTCGACGCCGTTTGCCTCAGAGGCGGCC----------------------------
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------------------------------------------------------AGCTGGACTTCTCCTGCTGCCCGGCG
CTGCTGCGGCTGGATCTCGTGCTCTGCAGCCTCCACGGGGACGCGCTGGTGTCGCCCTCGCTGGAGCGCCTCGCCATCAA
CGACTGCCACACCGACATCTTTCAAGACCCCAAC---GCACCCGATGAAAGGTTCCACATGAGCTTGTCCACGCCAAGAC
TCCGTTTTGTGGAGATATCTGATAACTACGACAAGGAACAGTTCCTTGAGATGG------CGCCATGGTTGACGGAGGAG
AGCATCTCATACTATTGATGTGTGA---TGGTGATGATGGTTGTTCACCATACCCATAGACCGTGAATGCTACTACCAAC
TGGAGATAGTTCATCCTATATTTATATTTAGGCGATATATAGGAACACTACATTAGTCAAGCAGAAGCAAAGCCGTAGTA
ATATCTTAAATAATA----------------------------------------------------------------T
TAGCACTTG-TGAAAATCACATAAGACGAACAATACACGCTTTATCTATATCTGTTGTACAA-----TGAACACCCGCAA
TACATGCATACTGAATTTTGGTAGGAAACAATTTGAATCGGTTGGACCACCCACCCGCAATCACATAAATCAGTATGAGC
ATCCATTGCCCCCTAAATTTTTTTTGCCCCCTATGTTTACCACGTA----------TCATGGACCACCCATCTCGGTCCC
TCTTTTCTATTACCTTTTATATAC--------------------------------------------------------
--------------------------------------------------------------------TATATAGCAAAA
AGGCCCGTGC----------------------------------------------------------------------
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---------------------------------------------ATTGCAACATGTGCAAATAAATAAATTTATGCTTA
AGAACTTAG-AAAATAATTTAC---------------------------------------------------CACTCAA
ACAAGTTTCAAGTAACAAAACAA---TTTTCTTTTCATTTGAGCAAAACAAACAGGGCAA--------------------
------------TCACTCG----CCCCTTCTAAGCATTAATGATAGCAGTTGCGTGCAAGTGCAAGGTCAGAAAAGCTTA
ACTTTCAGACGATCAGACATGCTTGATGACAATATAAACAATAGCCTTGTTATAGTATGTGACGGTATATGGGTGATGAA
ACCTAAGATCTAGCAAAAAGTATTAGTCAAAGGTTCCAGAACATTTATCAAATGATAGAAACGTCCAGTTTGAGGCGTTG
TCGTCTGCAGCATGCAGCATAGGAATAAAGTCAGAAGCAAAAACAATACAAGTACTCAAATTAACATGGTGGATAAATAG
ATAAAAGTAATACAAATGGAGTAC--TAGAGAACTGCCAATATCAATGATAAATATTGAAGTGAAAGAAGCACCCGCTAG
ATTGATTGCAACCGTATTAACCAAGTTGATAAATAGACTTTCATCCTAGACTGACCATGTACAATATGGCGTCTGCTAGG
CGTCATCCGGATGCTAATTCATGTCGTGAC-------------------AGCCATTGACTGGAAATTACGCGCGACCGTT
GGATTGTCGACACGTGTTCGGAGAAAAATCGTACGCCGTTGCAAACCCGCGTGTTGCTGCAATCGTGAGAGGTGGAAGCA
AAATCCCCACC------TCCTCTGCACCCACCCGAACTAGGGCGATGGCGAGATCCCCAGCGG
>chr3B_3
--CTCGAAACCCTGAGGTCTACTGAAATTCCAACAGAGATGATCGAAAAGCTTGGCTGGATCTGAAAGAGCAGAAAACTG
AGAGTAGTAAACCTGCAAGGGAAAATTACACGTAAAAAAATTGGAAACAATCACCATCAAATTGAATACGGTCCTGAGGT
GAGGAATCGTGGACATAACTAAAGATGCAATGTGCGTGGCTCAAATTCGATGTTAAAATTTGCATACAACGACCCAGCAA
GCACATACCGCATGCAAAATCAGATCCCAACCAAAGAAAAGATAGGAGAGGAGGTAGCTCCGTCG-CACTACCTTCACCG
GACAGGGCGGAGGAGAGCTGAGCAATCGCGGTGGAGGCAGCCGGTGCAGCCCCTCACGTCAGTGAGTAGATGAGCCGGGG
GAGCTCTAGGCAGTGGTGGTCGCCCGGATCGTCCCAGGGTAGGCGCCGACGGGAGCTCAGGGCGGTGGACGACGACGATG
TGGGGATGGGGTGTAGACGGGCTGGACTGAGCAGGCGACGGAGGAGGCGTGCAGATTAGCGACGGAGACGGGGCACACGG
GGCTTGGCGGTGCTCGATCGGGGAGGGAGCAGCATCCATGGGGCCTCGATTCTTTTTCCCTGGCGACGGAAGAAAAGTTT
AGCATCGTGGGGTGGGATTTGATTCTACTTGAGCGTAAGAGATGGCCC--------------------------------
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------AACAATCAGGTGGATTTTTATATAGGAAAC--AAATACGGGAAG---------CTGACGACGGATCGGTGCACC
ACAGAACAAATCATAACGCGCGTAAT---GGAAGCAAATTATGTACCTGCTCAATTTTGATAATGAAGAACATCCAAATA
TTAAGGAAACAGATCCCAATTTTCTTTTCTGGATGGGTAACAGATACCAAAATTTTAGGACG----CAGATGTTTTGTTT
CCTA----------------------TATTATTATAAGGGCTGGGGTTTCCAT-AATAATA------TCCGGTTCCAG--
-ATATATACAAGGACGTCCATGGGGCTCCTTTCACTCGATCTCCTGCTCCGGCATCGCCGCCTGCG---------CCGAT
CTCCAAAG-ATGAGCTGCCCTGTCGACATGTTCGGCCCACTGCCGGACGAGGTCCTCTCCCACGTGCTCTCCTTCCTGCC
CTCGCGCGAGGCCGTGCAGACGTGCTGCCTCGCCC---------------------------------------------
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--------------------------------------------------------GCCGCTGGCGCCACCTCTGGAAAT
CCGCCCCCGTCATCCGCGTCCGCGGCGAGGGCGACAAGTTCCTCCTCTTCGTCAACAACCTCCTCTTGGACCGCGGCCTC
GGCTTTGCGCTGCCGCTGCACTCGTTCGAGATCCAAGCCGACCTGGAGGTCCGTCTTGCCTGCTCTTACTGCAAGCTGCT
TGACTGCGACTGTGACTCCGACGACTACCGTGACCGCCGCAAGGTCAATCCCCTGGTCGACGACTGGGTCAGGCATGCCC
TGCTGGCGGGCCGTGCCCGCTCGCTCAGGGCCTGCTTCCATGAGGCCCGGTGGGAGCCCCGGCGCGCCCTCCCCTTCGTC
TCTCCGCATCTGATGTCGATCCACCTCGACGCCGTTTGCCTCAGAGACGGCC----------------------------
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------------------------------------------------------AGCTGGACTTCTCCTGCTGCCCGGCG
CTGCTGCGCCTCGATCTCGTGCTATGCAGCCTCCACGGGGACGCACTGGTGTCGCTCTCGCTGGAGCGCCTCGCCATCGT
CGACTGCCACACCGACATCGATGAAGACCCGGAG---GCGCCCGATGAAAGGTTCCACATGAGCTTGTCCACGCCAAGAA
TCCGTTTTCTCAAGATATCTCATAACTACGACAAGGAACAGTTCCTCAAGATGG------CGCCATGGTTGACGGAGGAG
AGCATCTCATACTATTGATGTGTGA---TGGTGATGATGATTGTTCACCATACCCATGGACCGTGAATGCTACTACCAAC
GGGAGATAGTTCATCCTATATTTATATTTAGGCAATATATAGGAGCACTACATTAGTCAAGCAGAAGCATAGCCATAATA
ATATCTTAAATAATA----------------------------------------------------------------T
TAGCACTTG-TGAAAATCACATAAGGCGAATAACACACGCTTTGTCTATCTCTG-TGTACAA-----TGAACACCCGCAA
TACATGCATACTGAATTTTGGTAGGAAACGATTTGAATCTGTTGGATGATC-------------------CAGTATGAGC
ATCCATTACCCCCC---TTTTTTTTGCCCCCTATGTTTACCACGTGTATA--------ATGGACCACCCATCTCCGTCCC
TCTTTTCTATTACCTTTT--ATAC--------------------------------------------------------
--------------------------------------------------------------------TATATAGCAAAA
GGTAAACGTTTCGGACCGGCGGACCGGCCGAAGTTGGGCCGGTCGCGCGCGGTGCATACGATAAAGAGAGATCGAACGCT
CTCGAACGCTCTGTGCTCTCCCCACCTCACAACGCTCGGTGCTTTTCTTATCCATCCACACATCGATCTATCTCTCCTTC
CTCTGTTTCTTTCCCCACCAAGATCTCCTCCTTTCTCCGCCATGGCCGCCTCCACCGATGACGCCCGCCCCCCTTCCCTT
CCGGCATGTGGTGGCCGTAGCCGGTACCCGCCTCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAACCGGCTCCGATGCTGCAACCACAGTTTTTTTGCTGGAACCGGGTGGGAGGAAAGCTGCAAGCACTAT
TGGACGATTCTGGAACCAGACGGCGTCGACATCATTTTTGCTGGAACCGGCAATTTTTTTTGCTGGCACCGGCAAGATTT
TTTGTTGCGAGGACAGGTGAGAGTTTTTGGTGTGACCGGCGGCGGCGACATGTTTTTTGCTGGAACCGACAATATTTTTT
GCTGCAACTAGCATATGTTTTTGCTGGAATTGGTTAGTTCGTTTGCTACAATGAAGTTTTTAAAGTTTGTTGCTGTAACT
TTTTGTGCTGGAACCATTGTTAATTATGGCTGGAACCGGCTACTGTTTTTGCTTCAACTGATCATCGGGAGATTTCTGTC
CATTGAGTTTTTCCACTGGAACACGACGGTTCTAGTCGACGGCGAGCCGGTGCTGGCGCCGCGAGCGATGTTACAACACC
ATGGTGACCACGAGCTGGAACCGTTGGGCATTAGAGTTGTGACGATGGGAGGAGGCAAGCTGGAAGGGCATGTTGCAACC
GAGGCGAGGGACCACCGCGAGCTCACCGGCGGTGGCTGGTCGCCTGCGCGTCCATGGCCGGGGGCCGGTGGCTCGCTGTC
ACCGTCCTCTTTCCCGCAAGGGGGTGCGTTGGCCAGATTTGTTTGTGAAAAGTCAAAGGTCTGTGAGAGTTAGAGGTTGG
GGATGAAGTGGGAGGCTAGATCTGGCGGTTAGAAATTGCCACATCGGACGCACGGGACGCGGCCGGCCGAAAATTGGGCC
GGTGCGCCGGCGCATATCACTGCCCATAGCAAAAGGCCCGTACATATTGCAACATGTGCAAATAAATAAATTTATGCTTA
AGAACTTAG-AAAATAATTTAC---------------------------------------------------CACTCAA
ACAGGTTTCAAGTAACA--ACAA---TTTTCTTTTCATTTGAGCAAAACAAACAGGGCAA--------------------
------------TCACTCG----CCCCTTCTAAGCAATAATGATAGCAGTTGCGTGCAAGTGCAAGGTCAGAAAAGCTTA
ACTTTCAGATGATCAGACATGATTGATGACAATATAAACAATAGCCTTGTTATAGTATGTGACGGTATATGGGTTATGAA
ACCTAAAATCTAGCAAGAAGTATTGGTCAAAGGTTCCAGAACGTTTATCAAATGATAGAAACGTCCAGTTGGAGGCGTTG
TCGTCTACAGCATGCAGCATAGGAATAAAATCAGAAGCAAAAACAATGCAAGTACTCAAATTAACATGGTGGATAA---G
GTAAAAGTATTACAAACGGAGTACTATAGAGAACTGCCAATATCAATGATAAATACTGAAGTGAAAGAAGCACCCGCTAG
ATTGATTGCAACCATATTAACCAAGTTGATAAATAGACTTTCATCCTAGACTGACCATATACAATATGGCGTCTGCTAGG
CGTCATCCGGATGCTAACTCATGCCGTAAC-------------------AGCCATTGACTGGAAATTACGCGCGACAGTT
GGATTGTCGACACGTGTCCGGAGAAGAACCGTACGCCGTTGCAAACCCGCGTGTTGCTGCAATCGTGAGAGGTGGAAGCA
AAATCCCCACC------TCCTCTACACCCACCCGAACCAGGGCGATGTCGAGATCCCCAGCGG
>chr3B_693
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----------------T---------TTTAGGAAAC--AAATACGGGATTTTAAGGAAACTGAGGACGGATCGGTGCACC
ACAGAACAAATCATAACGTT----AT---GGAAGCAAATTATGTACCTGCTCAATTTTGATAATGAAGAACATCCAAATA
TTAAGGAAACAGATCCCAGTTTTCTTTTCTGGATGGGTAACAGATACCAAAATTTTAGGACG----CAGATGTTTTGTTT
CCTA----------------------TATTA-----AGAGCTGGGATTTCCCTAAATAATA------TCCGGGTCCAG--
-GTATAT--AAGGACGTCCATGGGGCTCCTTTCAATGGATCTCCTGCTTCGACGTCGCCGC-------------------
CTGCAAAG-ATGAGCAGCCGTGGCGACATGTTCGACCCGCTGCCGGACGACGTCCTCTGCCACGTTCTCTCCTTCCTGCC
CTCGCGCGAGGCCGTGCAGACGTGCCGCCTCGCCC---------------------------------------------
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--------------------------------------------------------G-----------------------
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--------------------------------------------------CCGCTGGCGTCACCTCTGGAGATCCGCCCC
CGCCATCCGCGTCCGCGGCGAGCGCAAGAAGAAGAAGAAGTTCCTCCGCTTCGTCGACAACCTCCTCTTCTGCCGCGACG
TCCGCTCTGCGCCGCCGCTGCTCTCCTTCGAGATCGACGCAGACGTCGACGTCCGCATCGCCTGCTCTTACTGCAAGCAA
CATGACTGCGACTGTGACTTCGACGACTACGCCGACCGCTCGAAGGTCAATCCCCGCGTCGACGAGTGGGTTACACATGC
CCTGCGGCAGTGCCGCGCCCGCTCGCTCAGGGCATGCTTCCATGAGACCCGGTGGAAGCCCCGGCGCGCCCGCCCCTTCG
CATCTCCGCATCTGACGAGGATCCACCTCGACGCCGTCTACCTCAAAGACCGCCAACTGAACTTCTCCTGCTGCCCGTCG
CTGCTGCGCCTCGATCTCGTGCTCTGCAGCCTCTACGGGGACGCACTGGCGTCGCCCTCGCTGGAGCGCCTCGCCATCGT
CGACTGTCACACCGACATCGATGAAGACCCGGAG---GCGCCCGATGAAAGGTTCCACATGAGCTTGTCCACGCCAAGAC
TCCGTTTTCTCGAGATATCTGATAACTACGACAAGGAACAATTCCTCGAGATGGCGCCGTCGCCATGGTTGACGGAGGAG
AGCATCTCATACTATTGATGCTGCTGCCTGCTGCTGATGATTGTTGACGAGACGCTGGGACCGTGAATGCTACTACCAAG
GGGAGATAGTTCATCCTATATTTATGTTTAGGCAATATATATGAGCATTACATTAGTCAAGCAGAAG--TAGCCAAAATA
ATATCTTAAATAATACTCCCTCCGTCCCATAATGTAAGACATTTTTTAACACTACATTATGGGACGAAGGGAGTAAGTAT
TAGCACTTG-GGA-------------------------------------------------------------------
-------ATACTGAATTTTGGTAGGAAACAATTTGAATGTGTTGGCCGATC-------------------CAGTACGAGC
ATCCA------------------TTGCCCCCTATGTTTACCACGTA----------TCATGGACCACCCGTCTCTGTCCC
TCTTTTCTACTACCTTTTATACTATTCCCTCCGTTTCA-TAAAAATTTTTTAGAGATTTTAATATGAACTACACTCTAAG
TCTATATACAAATGTATGTAGCCCATATTAAAATCTCTATAAAGACTTATATTTGGAAACGGATTGAGTATATAGCAAAA
AGGCCTGTGC----------------------------------------------------------------------
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---------------------------------------------GTTGCAAAAGATGCAAATAAAAA-----ATGCTTA
AGAATCTAAAAAATAAAAAATAATTTACATGCATCTCCCAGATGCAGAGGCCGGGGTCCTTTTCTAAAGAAAACACTCAA
ACAGGTTTCCAGTAACA--ACAA---TTTTATTTTGATTTGAGCAAAACAAACATGGGAAATCACTAAGATGCCTTATAG
TCGGAGATTGAATCACTAAGCTACCCCTTCTAAGCAATAATGATAGCAGTTGCGTGCAAGTGCAAAGTCAAAAAGC----
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>chr3D_693
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----------------T---------TATAGGAAAC--AAACACGGGATTTTAAGGAAACTGATGACGGATCGGCGCACC
ACAGAACAAATCATAACGTT----ATTATGGAAGCAAATTATGCACCTACTCAATTTTGATAATGATGAAGAACAGC--A
TTAAGGAATCATATCCCAGTTTTCTTTTTTGGAGGGATAACAGATCCCAAAAATTTAGGACGTACGTAGATGTTTTGTTT
C---------------------------TTTTTAGAGGAGCTGGGGTTTCCCTAGATAATA------TCCGGTTCCAGCT
GGTATAT--AAGGACGTCCATGGGGCTTCTTTCAATCGACCTC------------------CTGCAGCCGCCGCACCGAT
CTGCAAAG-ATGAGCTGCCCTGTCGACATGTTCGGCCCACTGCCGGACGAGGTCCTCTGCCACGTGCTCTCCTTCCTGCC
CTCGCGCGAGGCCGTGCAGACGTGCTGCCTCGCCC---------------------------------------------
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--------------------------------------------------------G-----------------------
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--------------------------------------------------CC----------------------------
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------------------------------------------------------AGCTGGACTTCTCGTGCTGCCCGGCG
CTGCTGCGCCTGGATCTCGTGCTCTGCAGCCTCCACGGGAACGCACTGGTGTCGCCCTCGCTGGAGCGCCTCGCCATCAA
CGACTGCCACACCTACATCTTTCGAGACCCCGAC---GCACCCGATGAAAGGTTCCACATGAGCTTGTCCACGCCAAGAC
TCCGTTTTCTGCAGATATCCGATAACTACGACAAGGAACAATTCCTCGAGATGG------CGCCATGGTTGACGGAGGAG
AGCATCTCATACTGTTGAT----------------GATGATTGTTGACTAGAGCCTTGACC---GAATGCTACTACCAAC
CGGAGATAGTTCATCCTATAACATAGCC-------------------------------------------------ATA
ATATCTTATACTGTA----------------------------------------------------------------T
TAGCAATTGCTGAAAATCACATAAGGTGAACGAAACACGCTTTGTCTATCTCTGTACAATGAACAGTTGAACACCCGCTA
TACATGCATACTGAATTTTGGTAGGAAACAATTTGAATATGTTGGCCGATC-------------------CAGTACGAGC
ATCCA------------------TTGCCCCTTATGTTTACCATGTGTATCATGGATTCATGGACCACCCGTCTCCGTCCC
TCTTTTCTACTACTCCCTCGGTCCCATAATGTAAGACGTTAAGACGTTTTTTGACACTACACTGTGAA------------
----------------------------------------------------------------------------AAAA
AGGCCCGTGC----------------------------------------------------------------------
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---------------------------------------------ATTACAACAGGTGCAAATAAATAAATTTATGCTTA
AGAACCTAAAAAAATAATTTAT---------------------------------------------------CACTCAA
ACAAGTTTCAAGTAACA--AAACAATTTTTCTTTTGATTTGAGCAAAACAAACATGGTAA--------------------
------------TCACTAAGCTGTCCCTTCTAAGCAATAATGATAGCAGTTGCGTGCAAGTGCAAGGTCAGAAAAGCTTA
ACTTTTAGATGATCAGACATGATTGATAACAATCTAAACAACAGCCTTGTTATAGTATGTGACGGTATATGAGTGACGAA
ACTTAAAATTTAGCAACAAGTATTGGTCAAAGGTTCCAGGACGTTTATCAAATGATTGAAACGTCAAGTTTGAGGCACTG
TCGTCTGCAGCATGCAGCATAGGAATAAAGTCAGAAGCAAAAACAATGCAAGTACTCAAACATGGAGAAA----AA---G
GTAAAAATAATACAAACAGAGTACTATAGAAAACTGCCAATATCAATGATAAATACTGAAGTGAAAGAAGCACCCACTAG
ATTGACTGCAACCAGATTAACCAAGTTGATAAATAGACTTTCATCCTAGACTGACCATATACAATATGGCGCATGCTAGG
CGTCATCCGGATGCTAATTCGCGTCATAACTCATAACAGCCGTCAAAAGAGCAGTTGACTGGAAATTAAGCGCGGCCATT
GGATTGTCAGCACGTGTCCAGAGAAAAACCGTACGCTGTTGCATACCCGCTCGTTGCTACAATCGCCGGAGGTGGAAGCA
GAAACCCCACCTCCTCCTCCTCTACACCTGCCCGAACCAGGGCGATGGCGAGTTCCC------
>chr5B_1045
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------------------------------------------------------------------------------AT
CTGTAAAGAATGAGCGGCGGCGGCGACCTGTTCGGTGCGCTGCCGGACGAGCTACTGAGCCACGTGCTCTCCTTCCTGCC
CTCGCGCGATGCCGTGCATACATCCCTGCTCTCCCGCCGCTGGCGCCACCTTTGGAGATCAGCCCCCGCCATCCACGTCC
GCGGCGAGGGAGACGCCTTCTGCGCCTTCGTCAACAGCCTCCTGATGGGCCGAGACGCTGCCTCCGCGCCGCCGCTGCGG
TCGTTCGAGATCGACGCCAACCTGAAGAAACTCCGCGACTGTAACTACTGCGAGTACAAGCCCGACTACTGCAGGTGCGA
G-------TTCTTCTACCC-TACTC---GGACCGCTGGGAGGTCAACCCCCAGGTCGACCTGTGGGTCACGCACGCACTC
TCGGTGGGCCGCGCCCGCTCCCTCACGGCCCGCTTCCATCAGCAGCAAGACGTGCTCTGGAAGCCACGGCGCCCCCTCCC
CTTCGCCTCGCCGCACCTGACGACGATCCACCTCGACACCATCCGCCTCGTGGACGG-----------------------
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--------------------------------------------------CC----------------------------
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------------------------------------------------------AACTTGACTTCTCCTGCTGCCCGGCG
CTGCTGCGCCTCAATCTCGAGGGCTGCGACCTCTATGGAGACGCGCTCGTATCGCCCTCGCTGGAGCGCCTCACCATCGA
CGACTGCCGCACCGATATCGACGATGACTGGATCCCAGGACCAGACGAGAAAATGCACACGAGCGTGTCGACGCCGAGAC
TCCGTTTTCTGGAGATATCTAATAACTACGATAAGAAACAGTTCCTCGAGATGA------TGCCTTGGTTGACGAAGGAG
AGCGTTCAT-----------------------------------------------------------------------
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>chr6A_1069
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-----------------------CGACCTCTTCGGCCGGCTGCCGGACGAGCTCCTCAGCCACGTGCTCTCCTTCCTGCC
CTCGCGCAAGGCCGTGCAGACGTCCTGCCTCTCCCGGCGCTGGCGCCACCTCTGAAGGTCCGCCCCCGCCGTCCGCGTCC
GCGGCAAGGGCGACGCCTTCGACCTCTTCGTCAACAACCTCCTCATCAGCCGCGAAACCGCCTCTGCGCCGCCGCTGTGC
TCCTTCGAGATCGACGCCGACCTGAAGACCCGCCTCCACTGCATTTTCTGCGAGAAAAAGTACTGCCAGCGC--------
-----GAGCTCTTCTTCCGCTTAGACGTGGACCGCTGGGAGGTCAGCCCCCGCGTCGACGTGTGGGTCGCACAGGCCCTG
TCGTCGTTCCGCACCCGCTCGCTCACGGCCCGCTTCGACCAGCAGGGGGACGTGCTGTGGAAGCCGCGGTGCCCCGTCCC
ATTCGTCTCCCCGCACCTGATGAGGATTCACCTCGACACTGTCTACCTCGTCGACGG-----------------------
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--------------------------------------------------CC----------------------------
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------------------------------------------------------GGCTCGACTTCTCCTGCTGCCCGGCG
CTGCTGCGCCTCACACTCGTGGGTTGTGCCCTCTACGGGGACACACTGGTGTCGCCCTCGGTGGAGCACCTCGCCATCAT
CGACTGCAACACCGATATCCACAAACACCCGGAAGAAGAGCCCGATGAGAGGTTGCATATGAGCTTGTCCACGCCAAGAC
TTTGTTTCCTGGAGATATCTGATTACTACGACAAGGAGCAGTTCCTCGAGATGA------TGCCTTGGTTGACGGAGGAG
AGCAT---------------------------------------------------------------------------
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>chr5A_1069
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-----------------------CGACCTGTTCGGTGCGCTGCCGGACGAGCTCCTGGGCCACGTGCTCTCCTTCCTGCC
CTCGCGCGATGCCGTGCATACATCCCTCCTCTCCCGCCGCTGGCGCCACCTCTGGAGATCAGCCCCCGCCATCCACGTCC
ACGGCGAGGGAGACGCCTTGTGCGTCTTCGTCAACAGCCTCCTAATGGGCCGAGAAGCTGCCTCCGCGCCGCCGCTGCCC
TCGTTCGAGATCGACGCCAACCTGAAGAAACTCCGCGACTGCAACTACTGCGAGTACAAGCCCGACTACTGCAGGTGCGA
GTTAGGAGTTCTTCTACCCCTACTC---GGACCGCTGGGAGGTCAACCCCCAGGTCGACCTGTGGGTCACGCACGCACTC
TCGGTGGGCCGCGCCCGCTCCCTCACGGCCCGCTTCCATGAGCAGCAAGACGTGCTCTGGAAGCCGCGGCGCCCCCTCCC
CTTCGCCTCGCCGCACCTGACGACGATCCACCTCGACACCGTCCGCCTCGTCGACGG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AACTCGACTTCTCCTGCTGCCCGGCG
CTACTGCGCCTCAATCTCGAGCGTTGCGGCCTCTATGCAGACGCACTCGTATCGCCCTCGCTGGAGCGCCTCACCATCGA
CGACTGCCGCACCGATATCGACGATGACTGGGAAGCAGGACCAGGCGAGAAAATGCACACGAGCGTGTCGACGCTGAGAC
TCCGTTTTCTGGAGATATCTAATAACTACGGTAAGAAGCAGTTCCCCGAGATGA------TGCCTTGGTTGACAAAGGAG
AGC-----------------------------------------------------------------------------
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---------------------------------------------------------------
>chr6B_1086
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TGACGGACCAGCTCGTCAGCTACGTGCTGTCCTTCCTGCC
CTCGCGCGAGGCCGTGCAGACGTCCTGCCTTTCCCGCCGCTGGCGCCACCTCTGGAGATCCACCCCCGCCGTCCGCGTCT
GCGGCAGCGACGAGCCCTTCCTTCTCCTCGTGAAGAACCTCCTCATCCACCGTAACAACGCGTCGGCCCCTCCGCTGCGC
TTGTTCGAGATCGACGCCGATCTCAAGCAACGCGTCGTCTGCTCTTTCTGCCGCAGGAAGGACCGCCACTCCAAGCCCGA
CCGCAATTCCCGG-------------------CCCTGGGAGGTCCATCCCGACGTCGATTTCTGGGTGAGCCAGGCCTTG
TCGCGGTGCCGCGCCCGCTCGCTCACGGCGTGCTTCAGCAGGCAGGAGGGCGTGCCGTGGAAGCCCCGGTGCCCTCTCCC
CTTCGCCTCCGTGCACTTGACCAAGATCCACCTCGACACCGTCTGCCTTGTCAATGG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AACTGGACTTCTCCTGCTGCCCGGCG
CTGCTCCGCCTCACCCTCGTGGGATGCTGGCTCCATGGTGACGCGCTGGTTTCGCCCTCGCTGGAGCGTCTTGCCATTGT
TGAGTGCCGTCGCA---------------CGGATGAAGAATCCGACGACACGTTGCATGTGAGCTTGTCCACGCCAAAAC
TCCGTTTCCTGGAGATATCTCATAACTACTGCAAGGAGCAGTTTCTCAAGATGA------TGTCTTGGTTGACGGAGGAT
AGCGTCTCATA---------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------
>SNPs
SS--S-------------S----------S------------------------------------------------S-
-S----------------S-----S-SSSSSS-------S-SS------S------S-----------------------
-------------------------------SS--------------S----S--------------------S-S----
-----S--------------S----------------------------------SS--SS---SS------------SS
------S--------SSSSS------------------------------------------------------------
--------------------------------------------------------------------------------
------S---S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS------------------------------SS------------------------------------------
------S-------------SSS---------------------------------------------------------
-----------------------S--S---------------------------S-----------------S-------
-S--SSSSSSSSSSSSSSSSSSSSSS----------S------------------------SSSSSS--S----------
-----------------S---------------------------S--------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
---S-----S-----------------------S----------------------------S----S--S---SS----
----SS----S---------------S------S-S------S-S-----S--S--S-----------------------
------------SS---S------------SS----S---S--------S---S--------------------------
---S---------S------------------------SS----S--------S-------------------S----SS
--S----------S-S----S-------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-------------------------------------S---------------------------------
---------------------------------------S-----------------S----------------------
S--------------------------------S----------S------------------------S----S--S--
--------------------------------------------------------------------------------
-------------------------S-------S---------S-----S------------------------------
---------------------------------------S-------S-S-SSSSSSSSSSSSSSSSSSS----------
-------S-----SSSS---------------------------------------------------------S-----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------SS-------------------------------------------------------------
------------------------------------S-------------------------------------------
---------S-----------S----------------------------------------------------------
------S---------S-------S-----------------S-------------------------------------
-----------------------------------------------S----------------------------SSS-
S---------------S--------------------------------------S------------------------
-------------S--------------------------------------------S---------------------
---------------------------S----------------------------------------------------
-----------------S----------S---------------------------------------------------
-----------------------S-------------S-------------------------
>forward_261
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CACACACCGCATGCAAAATG-----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_2074
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTTCGCT
TCACCGCATCTGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>forward_1876
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TGCACTCGTTGGAGATCGAC--------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_3168
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CACCCACCCGCAATCACATA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------
