>input_sequence_62461
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--------------ATGGGGGCGTGTGCGACGAAGCCTGCTGATCTCAAGGTAAAAGGTGAGGCGCCGGTGGTTCTGGAG
GACGCCGCGGAGAAGAAGGTCGCCTGTGTGGCTGTGGCTGAAACTGAACCGGCCGCCGATGGGAGTCGCCGGAGGTCTCT
CAGCGACCTGCTCAAAGAGGTACACAGCTTGTTGATTTCCTCTTCACTCGCTACTTTAACACGGTGACAGAAGAGCATGT
TTTGAGTTAGCAGTTGCGGACATGTTCTCTTTATGTTTATTAGTCCATTAGTCACATGATAAAACTTGGTTTGGTAGGGT
GTCAACAAGTTCC-ATGGATAGCAGCAGGGGATTTCTAACACCCCCTTTTATCTGGATGCACGGTGTATGCTGCAATTTA
TATTATGCGATTTGCACTTCACGAGTCAAGAAGCTCTACTGATTCTGCTCCTTTTGACAGAACGACGAGAGTGACGTCGA
GGCTCCGGAGGCAGAGAAGAAGGCTGAAGAACCTGCAGCAGCTACCGCTGTTGAAAATGGAGCGACAGAGCAGCAGCTAG
CAGTTGAGCCCTCCACTGCGACGACCGAGCCAAATCACACGGCCGAAATCCTGGAGCCAGAGGATGCACGGGATGCGCAG
GTGGTGGAAGAAGAGAAGCGTGTGGATCCTGATTCAGTTCAGGTTGCAATTTATCTTTATGCGATTTTCACTTCATGAGT
CAAGAAGCTCTACTAAATCTGCTCCTTTTGACAGAACGACGAGAGTGACGTCGAGGCTCCGGCGG------CAGAGAAGA
AGGCTGAAGAACCTGCAGCAGCTACCGCTGATGAAAGTGAAGCGACGGAGGAGCAGCTAGCAGTTGAGCCCTCCATTGCG
ACGACCGAGCCAAATCACACGGCCGAAATCCTGGAGCCTGAGGCTGCAGAGGATCCCCAGACACATCCACAGGTGGTGGA
AGAAGAGAAACATGTGGATCCTGATTCAGTTCAGGTTACTGTTGTTGATTCTGCTGAAAGTGTTGAAGAGAGCAAGGTCG
TCGCCGATGCGTCTACCTGA------------------------------------------------------------
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>chr5B_1_TraesCS5B01G204500
TGTCTTTCAGGGCCAGGCTACTGCTTTGCCCCGCCAAACAAGGATGT-------TGCCGTATGTCCATGGAACCCGGAAA
ATGTTCCCGGCGTTGTAATTCAACGGAGGTGCTGCTGCTGATTTCC-------CACTGTTGCTGTCAGAGTGCCTCTGAA
TGTGTGAACTAGCAAGCCGTGTTTCTGCGTGCTGGTTTCAATCTTCATCTCCG--TTTTGGCCGTAGCAGAAGGTCTTGC
TTGTCCCTGTCCAGATT-AAAATAAAAGGGTTAGTTGTCTCCGGTA--GTGCCTCATGCTCAACTACTGGTTGA----GA
GTTTATCTTATCAACCGAGGTTGGATGCTCCGTATATATGAGATTCCAAATTCCAAGAACAATGATTTTGATGAGCAATC
ATGGCCAGGGATACAAACAGGAGGCTTTCCTAATTTCCTGAGGGCCAAATTAACAACGAGAACCAGCTGTGTCTGCATGA
TGATTACCATTCTGCCAGAAGGGCCATTGAATCATTATGC----ACGGACGTAGTGTGATCAGCATGAACGGGAAAGGGC
ACC-------ACCGCACCTAGTGGCCGGGTGCTAGTTGCGGTGGTTAGGAAATTCCGGAGCCTGCCCTCGGACGC-----
---CCAGCAGGCAGCAGCACAACCGGCCGCCGCCGTCCCAAAGTCCAATGGGCAGCAGGTA----G---TACTACCATCG
ATGATGGGATGGGTAGCCGCATATGATATGCGCAATGACAGCACCACGCAACGAGTTTGTTATTCAGGAGTTGCCGGGTC
CTGCGCCCCAGCAGGACGTTGACCGGAGTCTCCTTGCATTGCAGCATAGATTATACTAGCAGTACCATCTTGGCCGGCCT
CAATGGCAGGTAGCGGAGTACCTAACCTACCGGGTACCGGCTGGTCAGCTGGAGCACATCCGCCGCTGCATATAACGAAT
ACTTCGTGCTGC-----GTGTGTGTGGGTGTGTTCCTGGCTATCTGGTTCTCGCCTCTGTCAACCCTCGTTCTAGCGGCG
GCGCTGCAGTGGAGATGGGGGCGTGTGCGACGAAGCCTGCTGATCTCAAGGTAAAAGGTGAGGCGCCGGTGGTTCTGGAG
GACGCCGCGGAGAAGAAGGTCGCCTGTGTGGCTGTGGCTGAAACTGAACCGGCCGCCGATGGGAGTCGCCGGAGGTCTCT
CAGCGACCTGCTCAAAGAGGTACACAGCTTGTTGATTTCCTCTTCACTCGCTACTTTAACACGGTGACAGAAGAGCATGT
TTTGAGTTAGCAGTTGCGGACATGTTCTCTTTATGTTTATTAGTCCATTAGTCACATGATAAAACTTGGTTTGGTAGGGT
GTCAACAAGTTCC-ATGGATAGCAGCAGGGGATTTCTAACACCCCCTTTTATCTGGATGCACGGTGTATGCTGCAATTTA
TATTATGCGATTTGCACTTCACGAGTCAAGAAGCTCTACTGATTCTGCTCCTTTTGACAGAACGACGAGAGTGACGTCGA
GGCTCCGGAGGCAGAGAAGAAGGCTGAAGAACCTGCAGCAGCTACCGCTGTTGAAAATGGAGCGACAGAGCAGCAGCTAG
CAGTTGAGCCCTCCACTGCGACGACCGAGCCAAATCACACGGCCGAAATCCTGGAGCCAGAGGATGCACGGGATGCGCAG
GTGGTGGAAGAAGAGAAGCGTGTGGATCCTGATTCAGTTCAGGTTGCAATTTATCTTTATGCGATTTTCACTTCATGAGT
CAAGAAGCTCTACTAAATCTGCTCCTTTTGACAGAACGACGAGAGTGACGTCGAGGCTCCGGCGG------CAGAGAAGA
AGGCTGAAGAACCTGCAGCAGCTACCGCTGATGAAAGTGAAGCGACGGAGGAGCAGCTAGCAGTTGAGCCCTCCATTGCG
ACGACCGAGCCAAATCACACGGCCGAAATCCTGGAGCCTGAGGCTGCAGAGGATCCCCAGACACATCCACAGGTGGTGGA
AGAAGAGAAACATGTGGATCCTGATTCAGTTCAGGTTACTGTTGTTGATTCTGCTGAAAGTGTTGAAGAGAGCAAGGTCG
TCGCCGATGCGTCTACCTGAATTATTATTTATTTATTTTGAGGAAATATTTGTGCCCCTGAGATTGATAATGGTATTTTC
TTGTTCATTTCCGTGCTGAAACGCTCAGTTTCTTT----TTTCTTTTTCTTTTTCTGTGTATGCATTGCATGCCCGGTGG
TGTAATA--TAGATTTTATTGTCATTTCTCTGTTTATGTCACCTCTTCAGTACACTAGATCTTATTGTCATTTGACGGTT
TATGCAACCTTAGGGCATCTTCAATGTCGACCCACAAATTTTCTCCTGCATCTGTCGGCGGATACGGATGCGGGAGGCCG
CTATCCGACCATAGCCGCACATATTTCAAACTCTTTTCCAACAAACCGGATGAAATTCATGCAAACTAGACCGGATTTTA
AATAAACATGACGGATTTCATTCAAACCAGACTAACACGGTTACATTTTGGACATATTTTCAACTAAAAACAAAACCGAA
CTAGCCTATGGCCAGCGTCGGCATATATCCATTCCGACGACATGATATCCTCGACTAGTCTACTGCCAGCCGCGGCGGGT
CTCTAACGTCGTCCCCATGACCAACAGTGGTGAGGCCCAGAAGTATATGCTTCAGCACAAAGGACGACTCGCTTCCCCAT
CGCTCATCGGAGTGGAACCGCCGCCTGATGCTTCAATCGGAGGGGAAGGGTCCCTACGCTGCACGAACCAAGGTTGGTTC
TTAGGTAAGGGGATGATGGTGGCCGGCAGGAGGGCAAGACACCGACCTTCATGGGACCCAAGCGGCGGCGGCCTCCCGTG
TTCTACTTCTCCTCGATAATGGCGGCGAGCATGAACGTGCTGGCCGCTAGCTCGTCGATATCCGCGCACCCGGCTTCTTT
CTCTGCCTGCATGGCGAGGCTACGTACGTGCGCATCGCGGCGGATGGCGCGGTCGCAGGTGCTGGAGGCGTGGTACGACG
CAGCGTCGTCGACGGCAGCGACGATGCCCGTGCCGCCAAGCTACCTGACGTGTCGGCCTGGAGCAA
>chr5D_1
TGTCTTTCA-GGCCCGGCTATTGCTTTTCCCCGGCGAACAAGGATGT-------TGCCGTATGTCCATGGAACCCGGGAA
ATGTTCCTGACACTGTAATTCAACGGAGGTGCTGCTGCTGCTGATTTGCCTTTCACCGTTGCTGTCAGAATGCCTCTGAA
TGTGTCAACGAGCAAGCCGTGTTTCTGCGTGCTGGTTTCAATCTTCATCTCTCCATTTTGGCCGTAGCAGATGGTCTTGC
CTGTCCTTGTCCAGA-T-AAAATAAAAGGGTTAGTTGTTTCCGGTA--GTGCCTGATACTCAACCACCGCTACCGGTTGA
GTTTATCTTATCAACCGAGGTTGGATGCTCCGCATATATGAGATTCCAAATTCCAAGAACAATGATTCTGATGAGCAATC
ATGGCCAGGGAAACAAACAGGAGGCTTTCCTAATTTCCCGAGGGCCAGATTAACAACGAGAACCAGCTGTGTCTGTATGA
TGATTACCATTCTGCCAGAAGGGCCACTGAATCATTATGCACGGACGGACGTAGTGTGATGAGCATGAACGGGAAAGGGC
ACCGCACCGCACC-----TAGTGGGC----GCTAGTTGCGGCGGTTAGGAAATTCCGGAGCCTGCCCTGAGATGCCCAAC
ACACCAGCAGGCAGCAGCACAACCGGCCGCCGCCGTCCCAAAGTCCAATGGCAAGCAGCTAGTACG---TACTAACACCG
ATGATGGGATGGGCAGCCGCATATGATATGCGCAATGACAGCACCACGCGACGAGTTTGTTATTCAGGAGTTGCCGGGTC
CTGCGCCCCAGCAGGACGTTGACCGGAGTCTCCTTGCATTGCAGCATAGATTATAGGTACTACT--ATCTTGGCCAGCCT
CCATGGCAGGTAGCGGAGTACCTAAACC------TACCGGCTGGTCAGCTGGAGCACATCCGCCGCTGCATATAACGAAT
ACCGCTTCCTGCTGCGTGTGTGTGGGGGGGTGTTCCTGGCTATCTGGTTCTTGCCTCTGTCAACCCTTGTTCTAGCGGCG
GCGCTGCAGTGGAGATGGGAGCGTGTGCGACGAAGCCTGCTGATCTCAAGGTAGAAGGTGAGGCGCCGGTGGTTCTGGAG
GACGCCGCGGAGAAGAAGGTCGCTGGTGTGGCTGTGGCTGAAACTGAACCGGCCGCCGACGGGATTCGCCGGAGGTCTCT
TAGCGACCTGCTCAAAGAGGTACACAGCT--TTGATTTCCTCTTCACTCGCTACTTCAATACAGTGACAGAAGAGCATGT
TTTGATTTAGCAGTTGCGGTCGTGTTCTCTTCATGTTTATTAGTCCATGAGTCAGATGATAAAACTTGGTTTGGTAGGGT
GTCAACAAGTTCCCATGGATAGCAGCAGGGGGTTTCTAACATCCCCTTTTATCTGGAT----GGTGTATGCTGCAATTTA
TATTATGCGATTTGCACTTCACGAGTCAAGAAGCTCTACTGATTCTGCTCCTTTTGACAGAACGACGAGAGTGACGTCGA
GGCTCCGGAGGCGGAGAAGAAGGCTGAAGAACCTGCAGCAGCTACCGCTGATGAAAATGGAGCGACAGAGGAGCAGCTAG
CAGTTGAGCCCTCCACTGCGGCGACCGAGCCAAATCACACGGCCGAAATCCTGGAGCCTGAGGATGCAGAGGATGCGCAG
GTGGTGGAAGAAGAGAAACGTGTGGATCCTGATTCAGTTCAGGTTGCAATTTATCTTTATGCGATTTGCACTTGATGAGT
CAAGAAGCTCTACTGAATCTGCTCCTTTTGACAGAACGACGAGGCTGACGTCGAGGCTCCTGAGGCTGAGCCAGAGAAGA
AGGCTGAAGAACCAGCAGCAGCTACCGCTGGTGAAAATGAAGCGACAGAGGAGCAGCTAGCAGTGGAGCCCTCCATTGCG
ACGACCGAGCCAAATCACACGGCCGAAATCCTGGAGCCTGAGGCCGCAGAGGATCCCCAGACACATGCGCAGGCGGTGGA
AGAAGAGAAGCGTGTGGATCCTGATTCAGTTCAGGTTACTGTTGTTGTTTCTGCTGAAAGTGCTGAACAGAGCAAGGTCG
TCGCCGATGCGTCTGCCTGAATTATTATTTATTTATTGTGAGGAAATATTTATGCCCCTGAGATTGATAATGGT-TTTTT
TTGTTCATTTCCGTGCTGTAATGCTCAGTTTTTTTCCTTTTTG------TTTTTCTGTGTATGCATTGCATGCCCGGTGG
TGTAATAGCTAGATTTTATTGCCATTTCTCTGTTTATGCAACCTCATCA-----CTAGATTTTATTGTCATTTCACGGTT
TATGCAATCTTAGGGCATCT-CAACGACGATTCTCAAATTTCCTTCCGCATCCGTCCACGGACACGGATGCAAGAGGCCG
CTATCCAACCGCAACCGTCC--ATTTCAAACTCTTTTTCAACAAACCGGATGAAATTCATGCAAACTCGGCCGGATTTCA
TATAAACATGACGAATTTCATAAAAACCGAACTAAGACGGTTACATTTTGGACATATTTTCAACTGAAAACGAAACCGGA
CTAGTCTACAGTCGGCGCCGACAGATATCCATTCCGACGACATGATACCCTCGACTAGTCTACTGCCGGCCGCGGCGGGT
CTCCAATGTCGGCCCCATGACCGGCAGCGGTGAGCCTCGGAGGTATATGCTTCGGCGCAAAGGACGGCTCGCTTCCCCAC
CACTCACCGGAGTGGAACTGCCGCCTGATGCTTCAGCCGGAGGGGAAGGGTCCCTACGCTGCACGAACCAAGGTTGGTTC
TTAGGTAA-GGGAAAATGGTGGCCGGCGAGAGGGCAAGACACCG------------------------------------
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>chr5A_1
TGTCTTTCA-GGCCCGGCTACTGCTTTTCCCCGGCAAACAAGGATGTTGCCGTATGGCGTATGTCCATGGAACTCGGGAA
ATGTTACTGACAC--TAATTCAACGGAGCTGCTGGTGCTGCTGATTTGCCTTTCAATGTTGCTGTCAGAATGCCTCTGAA
TGTGTCAACGAGCAAGCCGTGTTTCTGCGTGCTGGTTTCAATCTTCATCTCTCCATTTTGGCCGTAGCAGAAGGTCTTGC
CTGTCCCTGTCCAGA-TTAAAATAAAAGCGTTAGTTACTTCCGGTAGTGTGCCTGATACTCAACTACCGGTTGA----GA
GTTTATCTTATCAACCGAGGTTGGATGCTGCGTATATACGAGATTCCAAATTCCAAGAACAATGATTCTGACGAGCAATC
ATGGCCAGGGAAACAAACAGGAGGCTTTTCTAATTTCCCGAGGGCCAAATTAACAACGAGAACCAGCTGTTTCTGTAGGA
TGATTGCCATTCTGCCAGAAGGGCCACTGCATCATTATGCACGGACGGACGTAGTGTGATGAGCATGAACGGGAAAGGGC
ACCGCACCGCACCGCGCCTAGTGGGC----GCTAGTTGCGGTGGTTAGGAAATTCCGGAGCCTGCCCTGGGACGCCCAAC
ACACCGGCAGGCAGCAGCACAACCGGCCGCCGCCGTCCCAAAGTCCAATGGGCAGCAGGAA----GTACTACTAACATCG
ATGATGGGATGGGCAGCCGCATATGATATGCGCAATGACAGCACCACGCAGCGAGTTTGTTATTCAGGAGTTGCCGGGTC
CTGCGCCCCAGCAGGACGTTGACCGGAGTCTCCTTGCATTGCAGCATAGAATATAGAACTG------TCTTGGCCGGCCT
CAATGGCAGGTAGCGGAGTGCCTAACCTACCGGGTACCGGCTGGTCAGCTGGAGCACATCCGCCGCTGCATATAACGAAT
ACCGCTTCCTGCTGCGTGTGTGTGTGGGTGTGTTCCTGGCTATCTGGTTCTTGACTCCGTCAACCCTCGCTCTAGCGGCG
GCGCTGCAGTGGAGATGGGGGCGTGTGCGACGAAGCCTGCTGACCTCAAGGTAGAAGGTGAGGCGCCGGAGGTTCTGGAG
GACGCCGCGGAGAAGAACGTCGCCGGTGTGGCTGTGGCTGAAACTGAACCGGCCGCCGACGGGATTCGCCGGAGGTCTCT
CAGCGACCTGCTCAAAGAGGTACACAGCT--TTGATTTCCTCTTCACTCGCTACTTTAATACAGTGACAGAAGAGCAGGT
TTTGATTTAGCAGTTGCGGTCATGTT----------TCATTAGTCCATTAGTCACACGATAAAACTTGGTTTGGTAGGGT
GTCAACAAGTTCC-ATGGATAGCAGCAGGGGATTTCTAACATCCCCTTTTATCTGGAT----GGTGTATCCTGCAATTT-
---TATGCGATTTGCACTTCATGAGTCGAGAAGCTCTACTGATTCTGCTCCTTTTGACAGAACGACGAGAGTGACGTCGA
GGCTCCGGAGGCAGAGAAGAAGGCTGAAGAACCTGCAGCAGCTACCGCTGATGAAAATGGAGCGACAGAGGAGCAGCTAG
CAGTTGAGCCCTCCACTGCGACGACCGAGCCAAATCACACGGCCGAAATCCTGGAGCCAGAGGATGCACATGACGCGCAG
GTGGTGGAAGAAGAGAAACGTGTGGATCCTGATTCAGTTCAGGTTGCAATTTATCTTTATGCGATTTGCACTTGATGAGT
CAAGAAGCTCTACTGAATCTGCTCCTTTTGACAGAACGACGAGACTGACGACGAAGCTCCTGAGGCTGAGCCAGAGAAGA
AGGCTGAAGAACCAGCAGCAGCTACCGCTGATGAAAATGAAGTGACAGAGGAGCAGCTAGCAGTTGAGCCCTCCGTTGCG
ACGACCGAGCCAAATCACACGGCCGAAATCCTGGAGCCTGAGGCTGCAGAGGATCCCCAGACACATGCACAGGTGGTGGA
AGAAGAGAAACGTGTGGATCCTGATTCAGTTCAGGTTACTGTTGTTGATTCTACTGAAAGTGTTGAAGAGAGCAAGGTCG
TGGCCGATACGTCTACCTGAATTATTCTTTATTTATTTTGAGGAAATATTTGTGCCCCTGAGATTGATAATGGTATTTTC
TTGTTCATTTCCGTGCTGTAATGCTCAGTTTTTTT----TTGG------TTTTTCTGTGTATGTATTGCATGCCTGGTGG
TGTAATAGCTAGATTTTATTGCCATTTCCTTGTTTATGCAACGTTATTA-----CTAGATTTTATTGTCATGTCACGGTT
TATGCAACTTTAGGGCGTCTCTAACGGTGACCCGCAAATTTCTTCCCGCATCCGTCCATGAACACGGATGCGGGATGCCG
CTATTCAACTGCAT------ATATTTCAAACTCTTTTTCAACAAAGCGGATGAAATTCATGCAAACTGGGCTGTATTTTA
TATAAACACGACGAATTTCATACAAACCGGAC------------------------------------------------
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>SNPs
---------S----S------------S-----S-------------------------------------------S--
-------S-S-SS---------------------------S-SSSS-----------------------S----------
-----S---S-----------------------------------------SS---------------------------
S--------------S----------------------S---------------S--S---------S------------
-------------------------------------------------------------------S------------
-----------S--------------------------S------------------------------------S----
--------------------------S---------------------------------S-------------------
---------------S--------S-SSSS--------------------------------------S-----------
--------------------------------------------------------------------------S-----
-------------S------------------------------------------------------------------
-------------------------------------------------------SS-S-SSSSSS--------------
--------------------------------------------------------------------------------
--SS-S-S-------------------------------------------S----------------------------
-----------------------------------------------------S--------------------------
------------------------S----------------------------------S----S---------------
-----------------------------SS----------------------------S--S-----------------
-----S-------------S-----------S------------------------------------------------
-----------------------------------------S----------------SSSS------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-------------------S---------
---------------------------------------------------------------------S----------
-----------------S-------------------------------------------------S-----S------
--------------S-----------------------------S---------------S-S-----------------
-------------S----------------------S---------S---------------------------------
------------------------------------------------------------------S-------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S--S---------S----------SSSSSSS-------------------------------
---------------------S----------------SS-----S---SSSSS------S------------S------
--------------------S---S-S------S-------S----S-----S---SS----S-----------------
------S---SS-S---SS------------------S-----------------------------S-S----------
S------------S-------S------S------S-----------------------------S-----S------S-
----S---SS-S-S---S--S--S-----------------------S-------------------S------------
---S--S----S----------SS---S------S-S-S--S-----------S--S---------S------------S
-S----S-----------S----------------SS-------------------------------------------
--------S----SS------------SS---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_298
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--------------------------------------GTCTCCGGTAGTGCCTCATG----------------------
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>reverse_1823
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--------------------------------------------------------------CGGCAGAGAAGAAGGCTG
AA------------------------------------------------------------------------------
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>forward_412
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------------------------------------------------------------------------GAGCAATC
ATGGCCAGGGAT--------------------------------------------------------------------
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>reverse_1887
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----------------------------------------------GGAGGAGCAGCTAGCAGTTG--------------
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>forward_476
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--------------------------------------------------------CGAGAACCAGCTGTGTCTGC----
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>reverse_2367
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----------------------------------------------TGCATCTGTCGGCGGATAC---------------
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