>input_sequence_62388
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--------------------------------------------------------------------ATGTCGCTGCTG
TCGAGGCTGCGGCTGGTGACCGTGGACGTGACGGGGACGCTGATCGCCTACAGAGGGCAGCTCGGCGACTACTACTGCAC
GGCGGCCAGGTCCGCCGGGCTGCCGTGCCCCGGCTACGCGCGCATGCACCAGGCCTTCAAGGCCGCCTACGCCGACATGA
CGGCCAAGCACCCCTGCTTCGGCCACGCCTCCAGGATGCCCGACCATCGCTGGTGGAGGACGTGCGTCAGGGACTCCTTC
CTCAGGGTAAGGTGAAGGTCGGTGCTCTGCCGTGCCCTGTTCGTTTCTCCAAGAAACTCCGAAGCGTGAGCA-------A
ATC----TCGTGCGTGTAGAATGTGCAACTACTCTATTCTGATGCTCTCTCGGCC-TTTTTCTCTTGGTTGTTGGTATGT
A-TGCTGCAGGCAGGACACGAGTACGATGATGCCACATTTGAGCGGATCTTCGGGCAAATCTACGCCGCCTTCGGCTCCC
CCGCCCCGTACTCGGTGTTCCCCGACGCGCGGCCCTTCCTCCGGTGGCTGCGCGGCGAGGGGATCATGGCCGGGGTCGTC
ACCAACGCGGACTGCCGCTACAGGGACGTCGTCCTGCCCGCGCTGGGGCTGAACCAGGTCGGCACTCGGCAGGCAGCCGC
CCTCGACCGCCGTCTCGCTCGCGCTGCCGGAAGCTATACATTGCTCAGTTCTGTTTCTGATTGATGTGCGCAGGGGTCCG
AGTGGGACTTCGGGGTGTTCTCGGGCGTCGCCGGCGTCGAGAAGCCCGACCGGCGGATCTACGAGATGGCGCTGGAGGCG
GCCGGGGGCGTGGCGCCGGAGGAGGCGCTGCACATCGGCGACAGCATGAGCAAGGACTACGCGCCGGCCCGGGCCGTCGG
GATGCACGCGCTGCTGCTGGACAGGTTCGGGACCGCTGATGCCGAGAGGTGGCGGCGGTCCGGCGCGGTGGTGCTCCCTG
ACCTCGTCTCCGCCCGGGAGTGGCTCATCCGGGATCCCCCTGCCGCGCATGGAGGAACCGACAACGCCTGGGCGGAGGAG
TGA-----------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G155900
TTACCTTCGCCTGTTAATAGTTTACTGCTGCTCTCCTCCAATAGGAGGTCCATGCCCATATATGCCTAAATCTAAACTAC
TTCCCAGGGAACTGCCATCAAGGAAAGAATCCAGGAAAGGCTGAAGGAGGCGCAGTCTAGGGACTTCAGCCTTCTACAAT
ACGACAGTGACGACTTTGACGACTTTGAAGAAGAAGACGATGAAGTTGCCAAAGATGCCAAATACGTGAAAGAATAGCGG
CACTGTAAAATTTTATGTC-AAAGTATAATACGGGCATGCAATGCATGTTAACAGTCTTCATCAACCGCAATCCTTCACC
ATGTATCTGTCCCTTTGATCGTGAGCTTCACTGTCAAGGTAGATCTGCGTGCTGTGTTTGTAGCTGTACTTGATGTTTTT
CTAGGCAGTAGCGTACGCTCTTGTAATAGTTCTACTGTGAGGCATAACACTGTTTATTTGGAGGATATCGATTTCAATTC
AAGTTCTTATTAAGAAGACCTGTTTCATTTTGTAATTACACTTGTTTATTTTCCATTCTTGGCATCAGACTCTGAGGTGG
TACTTTTTGTGT-----------------------GATTCATCCTTTG---AATCGGTAGCTTACTCTACAAATGTTGGA
TTCAGTTAAAAAAAAGAGAATGTTGTTTGGATTCCCTGCGCCTCGCCGTGGCGTCTTCACCCTCCCTTGAAGAAAACTCT
TGGGAGGAGGCAGAAAACTTGGGTCCTAGTAAATGAGTTTTCTTGTGAAGCAAGGAGGCTCGAGCCGCTCCCTTTTAAAT
CCCTGCTGCTTGGATTGATCCAAAGAGTTGGCCGTGATCTTTCCTCCCGGGAGTGGGTTAACTCCATCAATCCGGAGAGC
CATGGATTCATGCTTGCTTCCACAGAGGTGGTAGCGTCTTCCTCGCTCTCGTTTTGCCCCGCAGAGCAAGGCATTTGGTG
TTGTTATAAGTCAACCCAAG-AACCATCCGATCCTCTTCTTCTATGCCTCCGTGCGTCGCCGGCTGCCATGTCGCTGCTG
TCGAGGCTGCGGCTGGTGACCGTGGACGTGACGGGGACGCTGATCGCCTACAGAGGGCAGCTCGGCGACTACTACTGCAC
GGCGGCCAGGTCCGCCGGGCTGCCGTGCCCCGGCTACGCGCGCATGCACCAGGCCTTCAAGGCCGCCTACGCCGACATGA
CGGCCAAGCACCCCTGCTTCGGCCACGCCTCCAGGATGCCCGACCATCGCTGGTGGAGGACGTGCGTCAGGGACTCCTTC
CTCAGGGTAAGGTGAAGGTCGGTGCTCTGCCGTGCCCTGTTCGTTTCTCCAAGAAACTCCGAAGCGTGAGCA-------A
ATC----TCGTGCGTGTAGAATGTGCAACTACTCTATTCTGATGCTCTCTCGGCC-TTTTTCTCTTGGTTGTTGGTATGT
A-TGCTGCAGGCAGGACACGAGTACGATGATGCCACATTTGAGCGGATCTTCGGGCAAATCTACGCCGCCTTCGGCTCCC
CCGCCCCGTACTCGGTGTTCCCCGACGCGCGGCCCTTCCTCCGGTGGCTGCGCGGCGAGGGGATCATGGCCGGGGTCGTC
ACCAACGCGGACTGCCGCTACAGGGACGTCGTCCTGCCCGCGCTGGGGCTGAACCAGGTCGGCACTCGGCAGGCAGCCGC
CCTCGACCGCCGTCTCGCTCGCGCTGCCGGAAGCTATACATTGCTCAGTTCTGTTTCTGATTGATGTGCGCAGGGGTCCG
AGTGGGACTTCGGGGTGTTCTCGGGCGTCGCCGGCGTCGAGAAGCCCGACCGGCGGATCTACGAGATGGCGCTGGAGGCG
GCCGGGGGCGTGGCGCCGGAGGAGGCGCTGCACATCGGCGACAGCATGAGCAAGGACTACGCGCCGGCCCGGGCCGTCGG
GATGCACGCGCTGCTGCTGGACAGGTTCGGGACCGCTGATGCCGAGAGGTGGCGGCGGTCCGGCGCGGTGGTGCTCCCTG
ACCTCGTCTCCGCCCGGGAGTGGCTCATCCGGGATCCCCCTGCCGCGCATGGAGGAACCGACAACGCCTGGGCGGAGGAG
TGATTAC-CTG--AAAAATAGGGTGGATAGTTGAGGCATGAGTGAACATTGCTGGAAGTGTATGAAATCCAGGGGACAAA
AGAACAGGTCCTCGG--ATGATACAGTATTCGTTGATGAGATTGCCAACTATTGCAATGTACTGTAAGCAAGAGTGCAAG
TTAAACAAGTTATTCAGAGTTGATGCGCGATGCCAGATCTCTCCAAGGTGCTTACAGGAAAGAGAGTGTGCATATTCATA
AGGTTGAGTGTATGTACGTATTTATAAGCATATGTTTCTGTACTATGTTTTAAAAGAAAACCGCCAGTCGGCTGGTTCGT
GCTCAAGATCAACCGGGGCGCCGATGATCCGATCAAGCATTTTGTGAATGTTCGATCATGCCAACGCATCTCCCCCTCGC
CTCACCACCCATAGTCTTCCCCACGTGCCTCATGGTTCCTCATTTCCCCGCGCACACCGTCGTCCATGTCTCCCTCGCAT
GCCCTTGTATCTCACTCACCCCCCTCACGCACGCGCGCAACACCGACGAAGTGGCACTGACACCCTTGCAGCACCGACAA
CGCACATGTGCAACATCGTGCGCATCATTGGGTGCCCCGGTGCGATTGCTCATCTGCAGCATGATCTGTTGCCTGCAGCA
CCAACCGCGGTCTATTGTGCTGGCATTGACGCCCATGCCCAAGCGGCACAACTCATGTTGCAGCACATCTAGTGACCCCC
CCTGTCGGTGTCAAAACAGGCAGATCTCGGGTAGGGGGTCCCGAACTGTGCGTCTAAAATTGATGGTAACAGGAGACAGG
GGACACGAAGTTTTACCCAGGTTCGGGCCCTCTTGATGGAGGTAATACCCTACGTCCTGCTTGATTGATATTGATGAATG
CGAGTATTACAAGAGTTGATCTACCACGAGATCGTAATGGCTAAACCCTAGAAGTCTAGCCTGTATGACTAAGGTATTGA
GTATCCTTTCCGGACTACACCCTCCGGTTTATATAGACACCGGGGGAT
>chr6D_1
TTACCTTGGCCTGTTAATAGTTTACTGCTGCTCTCCTCCAATAGGAGGTCCGTGCCCATATATGCCTAAACCTAAACTAC
TTCCCAGGGAACTGCCATCAAGGAAAGAATCCAGGAAAGGCTGAAGGAGGCGCAGTCTAGGGACTTCAGCCTTCTACAAT
ACGACAGTGACGACTTTGACGACTTTGAAGAAGAAGACGATGAAGTTGCCAAAGATGCCAAATACGTGAAAGAATAGCGC
CACTGTAAAATTTTACGTC-AAAGTATAATACGGGCATGCAATGCATGTTACGA-TCTTCATCAACCGCAATCCTTCACC
ATGTATCTGTCCCTTTGATTGTGAGCTTCACTGTCAAGGTAGATCTGCGTGCTGTGTTTGTAGCTGTACTTGATGGTTTT
CTAGGCAGTAGCGTACGCTCTTGTAATAGTTCTACTGTGAGGCATAACACTGTTTATTTGGAGGATATCGATTTCAATTC
AAGTTCTTATTAAGAAGTCCTGTTCCATTCTGTAACTATACTTGTTTATTTTCCATTTTTGACATCAAACTTTGAGG---
------------------------AAGTGATAAACGACTCATCCTTTG---AATCAATGGCTTACTCTACAAATGTTGGA
TTCCGTTAAAAAAAAAAGAATGTTATTTGGATTCCCTGCGCCTCGCTGTGGCGTCTTCACCGTTCC--------AACT-T
TGGGAGGAGACAGAAAACTTGGCTCCTAGTAAATGAGTTTTCTTGTGAAGCAAGGAGGCTCGAGTCGCTCCCTTTTAAAT
CCCTGCTGCTTGGATTGATCCAAAGAGTTGGCCGTGATCTTTCCTCCCGGGAGTGGGTTAACTCCATCAAGCCGGAGAGC
CATGGATCCATGGTTGCTTCCACAGAGGTGGTAGCGTCTTCCTTGCTCCCGTTTTGCCCCGCAGAACAAGGCACT-GGTG
--GTTATAAGTCGACCCAAGAAACCATCCGATCCTCTTCTTCTATGCCTCCGTGCGTCGCCGGCTGCCATGTCGCTGCTG
TCGAGGCTGCGGCTGGTGACCGTGGACGTGACGGGGACGCTAATCGCCTACAGAGGGCAGCTCGGCGACTACTACTGCAC
GGCGGCCAGGTCCGCCGGGCTGCCGTGCCCCGGCTACGCGCGCATGCACCAGGCCTTCAAGGCCGCCTACGCCGACATGG
CGGCCAAGCACCCCTGCTTCGGCCACGCCTCCGGGATGCCCGACCATCGCTGGTGGAGGACGTGCGTCAGGGACTCCTTC
CTCAGGGTAAGGTGAAGGTCGGTGCTCCGCCGTGCCCTGTTCGTTTCTCCAAGAAACTCCGAAGCGTCAACGGGGGTACA
ATC----TCATGCGTGTAGAATGTGCAACTGCTCTAATCTGATGCTCTTTCGGCC-TTTTTCTCTTGGTTGTTGGTG---
--TGCTGCAGGCAGGACACGAGTACGACGATGCCACATTTGAGCGGATCTTCGGGCAAATCTACGCCGCCTTCGGCTCCC
CCGCCCCGTACTCGGTGTTCCCCGACGCGCGGCCCTTCCTCCGGTGGCTGCGCGGCGAGGGGATCATGGCCGGGGTCGTC
ACCAACGCGGACTGCCGCTACAGGGACGTCGTGCTGCCCGCGCTGGGGCTGAACCAGGTCGGC-----------AGCCGC
CCTCGACCGCCGTCTCGCTCGCGCTGCCGGAAGCCATACATTGCTCAGTTTCGTTTCTGGTTGATGTGTGCAGGGGTCCG
AGTGGGACTTCGGGGTGTTCTCGGGCGTCGCCGGCGTCGAGAAGCCCGACCGGAGGATCTACGAGATGGCGCTGGAGGCG
GCGGGGGGCGTGGCGCCGGAGGAGGCGCTGCACATCGGCGACAGCATGAGCAAGGACTACGCGCCGGCCCGGGCCGTCGG
GATGCACGCGCTGCTGCTGGACAGGTTCGGGACCGCCGACGCCGAGAGGTGGCGGCGGTCCGGCGCGGTGGTGCTCCCTG
ACCTCGTCTCTGCCCGGGAGTGGCTCACCCGGGACCCCCCTGCCGCGCATGGAGGAACCAACAACGCCTGGGCGGAGTAG
TGATTATTCTGAAAAAAATAGGGTGCATAGTTGGGGCACGAGTGACCATTGCTGCAAGTGTATGAAATCCAGGGGACACA
AGAACTGTCTCTTGGATATGATACAGCATTCGTTGATGAGATTACCAACTGTTGTGA-----TGTAAGCAAGAGCGCAAG
TAAAGCAACTTATTCACAATTGATGCGTGATGCCATGATC----------------------------------------
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>chr6B_1
TTACCTTTGCCTGTTAATAGTTTACTGCTGCTCTCCTCCAGTAGGAGGTCCATGCCCATATATGCCTAAATCTAAGCTAC
TTCCCAGGGAACTGCCATTAAGGAAAGAATCCAGGAAAGGCTGAAGGAGGCGCAGTCTAGGGACTTCAGCCTTCTACAAT
ACGACAGTGACGACTTTGACGACTTTGAAGAAGAAGACGATGAAGTTGCCAAAGATGCCAAATACGTGAAAGAATAGCGC
CACTGTAAAATTTTACGTCAAAAGTATAATACAGGCATGCAATGCATGTTAACAGTCTTCGTCAACCACAATCCTTCACC
ATGTATCTGTCCCTTTGATTGTGAGCTTCACTGTCAAGGTAGATCTGCGTGCTGTGTTTGTAGCTGTACTTGATGTTTTT
CTAGGCATTAGCGTACGCTCATGTAAAAGTTCTACTGTGAGGCATAACACTCTTTATTTGGAGGATATCGATTTCAATTC
CAGTTCTTATTAAGAAGACCTTTTCCATTTTGTAATTACACTTGTTTATTTTCCGTTTTTGACATCAAACTCTGAGGTGG
TACTTTTTTTTTCATGTGTGTGGGAAATGATAAACG-TTCATTCTTTGAATAATCGGTGGCTTACTCTACAAATGTTGGA
TTCAGTTTTTTTAAAAAGAAAGTTGTTTGGATTCCCTGCGCCTCGCTGCGGCGTCTTCACCGTTCCTTGAAGAAAACT-T
CGGGAGGAG-------ACTTGGCTCCTAGTAAATGAGTTTTCTTGTGAAGCAAGGAG---------GCTCCCTTTTAAAT
CCCTGCTGCTTGGATTGATCCAAAGAGTTGGCCGTGATCTTTCCTCCCGGGAGTGGGTTAACTCCCTCAAGCCGGAGAGC
CATGGATTCATGCTTGCTTCCACAGAGGTGGTAGCGTCTTCCTCGCTCTCGTTTTGCCCCGCAGAACAAGGCACC-GGTG
CTGTTATAAGTCAACCCAAG-AACCATCCGGTCCTCTTCTTCTATGCCTCCGTGCGTCGCCGGCTGCCATGTCGCTGCTG
TCGAGGCTGCGGCTGGTCACCGTGGACGTGACGGGGACGCTGATCGCCTACAGAGGGCAGCTCGGCGACTACTACTGCAC
GGCGGCCAGGTCCGCCGGGGTGGCGTGCCCCGGCTACGCGCGCATGCACCAGGCCTTCAAGGCCGCCTACGCCGACATGG
CGACCAAGCAGCCCTGCTTCGGCCACGCCTCCAGGATGCCCGACCATCGCTGGTGGAGGACGTGCGTCAGGGACTCCTTC
CTCAGGGTAAGGTGAAGGTCGGTGCTCTGCCGTGCCCTGTTCGTTTCTCCAAGAAACTCCGAAGCGTCGACGGGGAGAGT
AATAATGTCGTGCGTGTAGAATGTGCAACTACTCTATTCTGATGCTCTGGCGGCTTTTTCTCTCTTTGTTGTTGGTATGT
AATGCTGCAGGCAGGACACGAGTACGATGATGCCACATTTGAGGGGATCTTCGGGCAAATCTACGCCGCCTTCGGCTCCC
CCGCCCCGTACTCGGTGTTCCCCGACGCGCGGCCCTTCCTCCGATGGCTGCGCGGCGAGGGGATCATGGCCGGGGTCGTC
ACCAACGCGGACTGCCGCTACAGGGACGTCGTCCTGCCCGCGCTGGGGCTGAACCAGGTCGGC-----------AGCTGC
CCTCGACCGCCGTCTCGCTCGCGCTGCCGGGAGCTATACATTGCTCAGTTCTGTTTCTGATTTATGTGTGCAGGGGTCCG
AGTGGGACTTCGGGGTGTTCTCGGGCGTCGCCGGCGTCGAGAAGCCCGACCGGCGGATCTACGAGATGGCGCTGGAGGCG
GCCGGGGGCGTGGCGCCGGAGGAGGCGCTGCACATCGGCGACAGCATGAGCAAGGACTACGCGCCGGCGCGGGCCGTGGG
GATGCACGCGCTGGTGCTGGACAGGTTCGGGACCGCCGACGCCGAGAGATGGCGGCGGTCCGGCGCGGTGGTGCTCCCTG
ACCTCGTCTCTGCCCGGGAGTGGCTCACCCGGGATCCCCCTGCCGCGCATGGAGGAACCAACAACGCCGGCGCGGAGGAA
TGGCCATTCTG--AAAAATAGGGTGCAGAGTTGGGACATGAGTGGGCATTGCTGCAAGTGTATGAAATCCTGGACACACA
AGAACTGGCTCTTTG--ATGATACAGCATTCATTGATGAGATTGCCAACTGTTGTGA-----TGTGAGCAAGAGCGCAAG
TTAAGCAACTTATTCAGAATTGATGCGCGATGCCATGATC----------------------------------------
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>SNPs
-------S------------------------------------------------------------------------
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-------------------------------------------------------------------------------S
---------------S----------------------------------------------------------------
-------------------S------------------------------------------------------------
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------------------------S--------------------------------S---S-----S------------
--------S-S-----------------------------------------------S---------------------
---------------S------------------------------S--------------S-S--------------S-
---------S------------S-----------------------------------------S---------------
----------------------------------------------------------------------S---------
-----------------------------------------------------------------S-------S-S----
S-------------------------------------------------------------------------------
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-------------------------------------------------------------------------------S
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-------------------------------------------------------------------S-S-S--------
------------------------------------------------S-------------------------------
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---------------------------------------------------------------SSSSSSSSSSS------
--------------------------------------------------------------------S-----------
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------------------------------------S--S----------------------------------------
----------S----------------S-------------------------------S--------------------
------S------------------S-------S-----------S--------S-----------------------S-
-----S--SS--S-------------S-----------------------S---SS-SSSSS------------S-----
----S---S---------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_961
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-------------------------------------------------------------CAGAGCAAGGCATTTGGTG
T-------------------------------------------------------------------------------
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>reverse_2680
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---------------------------------------GTGCGATTGCTCATCTGCAG---------------------
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