>input_sequence_62438
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----------------------AACTTGTCGTCACCATGGAGTATCATTCTCCAACGTCCCTCTCATAGTTCCACAAACA
ACTCGCCTCGATTTTAACCCTTCGTTCCAGCAACTTACATTTGATCAATCCC-----TCTTCACAGACCTTGCACATTCA
TGGAGCAAAACAGCACGCTTCTTCGGCGCGTGCTGCAGAAGGCAGCACGAGCAGCAAGAACCATCGCTTACCTCCGCCCA
TCTCCTCCTCCGACACCGTCAACACCCTGCCGCCGTCTCCCGCCCAGCCTGCTGGACTGCACTG---ACGACGACGACGG
CGGGTCTCCGAGCTTCCACACGGCGGCAAGCACGCCAGCGGAGACGCCGCCGTCCGTCCACTCGAGGATAGACAGCCCTG
GCGCCGCCGACATCGACAGCCGCGCCGCGGAGTTCATCGAGAGGTTCCGGCGCAACGCGTCCCTCGAGCTGCGGTACTGC
TCCCCGGTGACCCCCGCCAGGCCGCCCGCGTCGCCGGACACCTACTTCAACCTCTCGAGGCTGCACGGCCCGGCGCTGGC
ACATGCGCGGCCGGTGTGCAGGAGGAGCTCGCCGGGGGCGAGGGCGAGCGCGAGCGCTACGTCCATCAATTGGCCGAGTA
CCACGTGCCTCGGAAGAAGGCCTACTGTTCAGGTGTAGCAGTAGCGGTGAACCGGTGGTGCTCCGCATGCAAACCGGAAG
AGTCGCGTTCGATCGGCGTA---------GTCAGCCCTGGCCAAAAACCGGGTAAGACAAAGCTCGATCGCCAATTAGGA
AGTCATTCAGTACCATGGCATTGACATTCAGTCGGGAGCAAGGGGATGGCATATGCCTCTGCTCTGAAGGACCCTCGATC
GCAACCGAGATGGTTTTGTTTTCGCGACCTTTTGCTCTCTTTGTTAATAATATTGTGACTATTTTCTTTCGATCTGTATG
AATAGCAGGCGGTCTCTCTTTTCCCTTACAAAAATGATTCAGTTGTATTCATTCCGTCCCATGATAAAAGATGTTATTAC
ATGGAAGCGGATTCACTCGGGTGCTCCCCCCTATATTAAA----------------------------------------
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>chr7B_1_TraesCS7B01G267400
GCACGTAGGTCCGAAGATGAGTTAGAGTTAGGAAAATAATTTTCTTTTT---GAAAAGGAAATATATTAATATTACGAAG
A--ACCAATTAC-CTCAGTCTCTGCACCAATAAGATGTCTCAAAGACATCCAGGATGTACATAGCTTGAAA-AGAAAAGA
AAAAGCAAAAGA------AAAC--AAACGCCTCACCATAGTG-TCAACTCCTCTCACCAGTAGCA-CACAAACCACCACT
AAAG-ACAACACTTTAAAAACATGAA-AGGTCTCCAAAAACGACGCCTTCAAGATGAAAACAA--TGCACAAGCGTCGTC
GTCGCCCGATCCAAAATCTTAGGTTTTCGTTCTGGAGAAAGTCCGAACTCTAAAAACAATTACCTTCAGCAAGATAA-TG
GCAGACATAATCAATGAAGTTCAAACCTTAGGTTTTCACCCTGAAAGTCGTGACTCGGCACCCGGGGAGAACCACCAAAA
ATGAAATCCTTCAGTG----TTGCCGCCCCCACTTGTCACTGCTGCTTTTGAAAGTTATTAAACACCTGGCTGACTCTGT
CGCCCATTGGCTCCAAGGCCCCCTCCA-----------------------GCTTACTAATCCTCCGATCTCAGC----CA
CCATGACCTTCCCCACCGCTATCTACGCCATGAAAATCAGGATAAC----GAC-ATGTCCCATAGTGTCAACAAACAACA
GAGCTTCGTGTCGCGCCCTCATGGAGCCGCGTAGTCTGATATGGACGCGCACAACCGGATTATATACGATCCAAATATCC
TTGGGCACGATCTCCCGCAACAGTTTCGGAATACATCGATGGCCAGATCGAGGAGGATCAATTATGGTTGAATTTTTTTA
TTAACTGCAATTATACGATTACCCGCAAAAAAAAACTGCAATTATACGAGAACGACCTTTACTAAAAATAGAAGAACCAT
AAAGTTGACCATGCACTATTCTACCACGCCCTTGGAGACGCG-CCAACCAAACCCATCCACCTGTGTATTA---AAGTAA
AGGGTTAAAATCTTAATCAATCAACTTGTCGTCACCATGGAGTATCATTCTCCAACGTCCCTCTCATAGTTCCACAAACA
ACTCGCCTCGATTTTAACCCTTCGTTCCAGCAACTTACATTTGATCAATCCC-----TCTTCACAGACCTTGCACATTCA
TGGAGCAAAACAGCACGCTTCTTCGGCGCGTGCTGCAGAAGGCAGCACGAGCAGCAAGAACCATCGCTTACCTCCGCCCA
TCTCCTCCTCCGACACCGTCAACACCCTGCCGCCGTCTCCCGCCCAGCCTGCTGGACTGCACTG---ACGACGACGACGG
CGGGTCTCCGAGCTTCCACACGGCGGCAAGCACGCCAGCGGAGACGCCGCCGTCCGTCCACTCGAGGATAGACAGCCCTG
GCGCCGCCGACATCGACAGCCGCGCCGCGGAGTTCATCGAGAGGTTCCGGCGCAACGCGTCCCTCGAGCTGCGGTACTGC
TCCCCGGTGACCCCCGCCAGGCCGCCCGCGTCGCCGGACACCTACTTCAACCTCTCGAGGCTGCACGGCCCGGCGCTGGC
ACATGCGCGGCCGGTGTGCAGGAGGAGCTCGCCGGGGGCGAGGGCGAGCGCGAGCGCTACGTCCATCAATTGGCCGAGTA
CCACGTGCCTCGGAAGAAGGCCTACTGTTCAGGTGTAGCAGTAGCGGTGAACCGGTGGTGCTCCGCATGCAAACCGGAAG
AGTCGCGTTCGATCGGCGTA---------GTCAGCCCTGGCCAAAAACCGGGTAAGACAAAGCTCGATCGCCAATTAGGA
AGTCATTCAGTACCATGGCATTGACATTCAGTCGGGAGCAAGGGGATGGCATATGCCTCTGCTCTGAAGGACCCTCGATC
GCAACCGAGATGGTTTTGTTTTCGCGACCTTTTGCTCTCTTTGTTAATAATATTGTGACTATTTTCTTTCGATCTGTATG
AATAGCAGGCGGTCTCTCTTTTCCCTTACAAAAATGATTCAGTTGTATTCATTCCGTCCCATGATAAAAGATGTTATTAC
ATGGAAGCGGATTCACTCGGGTGCTCCCCCCTATATTAAAAAATAATTTAGTAATTTAAAAAAGCTCAAAAAGTTATGGA
ACTTTTCTGAATTCAAATTTGACCAGGTATTATACTCGTACAAAAAGTTTGGCCAAGGAATGATTCCCATTGACTTCGGG
GCGAAGAGAACAAAATTATGACAACAATGTAGCATGAATAGTATTTGTATCAGACGTTCTTTTGCAAATCTTTGACCCCG
GATACAATGAAAGGCATTCCCTGTTAATCATTTTATACGAGTGCAATACTTGGTCATGTTTGATTCCATAAAAAGCTCTA
GGTTTTTTTTTTTGAAGTATTAAATTATTTTTGTATATAGAGGTGTGTAGCACCCGAGTGCTCCTATGAATTTTCGGTTA
TTACATCCAATATACTCTTACATTGAATGCAATAACATCTTACATTATGGGAAGAAAGGAGTATTGGATTAGTATACAAT
AACCAATATAACAAACAATGCACGTGATCATTGTGGAGAAGAAGTTCGATCAAGCACCCAACACTGTGCTTGCATAACTA
TAGAGAGATGGAACCACCATTGCAAGATATAATTTTTCTCTCTCTTCTAACTGGAGGAGTCCGGTCACCAATTCCAATTT
ATAAAGTAAGAGATATTCTTTATTGTTAATAAAGTTCGGGGAAAGACATTTTTTTCATGTCGGGTAGACGGTAATACTCC
ATCCAAAACAAATTAGTTATATTTTTAGCCTTTTCCTATTCAAACTTCTTTTAGTTTGAAAATCGGTCCCTTGGGTGACG
GTTACTTAATTTGCGGAGGGGTGATTTCAGGGTGGTCCGGCAAGAAGCATGTGAATCACATTTTGCTATGTTTTCTTGAC
CCTGAACTCTTCCCAAGGCACTCCAACGATTGCAATCACCGTGATTCCATCTAGGACCATGCCCCGACCCAACCTCAGTT
CCGTTTTCATTTCTCGGTTCCATATCTCAAAACTAAGTCATCCCTAAACCATTACTCCCAACACCAAAAGCCTCTCATGT
>chr5D_38
AATTTTT--------------------------------------TTTTCCGAAAAGGGGAATATATTAATATCAAGAAG
A-TACCAATTACACAAAGCCTCTGAACCAACAAGACGTCACAAGGACATCCAGGATGCACACAGCCCGAAA-ACAATAAA
AAAGAAAGTAAAAGAAAATCCA--A-AGGCCTCGCCACAGTGATCGACTCCTCTCATTAGCAGCA-CACAAACCACATAC
GAAG-GCAACACCCAGAAAACATAGA-AGGTCTCCAAAAGCGACGCCTTCAAGAAGGAAACAG--TGCACTAGCACCGTC
AACGCCCGATCCAAGATCTTAGGTTTTCACCCTGAAGAAAGTCCGAACTCACAAAACAATA-CCTTCAATAAGGCAATTG
CCAGGCACAACCAATGAAGGCCAAACCTTAGGTTTTCACCCTGAAAGTCCCGACTCGGCACCCGAGGAGCACCACCGATA
ATGAAATCCTCCAGTG----CTGCCGCCCCA-CTTATCACTACTGTTTCTGAAAATTATCAAACACCTGGCTGACTCCAT
CGCC-------TCCAAGGCCCCCTCCA-----------------------CCTTATTGATCCTCCGATCTTAGC----CA
TCATGACTTTCTCCACTGTTGTCTACGCCACGGAAATCGAGATGCC----AAC-ATGTCCCATGGTTCCAACAAACAATG
AAGCTCCGCGTTGCGTCCTCATGGAGCCACGTAGGCCGATATAGACGCGCAAGACCGGAAACTGTCCGTTCCAGATATCC
TTGGGCAAGATCTCTGGCAGCAGATCCGAAACACGTCGACGGCTAGATCAGGTAGGA-----------------------
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>chr2B_39
ATTTT---------------------------------------TTGTT---AAAAAGGAAATATATTAATATCGTGAAA
AATACAAATTGCACGCAGCCTCTTTACCAACAAGATGTCTCAAAGACATCCAGGATGCACACAGTCCGAAA-AGAAAATA
AAAAGAAAG----AAAAAAACA--A-AGGCCTCGCCACAGTGATCATCTCCTCTCAGCACCAGCA-CTCAAATCACCACC
AAAG-ACAACACCAGGAAACCATAAA-AGGTCTTCAAAATCGACGCCTTCAGGAAGGAAATAG--TGCACAAGTGCCATC
GTCACCCAATCCAAGATCTTAGATTTTCACCGTGGAGAAAGTTCGAGCTCTCAAAACTATA-TCTTCAACAAGGCAATTG
TCGGGCACAACCAATGAATGTCACACCTTAGGGTTTCACCCTGAAAGTCACGAGTTGGCACCCGAGGAGCGCAACGAAAG
ATAAAATCCTCCAGTG----TTGTTGCCCCCAATTGTCACTGCTGCTTCAGAAAGTTATCAAACACCTGACTAACTCCAT
CGCC-------TCTAAGGCCCCCTCCG-----------------------CCTTAC--ATCCTTCGGTCTCAGC----CA
CCATAAATTTCTCCACAGTTGTCTACTCCATGGAAATCGAGATACCGAT-----ATGTCCCATGGTGTCAACAAACAATA
GAGCTTCGCGCCACGCCCTCATGGAGCCGCGAAGGTTGATATGGACGCGCACAACCGGATTATATCCGATCCAGATATCC
TTGGGCAATATCTCCGATAGCAGTTCCGGAACACGTCGATGACAAAATCGAGGAGGACCGATCATG--------------
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>chr5B_40
TTTTCTTCTAAA-----------------------------------------------AAAGGAATATATATTGCAAAG
A-TATCAATTACACCCAGCGTCTATACCAACAAGA-GTTTCAAAGATATCCAGGATGCACACAACCCGAAA-AGAAAAGA
AAAAAAGGG----AAAAAAACA--A-AGGCCTCGTGACAGTGATTAACTCCTCTTAGTAGCAGCA-CACAAACCACCACC
AAAGTACAACACCCTGAAAACATAAA-AAGTCTCCAAAAGCGACGCCTTCAAGAAGAAAATAG--TGCACAAGCGTCGTC
GTCGCCCGATCCAAAATCTTAGGTTTTTACACTGAAGAAAGTCTGAGCTCTCAAAACAATA-CCTTCACCAAGGCAATTT
CCAGGCACAACCAATGAAGGCCAGACCTTAGATTTTCATTCTAAAAGTCACGACTCGGCACCCGAGGAGCATCACCAAAA
ATGCAATCCTCCAGTG----ATGCTGCCCCCACTTGTCGCTGCTACTCCTGGAAGTTATTGAACACATGGCTGACTCAAT
CGTC-------TCCAAGCCCCCCCCCCA----------------------CCTAGTTGATCCCCCGATCTCAGT----CA
CCATGACTTTCTCCACAACTGTCTACGCCATGGAAATCGAGATACCGACAGAC-ATGTCCCAAGGTGTCAACAAACAACA
AAGCTTTGCGACGTGCCCTCATGTAGATGTGTAGGCTGATACGGACGCACACGACCAGATTCCATCTGGTCCAGATATCT
TTGGACAAGATCTCCGACACTAGTTAAGGAACACGTCGACGACCAGAT--------------------------------
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>chr2D_40
--TTTTT--------------------------------------TTTG---GAAAAGAGAATATATTAATATCGTGCAG
A-TACCAATTACACCCAGCCTCTGCACCTACAAGATGTCGCAATGACATCCAGGATGCACACAACCA-AAG-AAAAAATA
GAAAAGAAAGGA------AAAAATAAAGGTCCCGTCACAACGATCGACTTCTCTCAGTAGCCACA-CACAAACCACCATC
AAAT-ACAACACCC-GAAAACATAAA-CGGTCTCCAAAAGCAACGCCTCCAAGAATAAAACAG--TGCACAAGCACCATC
ATTTCCCGATTCAAGATCTTAGGTTTTTACCCTGGAGAAG-TCCGAGCTC--------------------------ATTG
CCAGTCACAATCAATGAAGGCCAGACCTTAGGTTTTCACCCTGAAAGTCACGCCTCGGCAACCGAGGAGCACCACCAAAA
ATGAATTCCTCCAGTG----TTGTCGCCCCCACTTGATAGTGGGGCTCCTAAGAGTTAGGAAACACCTGGCTGACTCCAT
CACC-------TCGAAGGCTTCGTCCG-----------------------TCTAAGTAATCCTCCGATCTCAGC----CA
CCATGACCTTCTCCACAGTTGTCTACACCATAGAAATCAAGAAGCC----GAC-ATGTCCCATGGTGTCAGCAAACAATA
GAGCTTCGCGCCACGTCGTCATGGAATCTCGTAGGCTAATATGG-CGTGCATGACCGAATTCTATCCGATCCAGATATC-
TTGGGCAGGATCTCCGGCAGCAGTTCTAGAACACGTCGATGACCAAATCGAGGGGGACCAATCATG--------------
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>chr2D_42
TTCATTTC--------------------------------------TTT---AAAAGGGGAATATATTAATATCGTGAAT
A-TATCAATTACACCCAGCCTCTGCACCAAAAAGAAGTCACAAAGACATACATGATGCACATAGCTCGAAA-AGAAACCA
AAAAAGAAAGGG------AAAA--AATGGCCTCGCCACAATGAACAACTCCTCTCAGCAGCAGCATCACAAACCTCCACC
AAAG-ACAACACCT-GAAAACATAAA-ATGTCTTCAAAAGCGACACCTTCAAGAAGGAAATAG--TGCAGG-----CGGC
GTCGCCCGATCTAAGATCATAGGTTTTCACCCTGGAGAAAAACCGAGCTATCAAAACAATA-CCTTCAACAAGGCAATTG
TTCGGCACAACCAATGAAGGCCAAACCTTAGGTTTTCACCCTGAAAGTCACGACTCGGCACTCGAGGAGCACCACCAAAA
ATGAAATGGTCCTGTG----CTGCCGCCCCCACTTGACACTGCTGCTACTGAAAGTTATCAAACACCTGG----------
------------CGATGGCCCCCTCCG-----------------------CCTTACTGATCCTCCGATCTTAGC----CA
TCAAGACTTCCTCCGACGTTGTCTGTGCCATGGAAATCGAGATGCC----GAC-ATGTCTCATGGTGTCAACAAACAACA
GAGCTTCGCGTCGCGCTCTCCTGGAGCCATGCAGGCTGATATGGACGTGCACAACCAAATATTATCCGATCCAGATATCC
TTGGGCAAGATCTCCGACAGTAGTTCCAGAACACGTCGACGACCAGATTGAGGAGGA-----------------------
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>chr1A_44
CTTTTT------------------------------------------T---AAAAGGGAAATGTATTAATATTGCGAAG
A-TATCAATTACATCCAGCCCCTGCGCCAACAAGAAGTCACAAAGATATCCAGGATACACACAGCCCGAAA-AGAAAACA
AAAAAGAAAGGG------AAAA--A-TGGTCTTGCCAGAGTGATCAACTCCTCTCAGCAGCAGCA-CACAAACCACCACC
AAAG-ACAGCACCCGAAAAACATAAA-AAGTTTCCAAAAGAGACACCTTCAAGAAGGAAACGG--TATACAAGCGCCGTC
ATCGCCCGATCCAAGATCATAGGTTTTCACCCTGAAGAAAGATTGAGCTCGTAAAACAGTA-CCTTCAAGAAAGCAATTG
TCAGGCACAACAAATGAAGGCCAGACCTTAGGTTTTCATCCTGAAAGTTATGACTCGACACCTGAGGAGCACCACTAAAA
ATGAAATCCTACTGTG----CTGCCGCCCCCACTTGACACTGCTTCTACTGAAAGTTATCAAACACCTGGTTGACTCCAT
CGCC-------TTCAAGGCCCCCTCCA-----------------------CGTTACTGATCCTCTGATCTTAGCTAGCCA
TCAAGACTTTCTCCGCCACTTTCTGTGTCGTGGAAATCGAGATGCC----GAC-ATGTCCCATAATGTCAACAAACAACA
GAGCTTCGTGTCGCACCCTCCTAAAGCCACGCAGTCTGATATGGACGCGCACGACCGGATACTACCGGATCCAGATATCC
TTGGGCAAGATCTTCGGCAATATTTTCG----------------------------------------------------
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>chr1D_45
--------------------------------------------TTTTT---AAAAGGGGAATATATTAATATCGTGAAA
A-TATCAATTACATCGAGCCCCTGCACCAACAAGAAGTCACAAAGACACCCAAGATACACACAGCCCGAAA-AGAAAACA
AAAAAGAAAGGG------AAAA--A-TGGCCTTGCCAGAGTGATCAACTCCTCTCAGCAGCAGCA-CACAAACCACCACC
AAAG-ACAGCATCCAAAAAACATAAA-AGGTCTCCAAAAGCGACGCCTTTAAGAAGAAAACAG--TGCAGAAGCGTCGTC
ATCGCCCTATCCAGGATCATGGGTTTTCACCCTAGAGAAAGATCAAGCGCTCAAAACAATA-CCTTCAACAAGGCAATTG
TCACGCACAACAAATGAAGGCCTGACCTTAGGTTTTCACCCTGAAAATTATGACTCGGCACCCGAGGAGCACCACCAAAA
ATGAAATCCTACTGTG----TTGCCGCCCCAAGTTGACACTGCTACTACTAAAAGTTAC-GAACACCTGGCTGACTCCAT
CGCC-------TTCAAGGCCCCCTTCG-----------------------CCTTACTGATCCTCTGATCTTAGC----CA
TCAAGACTTTCTCCGCCACTGTCTGTGCCATGAAAATCGAGATGCC----GAC-ATGTCCCATGGTGTCAACAAACAACA
GAGCTTCGTGTCGCGCCCTCCTGGAGCCACGCAGCCTGATATGGACGCGCATGACCGGATACTATCGGATCCAGATAACC
TTGGGCAAGGTCTCC-----------------------------------------------------------------
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>chr5B_45
--------------------------------------------TTTTT---TAAAGGGGAATATATTAATATCAGGAAG
A-TAGCAGTTACACCCAGCCTCTGCACTCACAAGATGTCGCAAAAACATCCAGGATGCACACAGACA-AAG-AAAAAATA
-AAAAGAAAGGA------AAATATAAAGGCCCCGTCCTAGTGATCGACTCCTCTCAGCAGCCGCA-CACAAACCACCGTC
AAGT-ACAACACCCAGAAAACATAAA-AGGTCTCCAAAAGAAACGTCTCCAAGAAGGAAACACTTTGCACAAGCGCCGTC
GTTG-CCGATCCAAGATCTTAGG-TTTCACCATGGAG-AAGTCCGAGCTCTCAAAACAATA-CCTTCAGCAAGGCAATTG
CCAGGCACAACCAGTGAAGGCTATACCTTAGGTTTTCACCCTGAAAGTCCTGGCTCGGCACCTGAGGAGCACCACCAAAA
ATGAATTCCTCCAGTG----CTGCCACCCCCACTTGACACTGCTGCTCCCGAGACTTATCAAACACCTGACTGACTCCAT
CGCC-------TCGAAGGCCCCGTTCG-----------------------GCTAACTAATCCTCCGATCTCAGC----CA
CCATGACCTTCTCCATAGCTGTTAACATTATAGAAATCGAGAAGCC----GAC-ATGTCCCATGGTGACAACAAACAACA
GAACTTCGTGCCACGCCCTCATGGAACCTCATAGGCTGTAACGGACGTGCACGACCGAAATCTATCTGATCCAGATATCC
T-GGGCATGATCTCCAGCCGCAATTCCGGAACATGTCGATGACAAGATCGAGGAGGA-----------------------
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>chr1B_45
TTTTTT----------------------------------------------AAAAGGAAAATATTTTAATATCATGAAG
A-TATCAATTACACCCGGCCTCCGCACCAACAAGAAGTCACAAAAACATCCAGGATGCACACAACCCGGAA-AGAAAACA
AAAAAAAGTG--------------AATAGCTTCATCACATTGATCAACTCCTCTCAGCAGTAGCA-CACAAACCACCACC
AAAG-CCAACACCAGGAAAACATAAA-AGGTCTCCAAAAACGACGCCTTCAAGAAGAAAACAG--TGCACATGCGCCATC
GTTGGCTGATCCAAGATCATAGGTTTCCACCCCGGAGAAAGACCGAGCTCTCAAAACAATA-CCTTCACTAAGGCAATTG
TCAGACACAGCCAATGAAGGCAAGACCTTAGATTTTAACCCTGAAAGACACGACTCGGCACCAGAGGAGCACCACAAAAA
GTGCAATCCTCCTGTGCTGCATGCCGCCCCCACTTGACACTGCTGCTACTGAAAGCTATCAAACACCTGGCTTACTCCAT
CACC-------TTGAAGGCCCCCTCCA-----------------------CCTTACTGATCCTCCTATCTTAGC----CA
TCAAGACTTTCTCCGGCGCTGTCTATGCCATGGAAATCGAGATGCT----GACAATGTCCCATGGTATCGACAAACGACA
GAGCTTCGCGGCGCGCCCTCCTGGAGCCACACAGGTTGATATACACGCCCATGACCGGATAC-------------TATCC
TTGGGCAAGATCTCCTGCAGTAGTTCCGGAACACGTTGATGGCCAAAACGAGGAGGAT----------------------
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>chr7B_92
--------------------------------------------------------------------------------
-----------------GTCTCTGCACCTACAAGATGTTGCAAATACATCTGGGATACACATAACCAAAGA-AAAAATTA
-AAAAGAAAGGA------GAAAACAAAGATCCCGTCACAATGATTGACTTCTCTCAGCAGCCACA-CAAAAACCAGCACC
AAAT-ACAACACCTGGAAAACATAAA-AAGTCTCCAAAAGCAAAACCTCCAAGAAGGAAATAG--TGCACAAGCGCTGTC
ATTGCCCGATCCGAGATCTTGCGTTTTCACCCTGGAG-AAGTCCGAGCTCTCAAAACAATT-CCATCAGCAAGGCAACTG
CCAGGTACAACCAATGAAGGCCAGACCTTAGGTTTTCACCCTCAAAATCTCGGCTTGGCACCCGAGGAGCATTATAAAAA
ATGAAATTGTCTCGTG----CTGCCACCCCCACTTGGCACTGCTGCTCCTAAGACTTATCAAACAACTGGCTGACTCCAT
CGCC-------TCGAAGGCCCCGTCCGTCTAACTGGTCCTTGGATGTCCGTCTAACTGGTCCTCCGATCTCAGC----CA
CCATGACCTTCTCCACAGCTGTTTGCACCATAGAAATTGAGAAGCC----GAC-ATGTCCCATGGTGCCAATAAACAACA
GAGCTTCGCGTCACGCCCTCATGGAACTTCGTAGGCTCAAATGGACATGCACGACCAAATTCTATCCGATCCAGATAT-C
TTGGGCAAGATCTCCAACAGAAGTTTCGGAACACGTCGATGACCAGATCGAGGAGGAT----------------------
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>chr7B_92
--------------------------------------------------------------------------------
-----------------GTCTCTGCACCTACAAGATGTTGCAAATACATCTGG-ATACACATAATCAAAGAAAAAAATTA
-AAAAGAAAAGA------AAAAACAAAGATCCCGCCACAATGATTGACTTTTCTCAGCAGCCACA-CAAAAACCACCACC
GAAT-ACAACACTTGGAAAACATAAA-AAATCTCCAAAAGCAAAACCTCCAAGAAGGAAATAG--TGCACAAGCGCTGTC
ATTGCCCGATCCGAGATCTTGCGTTTTCACCCTGGAG-AAGTCCGAGCTCTCAAAATAATT-CCTTCAGCAAGACAACTG
CCAGGTACAACCAATGAAGGCTAGACCTTAGGTTTTCAGCCTCAAAATCCCGGCTTGGCACCCGAGGAGCATCATCAAAA
AATAAATTGTTTCGTG----CTGCCAACCCCACTTGGCACTGCTGCTCCTAAGACTTATCAAACAACTGGCTGACTCCAT
CGCC-------TCGAAGGCCCCGTCCGTCTAACTGGTCCTTGGATGTCCGTCTAACTGGTCCTCCGATCTCAGC----CA
CCATGACCTTCTCCACAGCTATCTGCACCATAGAAATTTCGAAGCC----GAC-ATGTCCCATGGTGCCAATAAACAACA
TAGCTTCGCGTCACGCCCTCATGGAACTTCGTAGGCTGAAATGGACATGCACGACCAAATTCTATCCGATCCAGATATC-
TTGGGCAAGATCTTCAACAGAAGTTTCGGAACACGTCGATGACCAGATCGAGGAGGATC---------------------
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>chr7D_115
--------------------------------------------------------------------------------
----------------------------------------CAAAGACATTTAGGATGCACACAACCCGAAA-AAAAAAGA
AAGAAATG--------AAAAAA--A-TGGCCGCGCCAAAGTGATCAACTCCTCTCAACATCGGCA-CAC-AACCACCATC
AAAG-ACAGCACCCGAAAAACATAAA-AGGCCTCCAAAAGCGACGCCTTCAAGAGAGAAACAG--TGCACAAGCGTCGTC
GTCGCCCGATCCAAGATTATAGGTTTTCACCTTGGAGAAAGACCGAGCTCTCAAAACAATA-CCTTCAACAAGGTAATTA
CCAGGCACATCCAATGAAGGACAGACCTTAAGTTTTCACCCTGAAAGTCACAACTCGGCACCCGAGGAGCATCACCAAAA
ATGAAATTCTCCTGTG----CTGCTGCCCCCACTTGACACTGCTGCTACTGAAAGTTATCAAACATCTGGCTGACTCCAT
CGCC-------TATAAGGCCCCA-----------------------TCCGCCTTACTGATCCTCCGATCTTAGC----CA
TCAAGATTTTCTCCGCTGCTGTCTGTGCCATGGAAATCGAGATGCC----GAC-ATGTTCCATGGTGTCGACAAACGACA
GAGCTTCGCGACGCGCCCTCCTGGAGCCACGTAGGCTGATATGGACGTGCACGACCGGATACTATCCGGTCCAGATATCC
TTGGGCAAGATCTCCGGCAGTAGTTCCGGAACACGTCAACAGTCAAATCGAAGAGGATCGATCATGG-------------
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>chr1A_160
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-----------AAAAAAAACTA--A-ATACCTCACCACAGTGATCAATTCCTCTCAGCAGCAACA-CAAAAACCACCACC
AAAG-ACAACACCCGGAAATCATAGA-AGGTCTGCAAAAGTGGCGACTTCAAAAAAGAAACAG--TGCACAAGCGCAATC
GTTGCCCGATCCAAGATCTTAGGTTTTTGCCTTGGAGAAA-CTCGAGCTCTCAAAACAATA-CCTTCATCACGGCAATTG
CCAGGCACAACCAATGAAGGTCAGACTTTAGGTTTTCACCCCGAAAGTCACGACCCGACACCCGAGGAGAACCACCGAAA
ATGAAATCCTACAGTG----TTGCCGCCCCCACTTGTCACTGCTGCTTCTGAAAGTTATCAAACACCTGGCTGACTCCAT
CACC-------TCCAAGGCCCCA-----------------------TCCGCCTTACTGATCCTCCGATCTTAGC----CA
CCATGACATTCTCCATTGCTGTTTAGGCCATGGAAATCGAGATACC----GAC-ATGTCCCATGGTTCCAACAAACAA--
-AGCTTCGCGTCACGCCCTCGTGTAGCCACGTAGGCTGATACGG-CGCTCACGGCCGGAATCTATCCGATCTAGATATCC
TTGGGTAAGATCTCCATCAGTAGTTCCGAAACACGTCGACGGCCAGATCAAGGAGGAT----------------------
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>chr7B_208
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---------------------------------------------------------------CA-CAAAAACCACCACA
GAGT-ACAACACCCGAAAAATATAAAGAAGTCTTCAAAAGCAATGCCCCCAAGAAGGAAATAA--TGCACAAGCGCTCTC
ATTGCCCGATCCAAGATCTTAGGTTTTCACCCTGAAG-AAGTCCGAGCTCTCAAAACAATT-CCTTCAGCAAGGCAATTG
CCAGGTACAACGAATGAAGGCCAGACCTTAGGTTTTCACCCTCAAAATCCCGGCTTGGCACCCGAGGAGCATCACCAAAA
ATGAATATGTCCCGTG----TTGCCACCCCCACTTGACACTACTGCTCCTAAGACTTATCAAACACCTGCCTGACTCCAT
CGCC-------TCGAAGGCCCTGTCTGTCTAACTAGTCCTCCGATGCCCGTCTAACTGGTCCTCCGATCTCAGC----CA
CCATGACCTTCTCCACAGATGTCTGTACCATAGAAATCGAGAAGCC----GAC-ATGTCCCATGGTGCCAATAAATAACA
GAGCTTTGTGTCACGCCCTCATGGAACTTCGTAGGCTGAAATGGATGTGCCCGACCGAATTCTATCCGATCCAGATATC-
TTGGGCAAGATCTCCAACAACAGTTTCGGAACACGTCGATGACTAGATCGAGGAGGACCAAT------------------
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>chr7D_856
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---------------------------------AACTGAAATTATACGAGAACGACCTTTACTAAAAATAGAAGAAACAT
AAAGTTGACCCTGCACTATTCTAGCACGTCCTTGGAGACGCG-CCAACCAAACCCATCCACCTGTGTATTA---AAGAAA
AGGGTTAAAATCTCAATCAATCAACTTGTCGTCACCGTGGAGTATCATTCTCCAACGGCCCT-TCATAGTTCCACAAACA
ACTCGCCTCGAATTTAACCATTCATTCCAGCTACGTACATTTGATCAATCCA-----ACTTCACAGACCTTGCACATCCA
TGGAGCAAAACAGCACGCTTCTTCAGCGCGTGCTGCAGAAGGCAGCACGAGCAGCAAGAACCATCGCTTACCTCCGCCCA
TCTCCTCCTCCGACACCGTCAACACCCTGCCGCCGTCTCCCGCCCAGCCTGCTGGACTGCACTG---ACGACGACGACGG
CGGGTCTCCGAGCTTCCACACGGCGGCAAGCACGCCAGCGGAGACGCCGCCGTCCGTCCACTCGACGACAGACAGCCCTG
GCTCCGCCGACATCGACAGCCGCGCCGCGGAGTTCATCGAGCAGTTCCGGCGAAACGCGTCCCTCGAGCTGCGGTACTGC
TCCCCGGTGACCCCCGCCAGGCCGCCCGCGTCGCCGGACACCTAATTCAACCTCTCGAGGCTGCACAGCCCGGCGCTGGC
ACATGCGCCGCCGATGTGCGGGAGGAGCTCGCCGAGGGCGAGCGCGAGC------GCAACGTCCATCAAGTGGCCGAGCA
GCACGTGCCTTGGAAGGAGGCCCACTGTTCAGGTGTAGCAGTAGCGGTGAGCCGGTGATGATCCGCATGCAAACCGGAAG
AGTCGGGTTCGATCGGC---------------------------------------------------------------
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>chr7A_856
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---------------------------------AACTGCAATTATACGAGAACGACCTTTACTAAGAATAGACGAACTAC
AAAGTTGACCCT-CGCTATTCTCGCACACCGTGGCAGACGGCACCGATCAAACCCGTCCACTTGTGCATTATTAAAGAAA
AG----AAAATCTCTATCAATCAACTCGTCGTCACCCTGGAGTATGATTCTCCAACGGCCCT-TCATTCTAGGTAGAAGC
A-----------------------------CTACGTACATTTGATCAATCCCTTCACACTTCACAGACCTTGCACATCCA
TGGAGCAAAACAGTACGCTTCTTCGGCGCGTGCTGCAGAAGGCAGCACGAGCAGCAAGAACCATTGCTTACCTCCGCCCA
TCTCCTCC---GACGCCGTCACCGCCCTGCCGCCATCTCCCACCGAGCCTGCTGGACTGCACTGACGACGACGACGACGG
CGGGTCTCCGAGCTTCCACACGGCGGCGAGCACGCCAGCCGAGACGCCGCCGTCCGTCCGCTCCAGGACGGACAGCCCGG
GCGCTGCCGACACCGACAGCCGCGCCGCGGAGTTCATCGAGAGGTTCCGGCGCAACGCGTCCCTAGAGCTGCGGTACTGC
TCCCCGGTGAGCCCCGCCAGGCCGCCAGCGTCGCCGGACACCTACTTCAACCTCTCGAGGCTGCACGGCCCGGCGCTGGC
ACATGCGCCGCCGATGTGCGGGAGGAGCCCGCCGGGGGCGAGGGCGAGC------GCTACGTCCATCAAGTGGCCGAGCA
GCACGTGCCTTGGAAGGAGGCCCACTGTTCAGGTGTAGCAGTAGCGGTGAACCGGTGATGATCCGCATGCAAACCGGAAG
AGTCGGGTTCGATCGGTGGACAAAGTCTGGTCAGCCGTGGCCAAAAACTGGGCAAGACAAAGTTCAGAT-----------
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>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------
--------------S---------------S--------------------------S--------S-------------
-----S---------------S-----S----------------------------S----------------------S
-----------------------S------------------------------S-------------------------
-----------------------------SS--------------------S---------S------------------
S------S-----------S-----------------------------S--------------S---------------
------------------------------------------------S----------------------------SS-
----SSSSSSS---------------------------------------------------------------------
-----------S---------------------------S----S-----------------------------------
-----------------------------------------------------------------S-------S------
-------S-------S---------------S--S---------------------------S----SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
----------S------------S-----------------------------------------------------S--
-------------S----------------------S--------------------S----S-----------------
-----------S-------S---S-------S--S----------------------S-------------------S--
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--------------------------------------------------------------------S-----------
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--------S----S-----S-----------------------------SSSSSS--------------S--------S-
S---------S-----S-----S----------------------------------S--S-------------------
-----S------------S-----------------S-----------S---S---------S--SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_832
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------------TCCCGCAACAGTTTCGGAAT------------------------------------------------
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>reverse_1941
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--------------------TTCGCGACCTTTTGCTCTCT----------------------------------------
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>forward_1883
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-----------------------ACATTCAGTCGGGAGCAAGG-------------------------------------
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>reverse_2895
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--------------GGAGGGGTGATTTCAGGGTG----------------------------------------------
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