>input_sequence_62455
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----------------------------------------CACAAAGAAGAAGCAGCACAAA---GCAATGGAGGCGCAT
ATGCGATCCATGACGGCCACCTTTCTCCTCGTGCTCCTCTCCCTGTCCGCAGCCGCTCCGTCAGTTCGTGGCCAGGCGGT
GGCGGCCGCGCCGGCTCCAGCGGCGGCTGCCCCGAAGACGATCAAGGCGGTGCTGACCAAGGCCGGGCAGTTCACCAAGT
TCCTCCAGCTGCTGCAGTCGACGCAGGAGGAGGAGCAGATCGACACCCAGCTCAAGGGCAAGGCCTCATCCGGCGCCGGT
CTCACCGTCTTCGCGCCGCCGGACAACGCCTTCACCGCGCTCAAGTCCGGCTCCCTCAATTCCCTCTCCGACCAACAAAA
GACGTCGCTGGTGCAGTTCCACGTGGTCTCCCAGCTGCTCCCCATGGCGCAGTTCGACACGGTGAGCAACCCGCTGCGCA
CGCAGGCCGGCGACACCGGCAGGGGCAAGTACCCGCTCAACGTCACGTCCGACGGCGGCGGGAGGGTGAACATCTCCACC
GGCGTCGTCAACGCCTCCGTCGACGGCACGCTCTACACCGGCGACAGGCTGGTGGTGTACCAGGTGGACAAGGTGCTGCT
TCCGTGGGCGCTCTACGGGCCGCCTGT------GCCCGCGCCCGTGCCGTCGCCGGCGGCGGACAAGGAC------AAGA
AGAAGGCCGGGCCGGTGGCGGTGGCCGACGCGCCGGAGGCCGATACAGCCACGCCGTCCTCGGCGGCGCCCCGGGAGATG
CGGGGCCTCGGCGGCGGTCTCTGCATGGTGGCCATCGTCGTGGCGGCCGCGTGGTGTGGCATGTGACGATCG--------
-----------CGGATGTTGCCTTGCATTGGATGTTTTGATTTTTCCCTTTTCTTCCAC--------GAGACGAGAGGTG
CTCGAATCGTTCGGTTTGT-------------------------TTCGGTGTGCTGTTCTTCGTTTTGTTTATGTTTTTT
CAGTATATGATCCTTGTATTTGCTAAAGCTTCGTCACGTTTCGGTCAGTATTTTCCTCCTTTAGCAAA-GTACTTCCTTT
GTAAACTAATATAAAACCGTTTATATC-----------------------------------------------------
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>chr1B_1_TraesCS1B01G129500
GCAAGGTGGTGAACTCATGTGGTGATGGCCATGGCATGTGATCACACGGCCCCAAAGGATGCCCTCACGTGAGAGCCGTG
AGATAATTGCTTGCCTTACAGCTTCGAGGTGCACGGCTGAGTGCGATCTTCCAGCCAACGATGGATCGATCACTGTCCCA
AGATAAGCAGTAGTTATGTCCCCTCAGTGATTCATCTCAATTATACATCCACGAGAAGACGAGATCCCAACTCTTCATTT
TGAATCTTGCACGCTTCTGTTCTTTTTTTTCAGGGTTGAATCTTGCACGCTTATCC-ATGCGTTGATTACATTATACTAC
TCCCTCCGTAAACTAATATAAGAGCG--------------TTTAGATCACTATTTTAGTAATCTAAACGTTCTTATATTA
GTTTACAGAGGGAGT--ACTAACTAAAACTTACTCCGTCTGTTCGCGGTTGCTAAGGAGGTGAAGCCTGTTGGGGGGTAT
GCATGCTTTTCGTCATGTTTCGTATGTCGTTTGTTCGCCTGCATT--CCCGTAGCGT--AAATTGCACAACCCGGTGCCC
G-------------------------------------------------------------------------------
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------------------------------------------------------AAATAGGAAAAGACAGATGGAGCAAA
TGGGATC---TATGACAATCCATCGGACTTTCAAACGCAGCATTAGAGAGCGAGATGAAACGTATCAAACCTTATTTGTT
TATGATAGTATTTTTTGCGGGGTTGTTTATGATAGTATTGATATAGAAATTGCAAATTACACACTTTTAATATCACTATG
TGCAGTTTTAAGTGACCGAGAATTATGAATATTACATCCAAACGAGGATTAGCAGACGGATTAATCAAAACCCCATTCAT
TAATC--AGCACTTAGCTGCCCCATGACGCAATCTAGGCAATCCACCTGTTAATGTTCCATCCATTCCTCGATGGCTCGA
TCTACTTGCATCTCACCTTGCGTACAGCATCTCCATAACTAACCTGCGGATCCCACTTCCATTAATGACATCTCAATTGC
ACCACCATATATAGCGTAGCCAA-GCACACAGTAGCATCACACAAAGAAGAAGCAGCACAAA---GCAATGGAGGCGCAT
ATGCGATCCATGACGGCCACCTTTCTCCTCGTGCTCCTCTCCCTGTCCGCAGCCGCTCCGTCAGTTCGTGGCCAGGCGGT
GGCGGCCGCGCCGGCTCCAGCGGCGGCTGCCCCGAAGACGATCAAGGCGGTGCTGACCAAGGCCGGGCAGTTCACCAAGT
TCCTCCAGCTGCTGCAGTCGACGCAGGAGGAGGAGCAGATCGACACCCAGCTCAAGGGCAAGGCCTCATCCGGCGCCGGT
CTCACCGTCTTCGCGCCGCCGGACAACGCCTTCACCGCGCTCAAGTCCGGCTCCCTCAATTCCCTCTCCGACCAACAAAA
GACGTCGCTGGTGCAGTTCCACGTGGTCTCCCAGCTGCTCCCCATGGCGCAGTTCGACACGGTGAGCAACCCGCTGCGCA
CGCAGGCCGGCGACACCGGCAGGGGCAAGTACCCGCTCAACGTCACGTCCGACGGCGGCGGGAGGGTGAACATCTCCACC
GGCGTCGTCAACGCCTCCGTCGACGGCACGCTCTACACCGGCGACAGGCTGGTGGTGTACCAGGTGGACAAGGTGCTGCT
TCCGTGGGCGCTCTACGGGCCGCCTGT------GCCCGCGCCCGTGCCGTCGCCGGCGGCGGACAAGGAC------AAGA
AGAAGGCCGGGCCGGTGGCGGTGGCCGACGCGCCGGAGGCCGATACAGCCACGCCGTCCTCGGCGGCGCCCCGGGAGATG
CGGGGCCTCGGCGGCGGTCTCTGCATGGTGGCCATCGTCGTGGCGGCCGCGTGGTGTGGCATGTGACGATCG--------
-----------CGGATGTTGCCTTGCATTGGATGTTTTGATTTTTCCCTTTTCTTCCAC--------GAGACGAGAGGTG
CTCGAATCGTTCGGTTTGT-------------------------TTCGGTGTGCTGTTCTTCGTTTTGTTTATGTTTTTT
CAGTATATGATCCTTGTATTTGCTAAAGCTTCGTCACGTTTCGGTCAGTATTTTCCTCCTTTAGCAAA-GTACTTCCTTT
GTAAACTAATATAAAACCGTTTATATCGCAAAGGGAGTAGCAATATTGAGTGCA-GGTGGACGCCACACGGATTTAATTA
AACG----------TTTTTTTAAGAATA--AGGTTCAATTAAACGATGAAACCACCAAATCCACGGTCTCAAACAGTTAC
ATCAACTGTGTTAAAAATATGTATAGA--------------------AAAAACAGTTAAATGCACGGTCTTCAACATTTC
TGAAGGCAGCAGGGGTTCTCAAACTTAGAGTGGAGTATCTGCTCCCGAGCTCAAATACTTTCTTATGAACAGTAAATAAA
AAA----TAATAGTAAAAATTCAAAAAAAAATCTGATTTTTTTGCGGTAAACTTATACAAATGTTTTGTGTGTTGCAAAC
ATTTAGCATGAAAGGACATTCTTGAAATCGTGGGAGAAAAATCAATGCTCCAAACATCATGCATTCAATTAATTTGTGGG
TCCGGCAATATCACGGGCTACAACACCACTTACATATTGGCGAAGATTAGTAAGCCAAATACATTGGCTGTTAATCATAG
CCGTCGAACCATAACCGGCTAGTAGATGAGCAGGAATATTACAAAATGAGACAAACATAAATTTTATAATCTACGAAGTG
CATTTGTAGCTTAAACTTAGCTTCTTGAAAGAGGATGCCAAGAGGACCACGGTCCCATGTTACCGATCCCAACGCAAGCT
TCAGCCAGAGGCAGTCCGTGATGAAAATAACTCGGCCCATACCAAACTCTTCAACAAGCCTGATAACATTTATCATGGCC
AAAGATTTTGCATGAAGGGCATCCGTGAGACATGCAAGTCTACCAGCAGCTGTAAAAACGACTTCGTCTCCCTTGTCTCT
AGCAATACACCCCCATCCACCATCTCCACTGCACAAGAAAGCAGCGTCAACGCAAATCTGCACCCATTCTGTAGGTGGGG
GTTTCCACTTTGGTTTGACAGAGCATTTTAGAGTGCTGATTTTGTTTTTTTGCCACGACTTCCACAAATGCCATTTCGTA
TGAAATTTGTCAAGCAAATAAAAC
>chr1A_1
GCAAGGTGGTGAACTCATGTGGTGGTGGCCATGGCATGTGATCAGACGG-CCCAAAGGATGTCCTCACGTGAGAGCCGTG
AGATAATGGCTCGCCTTACAGCTTCG---------GCTGAGTGCGATCTTCCAGCCAACGATGGATCGATCGCTGCCCC-
--ATAAGCAGTCGTTATGTCCCCTCGGGGATTCATCTCAATAATATATCT-CGAGAAGACGAGATCCCAACCCTTCATTT
TGAATATTGCACATTTCTGT--TTTTTTTTCAGGATTGAATCCTGCACGCTTTTCCTATGGGTTAATTACATTATACT--
-CCCTCTGTTCCAAAATAAGTGTCTCAACTTTGTATTAACTTTAGTACAAAATTACATTAAGCTTGATGCACTCATTTTA
GGATGGAAGGAGTATTAACTACTTAAAACTTACTCTGTCTGTTCGCGGTTGCTAAGGAGGTGAAGCCTGTTCGAGGGTAT
GCATGCTTTCTGTCATGTTTCGTATGTTGTTTGTTCGTCTGCATTTACCCGTAGCGT--AAATT----------------
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>chr1D_4
---AGGTGGTGAACTCATGTGGTGATGGCCATGGCATGTGATCAGACGGCCCCAAAGGATGTCCTCACGTGAGAGACGTG
AGATAATTGCTCGCCTTACAGCTTCGAGGTGCACGGCTGAGTGCGATCTTCCAGCCAACGATGGATCGATCGCTGTCCCA
AGATAAGCAGTCGTTATGCCCCCTCAGGGATTCATCTCAATTATATATCGACGAGAAGATGAGATCCCAACCCTTCATTT
TGAATCTTGCACACTTCTGT--TTTTTTTTCAGGGTTGAATCTTGCACGCTTTTCC-ATGCGTTGATTACATTATACTAC
TCCCTCCGTCCCAAAATAAGTGTCTCAACTTTGTACTAACTCTAATATAAAATTGTACTAGGCTTGAGACACTTATTTTA
AAACG--GAGGGAGT--ACTAACTAAAACTTACTCCGTCTGTTCGCGGTTGCTAAGGAGGCGAAGCCTGTTCGAGGGTAT
GCATGCTTTCCGTCATGTTTCGTATGTCGTTTGTTCGCTTGCATTTATCTGTAGTGTCGAAATTGCACTAGCCCGTACCC
GCGTCTAGGAAAACGGCCAAATTTAAGCATTCCTGGCGGCCTGACTAAGGAGTGCTTTGAGTTTCACGCGGATTAGTTTT
TTCGTGAGTGTCACACAGCCAAACAACTCAGATTTAGCACATTACAATTTGGTTGGGCTTGATGCAATCTACCAAACACG
TAGATGTGTTATATACTATGAAAATTAAGCACAAAAGTATGTAAAGAAACACTAAAATAGGAAAAGACGGACGGAGCAAA
TGGGATTAATTAAGAGAATCCACCGCACTTTCAAACGCAGCATTAGAGAGGGAGATGAAACACATCAAACCTGACTTGTT
TCC---------------------------GATAGTATTGATTTAGAAATTGCAAATTACACACTTTCAGTATTACTATG
TGCAGTTTTAAGTGACTGAGAATTATGAATATTGCATCCAAACGAAGATTAGCAGACGGATTAATCAAAACCCCATTCAT
TAATC--AGCACTTAGCTGCCCCAAGAAGCAACCTAGGCAATCCACCTGTTAATGTTCCATCCATTCCTCGATGGCCCGA
TCTACTTCCATCTCACCTTACGTACAGCATCGCCATGATTAACCTGCGGATCCCACTTCCATTAATGACATCTCAATTGC
ACCACCATATATAGCGTAGCC-AAGCACGCAGTAGCATCACACAAAGAACAAGCAGCACAAA---GCAATGGAGGCGCAT
ATGCGATCCATGACGGCCACCTTTCTCCTCGTGCTCCTCTCCCTGTCCGCAGCCGCTCCGTCGGCTCGTGGCCAGGCGGT
GGCGGCCGCGCCGGCTCCAGCGGCGGCTGCCCCGAAGACGATCAAGGCGGTGCTGACCAAGGCCGGGCAGTTCACCAAGT
TCCTCCAGCTGCTGCAGTCCACCCAGGAGGAGGAGCAGATCGACACCCAGCTCAAGGGCAAGGCCTCATCCGGCGGCGGT
CTCACTGTCTTCGCGCCGCCGGACAACGCCTTCACTGCGCTCAAGTCCGGCACCCTCAACTCCCTCTCCGACCAACAGAA
GACGTCGCTGGTGCAGTTCCACGTGGTCTCCCAGCTGCTCCCCATGGCGCAGTTCGACACGGTGAGCAACCCGCTGCGCA
CGCAGGCCGGCGACACCGGCAGGGGGAAGTACCCGCTCAACGTCACGTCGGACGGCGGCGGGAGGGTGAACATCTCCACC
GGCGTCGTCAACGCCTCCGTCGACGGCACGCTCTACACCGGCGACAGGCTGGTGGTGTACCAGGTGGACAAGGTGCTGCT
GCCGTGGGCGCTCTACGGGCCGCCCGTGCCCGCGCCCGCGCCCGCGCCGTCGCCGGCGGCGGACAAGGAC------AAGA
AGAAGGCCGGGCCGGTGGCGGTGGCCGACGCGCCGGTGGCCGATACAGCCACGGCGTCCGCGGCGGCGCCCCGGGAGATG
CGGGGCCTCGGCGGCCGTCTCTGCATGGTGGCCATCGCCGTTGCGGCCGCGTGGTGTGGCATGTGACGATCGAGGAAGAG
TGGCGGACAGTCGGATGTTGCCATGCGTTGGATGTTTTGATTTTCCCTTTTCTTCGTCGAGACTCGAGAGACGAGAGGTG
CTCGAATCGTTCGGTAACCGATATTTTTTATGTTTATGTTTTTCTTCGGTGTGTTGTTCTTCGTTTTGTTTATGTTTTTT
CAGT--ATGATCCTTGTATTTGCTGAAGCATCGTAACGTTTCGGTCAGTATTTTCCTCTTGTAGCAAA-GTA--------
---------------------------------------GCAATATTGAGTGTACGCTGGGCGCCACCCGGGGTTCAATT
AAACGTTTTTCTTCTTTTTTTGAGAATC--GGGTTCAATTAAACGATGAAACCACCCAATCCACGGTCTCAAACAGTTAC
ATCAACCGTGTTAAAAAAAGTTACATCAACCACCTCTTGATATAGAGAAAAACAGTTAAATCCACGGTCTTCAACATTAC
TTAAGGCAGCAGGGGTTCTCAAACTTAGAGCGGAGTATTTGCTCGCGAGCTCAAATACTTTCTTATGAACAGTAAATAAA
AATGTAGTAATAGTAAAAAATTCAAAAAAATTCTGATTCTTTTGCGGTAAACTTCTACAATTTTTTT-------------
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>chr1A_666
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---------------------------------------------------------------------------TTGTT
TCC---------------------------GATTGTATTGATTTAGAAATTGCAAATTACACACTTTCAATATTACTATG
TGCAGTTTTAAGTGACCGAGAATTATGAATATTACATGCAAACGAAGATTAGCAGACGGATTAATCAAAACCCCATTAAT
TAATTTTAGCACTTAGCTGCTTCATGAAGCAACCTAGGCAATCCACCTGTTAATGTTCCATCCATTCCTCGATGGCTCGA
TCTACTTCCATCTCACCTTACACGCAACATCTCCATGATTAACCTGCGGATCCCACTTCCATTAATGACATCTCAATTGC
ACCACCATATATAGCATAGCCAAAGCACGCAGTAGCATCACACAAAGAACAAGCAGCACAAAGCAGCAATGGAGGCGCAT
ATGCGATTCATGACGGCCACCTTTCTCCTCGTGCTCCTCTCTCTGTCCGCAGCCGCTCCGTCAGTTCGTGGCCAGGCGGT
GGCGGCCGCGCCGGCTCCAGCGGCGGCTGCCCCGAAGACGATCAAGGCGGTGCTGACCAAGGCCGGGCAGTTCACCAAGT
TCCTCCAGCTGCTGCAGTCGACGCAGGAGGAGGAACAGATCGACACCCAGCTCAAGGGCAAGGCCTCCACCGGCGCCGGC
CTCACCGTCTTCGCGCCGCCCGACAACGCCTTCACCGCGCTCAAGTCCGGCACCCTCAACTCCCTCTCCGATCAACAGAA
GACGTCGCTGGTGCAGTTCCACGTGGTCTCCCAGCTGCTCCCCATGGCGCAGTTCGACACGGTGAGCAACCCGCTGCGCA
CGCAGGCCGGCGACACCGGCAGGGGCAAGTACCCGCTCAACGTCACGTCCGACGGCGGCGGGAGGGTGAACATCTCCACC
GGCGTCGTCAACGCCTCCGTCGACGGCACGCTCTACACTGGCGACAGGCTGGTGGTGTACCAGGTGGACAAGGTGCTGCT
GCCGTGGGCGCTCTACGGGCCGCCCGT------GCCCGCGCCCGTGCCGTCGCCGGCGGCGGACAAGGACAAGGACAAGA
AGAAGGCCGGGCCGGTGGCGGTGGCCGACGCGCCGGAGGCCGATACAGCCACGGCGTCCGCGGCGGCGCCCCGGGAGATG
CGGGGCCTCGGCGGCGGTCTCTGCATGGTGGCCGTCGCCGTGGCGGCCGCGTGGTGTGGCATGTGACGATCGAGGAAGAG
TGGCGGACAGTCGGATGTTGCCATGCATTGGATGTTTTGATTTTCCCTTTTCTTCGTCGAGACTCGAGAGACGAGAGGTG
CTCGAATCGTTCGGTTTGT-------------------------TTCGGTGTGTTGTTCTTCGTTTTGTTTATGTTTTTT
C-GT--ATGATCCTTGTAATTGCTGAAGCTTCGTAACGTTTCGGTCGGTATTTTCCTCTTGTAGCAAAAGTA--------
---------------------------------------GCAATATTGAGTGCACGCTGGGCGCCACCTGGGTTCAATTG
AACG----------TTTTTTTTTGTGAATCAGGTTCAATTAAACGATGAAACCACCAAATCCACGGTCTCA-ACAGTTGC
ATCAACTGTGT---------------------------------------------------------------------
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>SNPs
--------------------------------------------S----------------S------------------
-----------S-----------------------------------------------------------S--------
-----------S---------------S-----------------S---S---------------------S--------
------------S-------SS------------------------------S---------------------------
---------SSSSS----SSS-SSSS-------------------SS--SS---S--S---S--SS-S-SS-----S---
-SS-SS-----------------------------------------------------------------S-S------
---------S----------------------------------------------------------S-S--S--S---
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--------------------------------------------------------------------S--S--------
------S-----S--S------S--S------------------------S----------SS---------S-S-----
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S------------------------S-----S------
---------------------------------------------S----------------------------------
---------------------------S----S-----------------------------------------------
-------S-----------S----------------S-S-----------------------------------------
----------------------------S--------------------S------------------------------
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---------------------------------------------------S-------S-----------------S--
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S-----------------------S-------------------------------------------------------
-----------------------------------------------------S-----S--------------------
-------------------------------------S------------------------------------------
----------------------S---------------------S--S---SS-SSSSS---------------------
-----------------------------------------------------S--------------------------
----SS------------------S---------S-----------------------S-S-----------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S---S------S---S-------S
---------------------S----------------------------------------------------------
-----------------S-SS--S-SS----------------------------------S----------------S-
-S----------------------------S-------S-----S-----------------------------------
--S----------------S-SS-------S-------S---------------S-----S-S----SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_554
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------------------------------------------------------AGCGTAAATTGCACAACCCG------
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>reverse_2132
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---------------------------------------------------TCTTCCACGAGACGAGAGGT---------
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>forward_1580
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----------------------------------------TCAAGTCCGGCTCCCTCAAT--------------------
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>reverse_3231
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------------------------------GCACAAGAAAGCAGCGTCAA------------------------------
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