>input_sequence_62395
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---------------------ATGGCGACGACTCCGAGAGCCACGGTTCCTCACGTCCGGAGCGACTCCGAGTCCGACGA
CGAAGGCCGCCGGGCGCCCAACGTCAGCGTCTTCCGCCGGCAGCGGCCGGTGCACCGGTTCCTCGGCGGCCGGAAAGGTG
AGGCGC----TCC-ATCGAGCATTAACATTTTTTCT---CCTCTGAGAACCGCACCGCACGCACTGTCACCTACTGACTG
AATGCCGTGTGGTCTCTGAACTGTTGGCAGTGGCGGACGTGCTGCTGTGGCGGGACCGGAACCTGTCGGCGGGCATGCTG
GCGGGGGCGACGGCGGTGTGGTTCCTGTTCGACGTGGCCGAGTACAACTTCGTGACGCTGCTCTGCCACGCCGCGCTGCT
CGGGATGCTCCTGCTCTTCCTCTGGTCCGTCACGGCGCCGCTCTTGGGCAGGGCACCGCCGCGCGTCCCGGAGGTGATCG
TGTCGGAGCACGCCTTCAGGGAGGCGGCCATGGCGGTGCACCGCAAGCTGGAGCGCTCCGTGGCGGTGCTCTACGACATC
GCCTGCGGCAAGGACCTCAAGAAGTTCCTCTCGGTACCACAGTC----TCTTCTCCCTTGTTTGCACGTGCCCCATGCAT
CATCTGACAGTGCCCGGCTATTTCCTTCGGCTTAGCCAAGTAGCTGACCGTCTCCTATATGGCTATATGTTCTTTTCCTC
CATGC---AAGGTGATTGGATCTCTGTGGGTGGTGGCGGTGATCGGGGACAACTGCAGCTTCACGACTCTGGTCTACGTT
GGTAAGGATAC-ATCACCAAAAAATTAACAAACAAAAAAAAAGCAGACA--------TGATGATCGACGAACTAAGGATT
TTTTGTGATTTGTTGTTCGTTGGGGTGCAGGATTCTTGTGTGCTCTGACGTTGCCGGCGCTTTACGAGAGGTACGGGACG
GAGGTGGACCACCTGGTGGCCAAGGGCGGCGAGGACCTCCAGAAGTTCTACAGGAAGGTGGACGCCAACGTGCTGGACAA
GATCCCCAGAGGCCCCGTCAAGAGCAAGAGAGCGCACTTCCACTAG----------------------------------
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>chr1D_1_TraesCS1D01G380400
GTTAGTTTCATTCAAATTATACAAATTAGATTTCAAAACAAGGGCCAAAGTATTTTTGAAAAGTAGATACAATGAAGACG
TATGAGTG--GGTTACGCCTGTTAGGTTGGGCTGCTCTTTCTGTCTCTCCCTCTC-TT-TTTTGCTATTTTCATGTTTGT
CTTAAAACAATTTCACAAATAGTTTTTACGCAAGGAAAAGAAGCAGAAAATGTAGGGTTTTAATTTGAGATGAAAGAGGA
AAATTCCTACAAAAGCGCGTCAAACGAAATGGAACATGATGAAGGCGAAGGTGCAGAAAACTAAGTATAACAAATTATTC
TTACTGGTTGGAAACATATTTCAAAGCCTAAGACCATTACTTTTTTTTTTTTGAAGTATTGATATGTTTATCTAAATTAA
T--------AACCGTGGCAATGCACGGGCATTTCAGCTAGTTATCAGGTAGAG---------------------------
------GGGCGGTGTTGCATTATTTTAATGCCTGGTGAATTTGGCATCGTA--CATGCCGTGGATAAGCCTCCCGGTGGT
TAATTATAACTGAAGAACAAAGCTTTTTACCAACAGTCTGAACTCTGAACCCAATGCCGTTGGTAGAAATGCTCGAGGCA
CAGGCAATGCAGGGGGGACACCCT-TCGTCCAAGCAAAGTAGAAATGCTTTGACGGAGCTGCACTCACAGACGCACGTAG
GAGCCAACAAGATGCAAACGCAAGACACTGTTTTAAAAAGCATGCACAAATCTTTTACTGTGAGAGAGTTGGCTGGCTCC
CGAGTCTTGGAGGCTCTGGCAAGGGCATCTCCCCGGCCCCCGGCAAACCTCCGCCTGAAGCAAGCCTCTTGCCCCGGCAT
CCCTCCACC---------CCCCCCGGCACAAAGCTATCCCTTCCTTCCCGGACTGATCGACCTCCCATGCTCTTTCCGGC
ATGAACGAAGCGCTTATAAGTCGAGAAACTTGTGTGACCTGCATGCCCAGCGCTCACCAGATCAGAACTTCAGAACACCA
CCAC----GAGAGCGGCAGCGATGGCGACGACTCCGAGAGCCACGGTTCCTCACGTCCGGAGCGACTCCGAGTCCGACGA
CGAAGGCCGCCGGGCGCCCAACGTCAGCGTCTTCCGCCGGCAGCGGCCGGTGCACCGGTTCCTCGGCGGCCGGAAAGGTG
AGGCGC----TCC-ATCGAGCATTAACATTTTTTCT---CCTCTGAGAACCGCACCGCACGCACTGTCACCTACTGACTG
AATGCCGTGTGGTCTCTGAACTGTTGGCAGTGGCGGACGTGCTGCTGTGGCGGGACCGGAACCTGTCGGCGGGCATGCTG
GCGGGGGCGACGGCGGTGTGGTTCCTGTTCGACGTGGCCGAGTACAACTTCGTGACGCTGCTCTGCCACGCCGCGCTGCT
CGGGATGCTCCTGCTCTTCCTCTGGTCCGTCACGGCGCCGCTCTTGGGCAGGGCACCGCCGCGCGTCCCGGAGGTGATCG
TGTCGGAGCACGCCTTCAGGGAGGCGGCCATGGCGGTGCACCGCAAGCTGGAGCGCTCCGTGGCGGTGCTCTACGACATC
GCCTGCGGCAAGGACCTCAAGAAGTTCCTCTCGGTACCACAGTC----TCTTCTCCCTTGTTTGCACGTGCCCCATGCAT
CATCTGACAGTGCCCGGCTATTTCCTTCGGCTTAGCCAAGTAGCTGACCGTCTCCTATATGGCTATATGTTCTTTTCCTC
CATGC---AAGGTGATTGGATCTCTGTGGGTGGTGGCGGTGATCGGGGACAACTGCAGCTTCACGACTCTGGTCTACGTT
GGTAAGGATAC-ATCACCAAAAAATTAACAAACAAAAAAAAAGCAGACA--------TGATGATCGACGAACTAAGGATT
TTTTGTGATTTGTTGTTCGTTGGGGTGCAGGATTCTTGTGTGCTCTGACGTTGCCGGCGCTTTACGAGAGGTACGGGACG
GAGGTGGACCACCTGGTGGCCAAGGGCGGCGAGGACCTCCAGAAGTTCTACAGGAAGGTGGACGCCAACGTGCTGGACAA
GATCCCCAGAGGCCCCGTCAAGAGCAAGAGAGCGCACTTCCACTAG----GGTTCATCAATATATACATCG----TGGTT
GATTTCAGGAGGTCGTGATGGTGATAGTG--C-CGGTGCGTGCGTACGGGGTTTGGTTTCAGGGGAAATGGCAAATGGAC
TCACAA----AGTCTAGTTCAGTTGCGAGTCGTGGCAAAGTGTGTGTATGT--------------------GTGTGTGTG
TGTGTGTGTGTGTGCCTGTTATAAACTGTTA--ATTGTGCTACGGATATGATGGAAGTAATGAGAGTTGAGTTGAGTGAT
GTTCCTGTGAGAATTGCTTCTTGTTGGTGTC------------------------CCCCTTCTCAAAGTGAAACAAAACG
CAGTGCCAAGCAAAGTAGAGAAGATGAAAAAATGGGAATGGACGCCACAGCACCGCGACCGCCATGTCATGGGCATAGGG
CACGATCACCACTGTCTTCCCGCCGCGCCATCCAGCCTTCCTCTCCGACGGCCCCCATCCACAAACCAACATCGCATATG
TCAGGCCTTCTACATCGGCGGTGCATCCGAAGACGGCTAAGAGTTTAGCCCTGATGTCGGGCACCATTGCGACCGAGCTT
TCAAGAG--------------------GCAGCAACAACTAATTTCTCTCAAGTAGCACATAGCAGCATGAACCACTCTCA
GATTTACTGCTGCAGCCTGCAGATAACTAGCTTGGTGTGCAACAAGGCAACCCAACCCATGGTACTTGTGGAATTTTGTT
AGAATCACAAAATGTAACCAAAATGAATCCTATATGGATCAAGGACAAGCCCCTTCGATCCA-CACAACGGCTAACACTC
GACGGAATCTCTTGCTTGCAGCAGAGCACCCAAACACACAATCCCACCGACTGCCTACAAACTCAAATTCAGAATTCTCA
TTCACTTTCACAACGAAGATGTGGGGATACTTATACTAGAGGCACA-------TAGGCTTGGGAAAACTGAAAAACAGAG
GATTAATTCGTGAGAAACAAGCTGTGAATGGAGCAAACTTGCGGAGTCTTGGCAGTAAGTAACTCTTGGGCCGCTTGCAT
GGAAATTGCATAAGT
>chr1B_1
GTTAGTTTCATTCAAATTATACAAATTAGATTCTAAAACAAGAGCCAAAGTGTTTTTGAAAAGTAGATACGATGGAGACG
TATGAGTG--GGTTACGCCTGCTAGGCTGGGCTGCTCTCTCTGTCTCTCCCTCTCTTT-TTTTGCTATTTTCCTGTTTGT
CTTAAAACAATTTCGCAAATAGTTTTTACATAAGAAAAATAAGCAGAAAAATTAGGGTTTTAATTTGAGATGAAATAGGG
AAATTCCTACAAAAATGCGTCACACGAAATGGAACATGATGAAGACGAAGGTGCAGAAAACTAAGTATAACAAATTATTC
TTACTCATCGGAAACATATTTCAAAGCCTAAGACCATTACATTTTTT------AAGTATTGGTATATTTATCTAAATTAA
TTCTTTCGTGACCGCGGCAACGCACGGGCA-TTCAGCTAGTTATCAGGTAGAG---------------------------
------GGGCGGTGTTGCATCATTTTAATGCCTGGTGAATTTGGCATCGTGTGCACGCCGTGGATAAACCTCCTAGTTG-
---TTATAACTGAAGAACAAAGCCTTTTACCAACAGTCTGAACGCTGAACCCAATGCCGTTGGTAGAAATGCTCGAGGCA
--GGCAATGCAGGGGGAACCCCCCCTCGTCCAAGCAAAGTAGAAATGCTTTGACGCC---------------------AG
CAACCAACAAGATGCAAACGCAAGACACTGTTTTAAAAAGTATGCACAAATCTTTTACCGTGAGAGAGTTGGCTGGCTCC
CGGGTCTTGGAGGCTCTAGCAAGGGCATCTCCCCGGTCCCCGGCAAACCTCCGCCGGAAGCAAGCCTCTTGCCCCGGCAT
CCCTCCACC---------CC-TCCGGCACAAAGCTATCCCTTCCTTCCCGGACTGATCGACCTCCCATGCTCTTTCCGGC
ATGGACGAAGCGCTTATAAGTCGAGAAGCTTTTGTGACCTGCATGCCCAGCGCTCACCGGATCATCACACCTGCACAACA
CGCCACGAGAGAACGGCAGCGATGGCGACGACTCCGAGAGCCACGGTTCCTCACGTCCGGAGCGACTCCGAGTCCGACGA
CGAAGGCCGCCGGGCGCCCAACGTCAGCGTCTTCCGCCGGCAGCGGCCGGTGCACAGGTTCCTCGGCGGCCGGAAAGGTG
CGGCGT----TCGTATCGAGCATTAACATTTTTCTCCCCCCTCTGAGA-----ACCGCACGCACTGTCACCTACTGACTG
AATGCCATGCGGTCTCTGAACTGTTGGCAGTGGCGGACGTGCTGCTGTGGCGGGACCGGAACCTGTCGGCGGGCATGCTG
GCGGGGGCGACGGCGGTGTGGTTCCTGTTCGACGTGGCCGAGTACAACTTCGTGACGCTGCTCTGCCACGCCGCGCTGCT
CGGCATGCTCCTGCTCTTCCTCTGGTCCGTCACCGCGCCGCTCTTCGACAGGGCGCCGCCGCGCGTCCCGGAGGTGATCG
TGTCGGAGCACGCCTTCAGGGAGGCGGCCATGGCGGTGCACCGCAAGCTGGAGCGCTCCGTGGCCGTGCTCTACGACATC
GCCTGCGGCAAGGACCTCAAGAAGTTCCTCTCGGTACCATATATACTTTCTTCTCCCTGGTA------------------
-----------------CTTTTCTCAACTGATTAGCGAACTAACTAATCATCTCCTCCTCC--------------TCCTC
CATGATGAAAGGTGATTGGATCTCTGTGGGTGGTGGCGGTGATCGGGGACAACTGCAGCTTCACGACTCTGGTCTACGTT
GGTAAGTACAATATCACCTAAAATTTAACCAAAAAAAACATAAAGATCAAAGGCATGTGATGATCAACGAACTAAGGGTT
TATTGTGATTTGTTGTTTGTTGGGGTGCAGGATTCTTGTGCGCTCTGACGTTGCCGGCGCTGTACGAGAGGTACGGGACG
GAGGTGGATCACCTGGTGGCCAAGGGCGGCGAGGACCTCAAGAAGTTCTACCGGAAGGTGGACGCCAACGTGCTGGACAA
GATCCCCAGAGGCCCCGTCAAGAGCAAGAGGGCGCACTTCCACTAGCTAGGGTTCATCGATCAATGCATCG----TGGTT
GATTTCAGGAGGTCGTGATGGTGCCGGTGCCGGCGGTGCGTGCATACGGGGTTTGGTTTCAGGGGAAATGGCA-ATGGAC
TCACCAAG--AGTCTTGTTCGGTTGTGAGTCGTGGCAAA-----------------------------------------
---GTGTGTGTGTGCCTGTTATAAACTGTTATTATCGTGCTACGGATATGATGGAAGTAATGAGAGTTGAGTTGAGTGAT
GTTCCTGTGAGAATTGCTTCTTGTTGGTGTCGTCTGGTGCATGGCTTCGTCTCTCCCCCTTCTCAAAGTGAAAGAAAACG
CAGTGGCAAGCAAAATGGAGAAGATGAAAAAATGGGAATGGACGCCACGACACCGCGACCGTCATGTCATGGGCAGAGGC
ACAGCACACACAGTC-----------------------------------------------------------------
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>chr1A_2
-TTAATTTCATCCAAATTATCCAAATTAGAGTTAAAAA--AGAGCAAAAGTA-TTTGAAAAGGTAGATACAATAGGGACG
ATGTATCAGTGGCTACACTTGATAGGCTGGGCTGCTCCCTCACTCCCTCTTTTTTTTCCTTTTGCTATTTTTCTTTTTGT
CTTAAAACAATTTCGTAAATAGTTTTTACAGAAGGAAAAGAAGCAGAAAAATGAGGGTTTTAATTTGAGATGAAAGAGGA
AA-TTCCTACAAAAATGCGTCACACGAGATGGAACATGATGAAGTCAAAGGTGCAGAAAACCAAGTATAACAAATTATTC
TTACTCATCACAAACATATTTCAAAGCCTAAGACCATTACATTTG----TTTCAAGTATTGGCATATTTATCTTAATTAA
TTCTTTCGTAACCGTGGCAACGCACGGGCA-TTCAGCTAGTTATCAGGTAGAGACGACGGTGGCAGTCAAAAAAAAAAGG
TAGAGAGGACGGTGTTGCGTCATTTGAATGCCTGGTGAATTTGGCAATC-GTGCACGCCGTGGATAAGCCTCCTAGTGG-
---TTATAACCGAAGAACAAAGCTTTTTACGAACAGTCTGAACTCTGAACCCAATGCCGTTGGTAGAAATGCTCGAGGCA
--GGCGATGCAGGGGGAA-CCCCCCTCGTCCAAGCAAAGTAGAAATGCTTTGACGGAGCTGCACTCACGGACGCACGTAG
CAACCAACAAGATGCAGACGCAAGACACTGTTTTAAAAAGCATGCACAAATCTTTTACCGTGAGAGAGTTGGCTGGCTCC
CGAGTCTTGGAGGCTCCAGCAAGGGCATCTCCCCGGTCCCCGGCAAACCTCTGCCGGAAGCAAAAGACTTGCCCCGGCAT
CCCTCCAACCCCCGTGTGCC-CCCGGCTCAAAGCTATCCCTTCCTTCCCGGACTGATCGACCTCCCATGCTCTTTCCGGC
ATGGCAGT---GCTTATAAGCTGAGAAACTTTTGTGACCTGCATGCCCAGCGCGCTCACCAG-ATCACACCTGCACAACA
CGCCACGAGAGAACGGCAGCGATGGCGACGACTCAGAGAGCGACGGTTCCTCACGTCCGCAGCGACTCCGAGTCCGATGA
CGAAGGCCGCCGCGCGCCCAACGTCAGCGTCTTCCGCCGGCAGCGGCCGGTGCACAGGTTCCTCGGCGGCCGGAAAGGTG
CGGCCGGCGCTCGTATCGAGCATCTT--TTTTTTTC---CCTCTGAGCTGTTCAATTTCTGAACGTCGGCAATATATG--
------------------------TGGCAGTGGCGGACGTGCTGCTGTGGCGGGACCGGAACCTGTCGGCGGGCATGCTG
GCGGGGGCGACGGCGGTGTGGTTCCTGTTCGACGTGGCCGAGTACAACTTCGTGACGCTGCTCTGCCACGCCGCGCTCCT
CGGCATGCTCCTGCTCTTCCTCTGGTCCGTCACCGCGCCGCTCTTCGACAGGGCGCCGCCGCGCGTTCCGGAGGTGATCG
TGTCGGAGCACGCCTTCAGGGAGACGGCCATGGCGGTGCACCGCAAGCTGGAGCGCTCCGTGGCCGTGCTCTACGACATC
GCCTGCGGCAAGGACCTCAAGAAGTTCCTCTCGGTACCATG----CTTTCTTCTCCCTTGTTTGCACGTGCCCCATGCAT
CATCTGAGCTCAGTGAACTAATTTCGTCCATTATTCTTGTTCTGAAC---------------------------------
---GC---AAGGTGATTGGATCTCTGTGGGTGGTGGCGGTGATCGGGGACAACTGCAGCTTCACGACTCTGGTCTACGTT
GGTAAGCATCCCCGAATTTTGATCAACAAC----AACAAAAAAAAGACA--------TGATGATCGACAACAAAAAACAT
T-----------TTGTTCATTGTGCTGCAGGATTCTTGTGCGCTCTGACGTTGCCGGTGCTGTACGAGAGGTACGGGACG
GAGGTGGACCACCTGGTGGCCAAGGGCGGCGAGGACCTCAAGAAGTTCTACAGGAAGGTGGACGCCAACGTGCTGGACAA
GATCCCCAGAGGCCCCGTCAAGAGCAAGAGAGCGCACTTCCACTAGCTAGGGTTCATCGACCAATGCATCGTACATGGTT
GATTTGAGGAGGCCGTGATGGTGATGGTGTCC-CGGTGCGTGCATACGGAGTTGGGTTTCAGGGGAAATGGCA-ATGGAC
TCACAAATTAAGTCTTGTTCAGTTGCGAGTCGTGGCAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGCCTGTTATAAACTGTTATTATTGTGCTACGGATATGATGGAAGTAATGAGAGTTGAGTTGAGTGAT
GTTCCTGTGAGAATTACTCCTTGTTGGTGTCCTGA--TGCATGGCTTCGTCTCTCCCCCTTCTCAAAGTGAAAGAAAACG
CAGTGCCAAGCAAAATAGAGAAGATAAAAAATTGGGATTAGACGGCACCACACC----CCGTCATGTCATGGGCCTAGGG
CTCGATTAACGCTATCTTCCCGCCGCCCTA--------------------------------------------------
--------------------------------------------------CTGATGCCGGGCACTATTGCGACCGATCTT
AATTTCAAGGCATGAGACAATTCATGAGCAGCAACAACTAATTTCTCTCAAGTAGCACACAACAGCAGGAACCACTCTCA
GATTTACTGCTGCAGCCTGCAGATAACTAGCTTGGTGTGCAACAAGGCAACACAACCCATGGTACTTGTGGAATTTTGAT
AGAATCACAAAATGTAACCAAAATGAATCCTATATGGATTAAGGACAAGCCCTTCGATCCACGCACAACGGCTAACACTC
GACGGAATCTATTGCTTGCAGCACAGCACCAACAAACACAA-----------GCCTACAAACTCAAATTCAGAATTCTCA
TTCACCTTCACAAGGAACATGTGGTGATACTTATACTAGATGTCCATATTAGTTAGGCTTGAGGACAACTAAAAACAAAG
GATTAATTTGTGGGACACAAGCAGTGGATGGAGCAAACTTGCGGAGTCTTTGCAGCAATTAATTCTCGGACCGCTTGTAC
GGAAATTGCATAAGT
>SNPs
---------------------------------S--------S-------------------------------S-----
---------------------S----S-----------S---------------------------------S-------
--------------S--------------SS-------------------SS----------------------------
--------------SS------S---------------------S-----------------------------------
-----SS-S-------------------------------S------SS---S--------S---S--------------
--------------------S---------S-------------------------------------------------
--------------------S-----------------------------S----S-----------------SS----S
SSS-----------------------------------------------------------------------------
SS--------------S--S---S--------------------------------------------S-----------
S-S-------------------------------------------------------S---------------------
-----------------S------------------S------------------S------------------------
--------------------S-----------------------------------------------------------
---S---------------------------S--------------------------S-----SS--SS-S-S---S--
-SS---------S-------------------------------------------------------------------
-------------------------------------------------------S------------------------
S----S------S---------------------SS------------SSSS----------------------------
------S--S----------------------------------------------------------------------
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---S-----------------------------S-----------S-S------S-------------------------
----------------------------------------------------------------S---------------
---------------------------------------S-SSS------------------------------------
-------SSSSSSSSSS------S-S--S-S-----S--S--S--S-S-S------SSSSSSSSSSSSSSSSSSS-----
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------S-----------S----S-----S--S---------SS---------------------------------S--
-S--------------------------------------S--------------------S------------------
---------------------------------------S----------------------------------------
----------------------------------------------------------S--SS--S--------------
-------------------------S-----------------S-----------------------------S------
---------------S-------------------------------S--------------------------------
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-------------------------------------------------------------------------S------
--------------S---------------------------------SS-----------S------------------
-S--------S--S------------S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------S-----------S---
SSSSSSS----------------------------------------------------S-S-----S------------
---------------------------------------------------S--------------------------S-
---------------------------------------S------------S-SSSSS-SS------------------
----------S------------S------S-S-S------SSSSSSSSSSS----------------------------
-----S-------S---S------S---------------S-SS-----------------S-S-S-SSS-------S--
--------S---S--S------S---S-----------------------S----S--S---S---S--S-------S-S
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>forward_1029
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-------------------------------------------------GCGCTCACCAGATCAGAACT-----------
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>reverse_3004
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-------------------------------------------CCACCGACTGCCTACAAACT-----------------
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