>input_sequence_62519
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--------------------------------------------ATGACGGGCAAGGCGAAGCCGAAGAAGCACACGGCC
AAGGAGATCGCGGCTAAGATCGACGCGGCGACGACCAACCGCGGCGGGGGCAAGGCCGGGCAGAAGGACCGGCTCGGGCA
GGAGAAGGGCGGCCACGCCAAGATGGAGTGCCCGCTCTGCAAGGTGACGGCCCCCGACGTCAAGTCGATGCAGATCCACC
ACGAGGCGCGCCACCCCAAGCTCCCCTTCGACCCCGAGAAGATCAACAACCTGCACGGCTCCACCGCCGCGGCTCCCGCG
GCGGCGGCCGCCGTCGCCTCCACCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGACGGGGTAATCTAAACC
CCCCA-----TACCCTACCTTGCATCCAAACCCCTCTATGGTCGGTCGTCCGCTCC-----GATCTACTATGGTCGTCGC
CTGCATCTGCTGTCTTAAGTTTACTATATGCTGCCGCTGATGCTGC------TGCTGCTCTAAAATATTGATGCTGTTGC
TGCTGCTGATGCGTGTGGTGTGTCG---TGTGCTAGACGCGTGATTTTTTTTTACCTGTACACATGAGGCCGTGTGGCCT
CATTGCCATGTTTAATTACCTGTCGCTACTCTAAGATGCTGGCAAATTGTTTGCTGATGTTAATGTCTAGTGGCGCTCGA
GAGATCTG-AAAGATCTGCTGTCGATCCAGTTCCTCCAATTGGCGGCTAAAGTGCATGAATCGGGGATTTGCGCTTGAGT
TTCTTATCC-----CGCCGTAAGAAGTATTTTACCTCGTCGATTCTCGGCTATTGATGAAGCTGTCCCTTTTTAGCAAGG
GAGCAACATCGTTT---------------------------------------------------------CCATACACA
ACTCCATGCTTT------AGAATGCTCAACTCTCCTTT-TTCTTCCTGCCATTCGGTTACTTATGCCATGTTCATTAAGC
ATCATGGATCGATCGGTCAGAATTGGTCTCCTGGGAGTATTCTCAATATTCCTGGTGGTATCACTGGCAGCCTTGCTGCC
CCCAGTTTGATGATGAATGA--------------ATTTGCCATTGCAGCGATGAACAGAAATGA----------------
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>chr7A_1_TraesCS7A01G410000
GACTGTGGCATTGCAACTATATATATAGAGAGGGAAGTAACACGCTATATATACTGGTGGCCATGCAAGCGTCGGTGACG
GATCTTGGACATGGATGATTAAGATGCGGAGGCGGTGGAGCATGGTTGTGTCACAGCTTCCTTTTGAATCGGTGGTGTTG
CTGCTTGCGTGTCGTCCTTGCTCGACCTAGGCATCCTTGGTATTCATATCTTTGTATCAAAGTCATTGGCGGGGATCATC
CAGTGAACTCCGCATGACTTTGTCCTAGCACCGCTACCATTTGTCAAGGTAACACATATCAAGTAGTTCTCACCACCAAG
GGCCGATGCCAAGGATGGAGGATGATGGTTGTGCTACAACCCCTACACAACATAGGATAATTGAAGAATAATGTGCAACT
AACTGAACACATGGCCTAGAACTGATGGTTTTATGTTGCATTTGCCTGTCTACGACTATCTGCCGTTGCAACGCACGGGC
AATTACCTAGTCTTTGTTAAAAAAAGAGAAAGAAATATTCTCTTACAATCCTATTTGTTTTTCTTATACGATAATAATCT
ACGGTCCGCATCTTCTTCTCATACGATTGGTACTATGAATATACGTAAAAAAAGTAAACAGAGTCCGTGGTTTTAAGAAA
TAGGAAAAG--AAAAGGAGTTATGCAAAGACACGGCGAGCAACCCTAGAAGCCGCATCTTCCACTCAACCAATATATTTT
TCTTTCATCTAGTATATCATATTAAAAAAAAGGAGGAATCCTACAATCAGCATCAGGGCCGCTGGCTCCAGATCGGACGG
TGGAGCGGGCAGAGC--CGCGCGCCCAGGGGGCCTAATAATTGGCGTCCCCCCATCCGCCCCCGAGCCGCCCCCAAACCC
CGTCCCGTCAAACGCAAAGAAGACAAGCGCAGCAAGTAGGGTTAGGAGAGCCGGCGGCGGCGGCGGCGGCGGAAAGCGAG
AGCTCCAGCGGGCCGTCGGGAGGGAACCACCCTCGTCGTCGGAGATGACGGGCAAGGCGAAGCCGAAGAAGCACACGGCC
AAGGAGATCGCGGCTAAGATCGACGCGGCGACGACCAACCGCGGCGGGGGCAAGGCCGGGCAGAAGGACCGGCTCGGGCA
GGAGAAGGGCGGCCACGCCAAGATGGAGTGCCCGCTCTGCAAGGTGACGGCCCCCGACGTCAAGTCGATGCAGATCCACC
ACGAGGCGCGCCACCCCAAGCTCCCCTTCGACCCCGAGAAGATCAACAACCTGCACGGCTCCACCGCCGCGGCTCCCGCG
GCGGCGGCCGCCGTCGCCTCCACCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGACGGGGTAATCTAAACC
CCCCA-----TACCCTACCTTGCATCCAAACCCCTCTATGGTCGGTCGTCCGCTCC-----GATCTACTATGGTCGTCGC
CTGCATCTGCTGTCTTAAGTTTACTATATGCTGCCGCTGATGCTGC------TGCTGCTCTAAAATATTGATGCTGTTGC
TGCTGCTGATGCGTGTGGTGTGTCG---TGTGCTAGACGCGTGATTTTTTTTTACCTGTACACATGAGGCCGTGTGGCCT
CATTGCCATGTTTAATTACCTGTCGCTACTCTAAGATGCTGGCAAATTGTTTGCTGATGTTAATGTCTAGTGGCGCTCGA
GAGATCTG-AAAGATCTGCTGTCGATCCAGTTCCTCCAATTGGCGGCTAAAGTGCATGAATCGGGGATTTGCGCTTGAGT
TTCTTATCC-----CGCCGTAAGAAGTATTTTACCTCGTCGATTCTCGGCTATTGATGAAGCTGTCCCTTTTTAGCAAGG
GAGCAACATCGTTT---------------------------------------------------------CCATACACA
ACTCCATGCTTT------AGAATGCTCAACTCTCCTTT-TTCTTCCTGCCATTCGGTTACTTATGCCATGTTCATTAAGC
ATCATGGATCGATCGGTCAGAATTGGTCTCCTGGGAGTATTCTCAATATTCCTGGTGGTATCACTGGCAGCCTTGCTGCC
CCCAGTTTGATGATGAATGA--------------ATTTGCCATTGCAGCGATGAACAGAAATGAGGCCTCCACAGCTTCA
AGCGCCTCTTCTAAGTCTCTGTTTGCCGTCGCAATGGATTGTTATGACTACTGTCTCGTTTGATCGGTTGATCGTTTTAA
GATATTTGGTTGTCTTGTAATCGGATATATTATGCGCTCCAGAACATCTGAGATGTACTAAACTTGAGCCTAAATAACTG
GTTGCTGTCAATTTGCTTGGTACCGTCTTAGAGTGTGGCAACTGATGTTGGGGGATAATCACCTCAACTGAACGCTGCCC
TTTATAACAATGA---ATAGTCTGGTTTTGTCGATG--CACTTTTGTTATTGCATTGCCCCACTGAAGAGGCATTGCAAT
GATGTGATATTATGATATGCTTGAAGCACGCCTAGTGACTTTGATGGCATGGAATCTTTGATGCTTCAAGCAATGGTGAG
AAGTACTTTATTAACATTCCCGCAGTTCATTTTGATTGCATGGAATTGATGCTGAAATTATTGTCAGCCATGAAACTAGT
AAATTGTTACCTGGAGGTCGAAGGTCCATTCATTGGTGTGACTTTTCTTCTCTAAGTTTGGTTTTG----GCTTTTTAAA
ATGAGCTTAATATTCAGTGTTAACCTCACTGTAACTGCATCATAGCTCACTTATGTTTTGTAT-----------------
----AGTATGTCCGTTTAACTGGAATCAGTACGCCGGAATTCCCTTTGGCGTAACCAGTGCTGCTTAAGGGCCATGTTTG
TAGTGCAATTGCATATGCATTAGGTGGCTGAAAACATTTTACGTTTCAGCTGCCTTTGGCATCCAATGGCTGCGTTTTCT
TCTCCCTCACCACGCCGCCGCTTCCTCCCTCACGCACCCCATTTCTTGTGAGGTTATGGCGAGCCCTTGCCGGTGGTGCC
GCAGCCTGTCGCTAGAAACTGTAGGTAAAATAACATGGCCAAGTACTACCAAACTGTAGGAAAAATAACATGTCCAAGTA
CTACCACCGTTCACAAATATATGGAAGAACAAACACAATAAAATTTCTCTATAT
>chr3B_1
GACTGTGGCATTGCAACTATATATATAGAGAGGGAAGTAACACGCTATATATACTGGTGGCCATGCGA------------
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-----------------------------------------------------------GCGTCGGTGACGGATCTTGGA
CATGGATGATT---------------------------------------------------------------------
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-------------------AAGATGCAGAGGCGGTGGAGCATGGTTGTGTCAC---------------------------
------------------AGCTTCCTTTTGA-------------------------------------------------
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------------------------------------------------------------------ATCGGTGGTGTTGC
TGCTTGCGTGTCGTCCTTGCTCGACCTAGGCATCCT--------------------------------------------
------------------------------------------------------TGGTATTCATATCTTTGTATCAAAGT
C-------------------------------------ATTGGCGG-------GGATCATCCAGTGAACTCCGCATGACT
TTGTCCTAG-----CACCGCTACCA---------------------------------------------TTTGTCAAGG
TAACACATATCAAGTAGTTCTCACCACCAAGGGCCGATGCCAAGGATGGAGGATGATGGTTGTGCTACAACCCCTACACA
ACATAGGATAATTGAAGAATAATGTGCAACTAACTGAACACATGGCCTAGAACTGA------------------------
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--TGGTTTTATGTTGCATTTGCCTGTCTACGACTATCTGCCGTTGCAACGCACGGGC-----------------------
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---------------AATTACCTAGTTTTTTAGAAAAA------------------------------------------
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>chr7D_595
ATGAAAAC------------------------------------------------------------------------
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----------------------------------------------ATAAAAAACGAATAGAGCCCGTGGCTTAAATAAA
GAATAGAAAAAAAAAAGAGTTATGCAAAGACACGGCGAGCAACCCTAGAAGCCGCATCTTCCATCCAACCAACATATTTT
TCTTCCATCTTTCATAGTATAA-AAAAAAAAGGAGGAATCCTAGAAGGGCCATCAGGGCCGCTGGCTCCAGATCGGACGG
CGGAGCGGGCGGAGCAGCGCGC-CCCAGGGGGCCTAATAATTGGCG-CCCCCCATCCGCACCCGAGCCGCCCCCAACCCC
CGTCCCGTCAAACGCAAAGAAGACAAGCGCAGCAAGTAGGGTTAGGAGAGCCGGCGGCGGCGGCGGCGGCGGAAAGCGAG
AGCTCCAGCGGGCCGTC-GGGAGGAACCGGCCTCCTCGTCGGAGATGACGGGCAAGGCGAAGCCGAAGAAGCACACGGCC
AAGGAGATCGCGGCGAAGATCGACGCGGCGACGACCAACCGCGGCGGGGGCAAGGCCGGGCAGAAGGACCGGCTCGGGCA
GGAGAAGGGCGGCCACGCCAAGATGGAGTGCCCGCTCTGCAAGGTGACGGCCCCCGACGTCAAGTCGATGCAGATCCACC
ACGAGGCGCGCCACCCCAAGCTCCCCTTCGACCCGGACAAGATCAACAACCTGCACGGCTCCACCGCCGCCGCGCCCGCC
---GCGGCCGCCGTCGCCTCCACCTCCAAGCCCAAGCCCGGCATCCGCGGCAGCCTCAAGAAGACGGGGTAATCTAAACC
CCCCCTACCCTACCCTACCTTGCATCCAAACCCCTCTATGGTCG---------TCCGCTCCGATCTGCCGTGGTCGTCGC
CTGCATCTGCTGTCTTAAGTTTAGTA----CTGCCGCTGATGCTGCCGTTGCTGCTGCTCTAAAATATTGATGCTGTTGC
TGCTGCTGATGCGTGTGGTGTGTCGTCGTGTGATAGACGCGTGATTTC-TTTTCCCTGTATACTTGAGGCCGTGTGGCCT
CATCGCCATGTTTAATTACCTGTCGCTACTCTAAGATGCTGGCAAATTGTTTGCTGATGTTAATGTCTAGTGGCGCTCGA
GCGATCTGAAAAGATCTGCTGCCGATCCAGTTCCTCCAATTGGCGGCTAAAGTGCGTGAATCGGGGATTTGCGCTTGTGT
TAGTGTCCTCGGTGCGCCGTAAGAAGTATTTTACCTCGTTGATTCTCAGCTATTGATGAAGCTGCCCCTTTTTAGCAAGG
GAGGGATGTCGATTT---------------------------------------------------------CATACACA
AGTCCATGCTTT------AGAATGCTCAACTCTCCTTT-TTCTTCGTGCCATGTGGTTCCTTATGCCATGTTCATTATGC
ATCATCGATCGATCGGTCAGAATTGGTATCCTGGGAGTATGGTTGATACTCCTGGTGGTATCACTGGCAGCCTTGCTGCC
CTTAGTTTGATGATGAATGA--------------ATCTGCCATTGCAGCGATGAACAGAAATGAGGCCTCCACAGCTTCA
AGCGCCTCTTCTAAGTCTCTGTTTGCCGTAGCAATGGATTGTTATGACCACTGTCTCGTTTGGTCGGT----CGTTTTAA
GATATTTGGTTGTCTTGTAATCGGATATATTATGCGCTCCAGAACATCTGGGATGAGCTAAAC-TGAGCCTAAATAACTG
GTTGCTGTCAATTTGCTTGGTACCTAGA---AGTGTGGCAACTGATGTTGGGGGATAAACACCTCAACTGAACGCTGCCC
TTTATAACAATGATGAATAGTCTGGCGTTGTCGATG--CACTTTTGTTATTGCATTG-CCCACTGAAGAGGCATTGCAAT
GATGTGATATTATGATATGCTTGAAGCACGCCTAGTGACTTTGATGGCATGGAATCTTTGATGCTTGAAGCAATGGTGAG
AAGTACTTTCCTAC-------------CATTTTGATTGAATGGAATTGATGCTGAAATTAT-GTCAGCCATGAAAGTAGT
AAATTGTTACCTGGAGGTCGAAGGTCCATTCACTGGTGTGACTTTTCGTCTCCACTTAAACCTGGTGGCAGCTTTTTAAA
ACGAGCTTAACATTCTGTGTTACCATCACTGTAACTGCATCATAGCTCGCTTGTGTTTTGCATGTAGCAACATAGTGGTA
TTTTAGTTTGTGCATTTAACTGGAATCAGCACGCCGGAGTTCCC-TTGGCGTAACCAGTGCTGCTTAAGGGCGGTGTTTG
GAGCGCA-------------------------------------------------------------------------
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>chr7B_752
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---------------------------------AGGAATCCTACAATCATCATCAGGGCCGCTGGCTCCAGATCGGACGG
CGGAGCGAGCACAGC--CGCGC-CCCAGGGGGCCTAATAATTGGCG-CCCCCCATCCGCCCCCGAGCCGCCCCCAACCCC
CGTCCCGTCAAACGCAAAGAAGACAAGCGCAACAAGTAGGGTTAGGAGAGGAGGAGTCGGCGGCGGCGGCGGAAAGCGAG
AGC------GGGTCGTC-GGAAGGAACCGCCCTCGTCGTCGGAGATGACGGGCAAGGCGAAGCCGAAGAAGCACACGGCC
AAGGAGATCGCGGCGAAGATCGACGCGGCGACGACCAACCGCGGCGGGGGCAAGGCCGGGCAGAAGGACCGGCTCGGGCA
GGAGAAGGGCGGCCACGCCAAGATGGAGTGCCCGCTCTGCAAGGTGACAGCCCCGGACGTCAAGTCGATGCAGATCCACC
ACGAGGCGCGCCACCCCAAGCTCCCCTTCGACCCGGACAAGATCAACAACCTGCACGGCTCCACCGCCGCCGCGCCCGCC
---GCGGCGGCCGTCGCGTCCACCTCCAAGCCCAAGCCCGGCATCCGCGGCAGCCTCAAGAAGACGGGGTAATCTAAACC
C------CCCTACCCTACCTTGCATCCAAACCCCCCTATGGTCG---------TCC-----GATCTGCGGTGGTCGTCGC
CTGCATCTGCTGTCTTA-GTTTACTA----CTGCCGCTGATGCTGCCGTTGCTGCTGCTCTAAATTATTGCCGCTGTTGC
TGCTGCCGATGCGTGTGGTGTGTCG---TGTGATAGATGCGTGATTTC-TTTTCCCTGTATACTTGAGGCCGTGTGGCCT
CGTCGCCATGTTTAATTACCTGTCGCTACTCTAAGATGCTGGCAAATTGTTTGCTGATATTAATGTCTAGTGGCGCTCGA
GCGATCTGAAAAGATCTGCTGTCGAGCCAGTTCCTCCAATTGGCTGCTAAAGTGCATGAATCGGGGATTTGCGCTTGTGT
TAGTGTCCTCGGTGCGCCGTGAGAAGTATTGATTTAGTTGT-----------------------CCCTTTTTTAGCAAGG
GAACAACATCGTTT---------------------------------------------------------CCATACACA
AATCCATGCTTT------AGAATGCTCAACTCTCCTTTTTTCTTCGTGCCATGCGGTTCCTTATGCCATGTTCATTATGC
ATCATCGATCGATCGGTCAGAATTGGTCTCCTGGGAGTATGGTTGATACTCCTGGTGGTATCACTGGCAGCCTAGCTGCT
CTCAGTTTGATGATGAATGA--------------ATCTGCCATTGCAGCGATGAACAGAAATGAGGCCTCCACAGCTTCA
AGCGCCTCTTCTAAGTCTCTGTTTGCCGTCGCAATGGATTGTTATGACTACTGTCTTGTTTGGTCGGT----CGTTTTAA
GATATTTGGTTGTCTTGTAATCGGATATATTATGTGCTCCAGAACATCTGGGATGAGCTAAAC-TGAGCCTAAATAACTG
GTTGCTGTCAATTTGCTTGGTACCTAGA---AGGGTGGCAACTGATGTTGTGGGATAAACACCTTAACTAATCGCTGCCC
TTTATAACAATGATGAATAGTCTAGTGTTGTTGATAAACACCTTAGTTATTGCATTG-CCCACTGAAGAGGCATTGCAAT
GATGTGATATTATGATATGCTTGATACC-----------------------GAATCCTTGATGCTTCAAGCAATGGTGAG
AAGTACTTTTCTAC-------------CATTC------------------------------------------------
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>SNPs
------------------------------------------------------------------S-SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-----SSS--S----S------S--S--S---
S-SS-S--S------S-----------------------------------------------SS-------S-------
----S-----SSS---SS---SS--------------------------S------------------------------
S---------------------S-----------------------S-----------------------------S---
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-----------------S---S------S---------------------------------------------------
--------------S-----------------------------------------------------------------
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----------------------------------S--S--------------------------------S--S-----S
SSS---------------------------------------S-------------------------------------
----S---------------------------------------SSSSSSSSS-------------S-SS----------
--------------------------SSSS--------------------------------------------------
--------------------------------S--------------SS----S------S--S----------------
---S----------------------------------------------------------------------------
-S------------------------------------------------------------------------------
--S-SS--S------------------------------S-------S----------------S---------------
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----------------------------------------------------S-----S------------------S--
-----S----------------------------------SS-SS---S-------------------------------
-S----------------------------------S-------------------------------------------
--------------------------------------------------------------S-----SSSS--------
--------------------------------------------------S----SS------S----------------
------------------------SSSSSSS---------------------------S---------------------
---------------------------------------------------------S----------------------
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---------SS--SSSSSSSSSSSSSS-----------S----------------------S-------------S----
--------------------------------S--------------S----S-SS-SSSSS-SSS--------------
-S--------S----S------S-S-----------------------S---S-------S-------------------
-------S---S-S---------------S--------S-----S---------------------------SS------
S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_286
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--------------------------AGCACCGCTACCATTTGTCA----------------------------------
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>reverse_1406
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---------------------------------------------TCGTCCGCTCCGATCTACTA---------------
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>forward_489
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---------------------------------------------------------------------AACGCACGGGC
AATTACCTA-----------------------------------------------------------------------
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>reverse_2049
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------------------------------------------------TTCCTGGTGGTATCACTGGC------------
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>forward_581
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-CGGTCCGCATCTTCTTCTCA-----------------------------------------------------------
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>reverse_2379
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----------------------------------------------------------TCACCTCAACTGAACGCTGC--
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