>input_sequence_62363
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-------------------------------------------------------------------ATGCC--------
-------------------------------AGCGGGG---------------------------------------AAG
GGTAGGGCCGGCGCG---GGGAAGGCACCGGAGATGGTGACCATGGATCTGCTCGGCGGGTGGGGCGGCCACGCCGGCGG
GGAGGACGAGGTCGTCGACCTGGAGGTCAAGGTGCCCGCCGGCCGGGAGAGACGGCTCGACCTACTGGTGAGTCTCC--C
TCCTAGCATTACTGTTT------CGATCTGCTCCTCTGTTCTTCCGACCACTAGATGGTTTGTTTGTTTCTTCGTGTG--
-GGTAGTTACA----CCTGCGTGCGTGCATGTTTGGTGTTTAATTAATTCGCTCTTGTGTGGTTCCTGTCCGAGATGAAA
TTCCGGAGAACTATAT-AATTTG-------CTACTTAGGTTAGACTATATCCGCAGATCAAATTCATGTTCTTTGATCGG
TCTAACAGCATGATGATCAAAATTTTGTTTCTTTTTTTTTAAAAAAGGAGGATTACCTCCGGCCTCTGCATCAGTCGATG
CATGCAGCCATAAAATTTTGTTTCTGTTGCACTGGGATTACAGAGTTCCTTGTTCATCATACAGAT--------------
-TACTTAACAAGGTGA--AAAAAAAAATATTGTTTTTGTGCAGTCCGGCAAGACGTTCTTGACTCCTCATCGCCACCAGA
CCGCCCAAGACGGCCGCCAGGACCTCAACCTCCCTCCCACGGCATCCACCGCGGCCG---CCGT------CACCACCACC
TCCTCTCCGTTCTGCACCCTCGACATGGTCCGCTACGCCCTAGAGCGCGCCTCCGCCGCGCGGTCCGCC-----------
----ACCTCGCCGGACACGTCGTCCTCCTCGTTGGCGTCCGCCTCATCCTCGTCCTCGTCGCTGGGAAAGCGCAGCCGCT
CGCCGCCTTCAAGCATGGCGTCGCCCGCCGCGAACCCAACCATGCGTGCGTGTGCGTGCCCGTCCTGCTTCACGTACGTG
CTCATCGCCGAGGCCGACCCCTGGTGCCCGCGGTGCGCATCGAAGGTGCCGCCGCTGCCTAGTAAGCCCGCTGCCCACAG
CAGTGGGAAGAAGCCCAGGATTGACCTGAATGCTGACGCCGATGAGACCGAGTGA-------------------------
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>chr2D_1_TraesCS2D01G459700
AGCCCGCCTGAGTTCGAAGCATGAGGCTCGGCAGTGTCTCTCAACTATTTTAAATGTCGACTCGGGGATGATTGTATCCC
CGAGTTTGTTTTTATTTCTGCCCCGCA----TCATATAGTACTCCAAAATCAATTAGACATTAATCGTTGCTATTTAATC
CAATATAAATATATAGTACTCCAGATGCAGTATCCTCGAGTTTGGCTTTTTTTTGCACCACGTAATATAGTACCCTA---
--GAATCGATTAGACATTAATCGTTACGATTTAATCCAATATAAATA-TATA----------------------------
----------------------------------------------------------GTACTCTTTTCTGCACCGCGTC
ATATAGTACTCCAGAATCGTTTAGAC----ATTAATCGTTGCGATATAATCCAATATAAATATATCAATCAATTTTCCTC
CATAAAAATCTCTTTTATTAATTATATAC------GAATTATATCACACGGCAATGTTCAA---TT-GCGAACTAAAATA
TGGATGGGTGGATACT-------------------------------TTGCATCTGTTTTCTAGATGAACAATAAAATGG
CAAACAAATAAATGGAATGTGGATCAATGCACATAAATCCAGCATGATATTTTGCAAAATTAAAATA-------AAAAAT
CCAGCATGATATTGCAGCGGCAGCCCAAGGGTTCTTCCACGATTTAAATTCAGCCCATTCATGTACTAATGGGA-GGAGT
G-AGTAAATGACTACTTTTTAAATGGAAACGAATTCAAATCCCGGCTCTTCGATTCGAGTGGATTAAACACGTCAGCGAC
CCCAAATTTGTTTCCAGCAGTTAATTGGCATTAATAATCTTCCAACCATTTCCCAACGATGGCAATTAATATATGATCCT
TAATGGC-------------CACGCTCGCTGGCACGTGGGCCCTACGTGTCGGTAGCGCCGGCGGCTTCACG--GTATAT
ATAGGGACGCCCCACCACGCACTGCCAAACACCCC--------ACCGATCTGTCATCTCGTCTTCTCTCGGCAGAACGAC
AAAC---AAACACAGAAAAGAGGA-----AGCAGAGGA------CAGCCGAGAAAGGGAAGAGGAGAATGCC--------
-------------------------------AGCGGGG---------------------------------------AAG
GGTAGGGCCGGCGCG---GGGAAGGCACCGGAGATGGTGACCATGGATCTGCTCGGCGGGTGGGGCGGCCACGCCGGCGG
GGAGGACGAGGTCGTCGACCTGGAGGTCAAGGTGCCCGCCGGCCGGGAGAGACGGCTCGACCTACTGGTGAGTCTCC--C
TCCTAGCATTACTGTTT------CGATCTGCTCCTCTGTTCTTCCGACCACTAGATGGTTTGTTTGTTTCTTCGTGTG--
-GGTAGTTACA----CCTGCGTGCGTGCATGTTTGGTGTTTAATTAATTCGCTCTTGTGTGGTTCCTGTCCGAGATGAAA
TTCCGGAGAACTATAT-AATTTG-------CTACTTAGGTTAGACTATATCCGCAGATCAAATTCATGTTCTTTGATCGG
TCTAACAGCATGATGATCAAAATTTTGTTTCTTTTTTTTTAAAAAAGGAGGATTACCTCCGGCCTCTGCATCAGTCGATG
CATGCAGCCATAAAATTTTGTTTCTGTTGCACTGGGATTACAGAGTTCCTTGTTCATCATACAGAT--------------
-TACTTAACAAGGTGA--AAAAAAAAATATTGTTTTTGTGCAGTCCGGCAAGACGTTCTTGACTCCTCATCGCCACCAGA
CCGCCCAAGACGGCCGCCAGGACCTCAACCTCCCTCCCACGGCATCCACCGCGGCCG---CCGT------CACCACCACC
TCCTCTCCGTTCTGCACCCTCGACATGGTCCGCTACGCCCTAGAGCGCGCCTCCGCCGCGCGGTCCGCC-----------
----ACCTCGCCGGACACGTCGTCCTCCTCGTTGGCGTCCGCCTCATCCTCGTCCTCGTCGCTGGGAAAGCGCAGCCGCT
CGCCGCCTTCAAGCATGGCGTCGCCCGCCGCGAACCCAACCATGCGTGCGTGTGCGTGCCCGTCCTGCTTCACGTACGTG
CTCATCGCCGAGGCCGACCCCTGGTGCCCGCGGTGCGCATCGAAGGTGCCGCCGCTGCCTAGTAAGCCCGCTGCCCACAG
CAGTGGGAAGAAGCCCAGGATTGACCTGAATGCTGACGCCGATGAGACCGAGTGAACAAGAAAAGATGAAA-----GACA
AATG----ATTTTTTTTCTTTTTGGAAAAGTTTTTCAGGGGAAGACTTGTGAGATCTCACTTTAGCTGAGATCAATGAGA
TCGATTTTAAAAGATACATGTTTAAACATTCTCAAACCTTTTGTAGACATACATCAATGTTTGATGTTCAACCTAAAAAA
AAATTCAGCTCATAATTCGACTTCCATTACTAGAAAAAAAAAGACAAAAACTCATGTGAATAGTGTCAAAGTACTATTCA
TCCAAAGCTGCCACTATTCACATTCAAATTTATCTTTTTTGAATCTCAAAATGTACATCGAGTTTTGAGCTGATTTTTTC
CGGAGTTGTAGACATACCTCACATGAATGGTGTCAAATAATATCATATTTTT-CGAATGTCTAAATATACATTTTTAGGA
TTGATCTCATGATCACCAAAATGTGATATCTCATACAAGTCTCCCTCAAGTTTTTCAAGTCGTCAATTGGTTGGGGAAAC
GGAAGGAGCAGGGGTAGCTACAGAACACAACGAATTTGGGCCTCATGCCCCGGGCTAGGCCCTGGGGGCCTGGGTCCTAG
ATCCTCCACTGGGAAGGAGCCCT---GCCGGCTGACGATGCATCGCCGCCATGGTAGAGATCCAAGTTGGCTTGGCCATG
AGCTCCCTGTCCTTGCGTACCTATACTCTAATGAATGATTTGTTGCATCACCACCTCCACCTTCATAACACCGGCGGCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCC
TTTGCGGCTGCAAGTGCCCTATTGTTTA
>chr2A_1
AGCCCGCCTAAGTTCGAAGCATGAGGCTTGCTAGTGGCTCTCATTTTTTTTAATGTCAACT--CGGGATGCTAGTATCCG
TGAGTTTGCTTTCCTTTTTTTCTGCACCATGTCATATAGTACTCCAAAATTGATTAGACGTTAATCATTGCGATGTAATC
CAATGTTAATATATAGTACTCCGAATGCAGTATCCCTGAGTTTGCCTTTTTTTTGCACCATGTAATATAGTACTCCATG-
----ATCGATTAGACATTAATCGTTATGATTTAATCCAATATAAATA-TATAGTATACTTTTTTTTGCACCGTGTCATTT
ACTACTCCAGAATCGATTAGACATTAATTGTTGCGATATAATCCAATATAAATATATAGTACTCTTTTGTGCACCGCGTC
ATATAGTACTCCAAAATCGATTAGCTAGGAATTAATCGTTGCGATATAATCCAATATAAATACATCAATTAATTCTCCTC
CAAAAATATCTTTTTCATT-ATTATATAC------GTATTATACGACGCGGCAATGCTCAA---TT-GTGAACTAAAATA
TGGATGGGCGGATACTATTGAATATATGGTACCAATGAATTTAGTGGTTGCATCTATTTTCTTGATGAACAATAAAACAG
CCAACAAAT----------------AATGCACATAAATGCAGCATGATATTTTACAAAA-------A-------AAAAAT
CCAGCATGATATTGCAGCGGCAGCCCAAGGGTTCTTCCACGATTTAAATTCAGCCCATTCAT------------------
------------------------GGAAACGAATTCATATCCCGGCTCTTCGATTCGAGTGAATTAAACACGTCAGCGAC
CCCAAATTTGTTTCGGGTAGTTAATTGGCATTAATAATCTTCCAACCATTTCCCAACGA---CAATTAATATATGATCCT
TAATGGCTCTCCCTACCCTCCACGCTCGCTGGCACGTGGGCCCTACGTGTCGGTCGCGCCGGCAGCTTCATG--GTATAT
ATAGGGGCGCCCCACCACGCACTGCCAAACACCACACGGCCACACCGATCTCTCATCCCGTCTTCTCTCG----------
------------------------------GCAAATGA------CGGCCGAGAAAGGGACGAGGAAAATGACGGG-----
----------------------------------GGGG---------------------------------------AAG
GGTAGGGCCGGCGCG---GGGAAAGCACCGGAGATGGTGACCATGGATCTGCTCGGCGGGTGCGGTGGTGACGCCGGCGG
GGAGGACGAGGTCGTCGAACTGGAGGTCAAGGTGCCCGCCGGCAGGGAGAAACGGCTCGACCTTCTGGTGAGTCTCC--C
TCCTAGCATTGCTGTTT------CGATCTGCTCCTCTGTTCTTCCGATCACTAGATGATTTGTTTGTTTCTTCGTGTG--
-GGTAGTTACA----CCTGCGTGCGTGCATGTTTGGTGTTTAATTAATTCGCTCTCGTGTGGTTCCTGTCCGAGATGATA
TTCCGGAGAACTATAT-ACTTTT-------C----TAGGTTAGATTATATCCGCAGATCAAATTCATGTTCTTTGATCGG
TCTATCAGCATGATGATCAAATTTTTGTTTCT------------------------------------------------
-------------------------GTTGCACTGGGATTACAGAGTTCGTTGTTCATCATACAGATTA------------
GTACTTAACAAGGTGGGGAAAAAAAAATCTTGTTTTTGTGCAGTCGGGCAAGACGTTCTTGACTCCTCATCGCCACCAGG
CCGCCCAAGACGGCCACCAGGACCTCAACCTGCCTCCCACGGCATCAACCACCGCCG---CCGT------CACCACCACC
TCCGCTGCGTTCTGCACCCTCGACATGGTCCGCTGCGCCCTAGAGCGCGCC---------------GCC-----------
----ACATCGCCGGCCACATCGTCCTCCTCGTTGGGGTCCACCTCATCCTCGTCCTCCTCCCTGGGAAAGCGCAGCCGCT
CGCCGCCTTCAAGCACGGCGTCGCCCGCCGCGAACCCGGCCATGCGCGCGTGCGCCTGCCCGTCCTGCTTCACATACGTG
CTCATCACCGAGGCCGCCCCCTGGTGCCCACGGTGTGCATCGAAGGTGCCGCCGCTCCCCAGTAAGCCCGTCGCACGCAG
CAGCGGGAAGAAGCCCATGATTGACTTGAATGCTGACCCCGATGAGACCGAGTGAACAAGATAAG---------------
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>chr2B_2
-GCCCGCCTGGGTTCGAAGCACGAGGCTTGCCCGTGGCTCTCATTTTTCTTAAATGTCGACTCCGGGATGCTAGTATCCC
CGTATTTGG------TTTTTTTTGCACCATGTCATATAGTACTCTAGAATCGATTAGACATTAATAATTGTGATTTAATC
CAATAAAAATATACAGTACTCTG--GATGCAGTATCCTCGACTTTGCCTTTTTTTTCGCACCACATGATA--T-------
----------------TTAATCGTTACGATTTAATCCAATATAAATG-TATA----------------------------
----------------------------------------------------------ATACTCCTTTTGGCACCGCCTA
ATATAGTACTCCAGAATCCATTAGAC----ATTAATCATTGCGATATAATCCAATATAAATATATCAATTAATTTTCCTC
CAAAA-TATCTTTTTCGTTGATTATATAC------GTATTATACGACGCGGCAATGCTCAGTTTTT-GTGACCTAAAATA
TGGATGGGCGGATACTATTGAATAT--GGTACTAATGAATTTAGTGGTTGCATCTGTTTTCTAGATGAACAATAAAACGG
CAAACGAAT----------------AAATGGAATGGATCAATGCACAT----------------------------AAAT
CCAGCATGATATTGCAGCGGCAGCCCAAGGGTTCTTCCACGATTTAAATCCAGCCCATTCATGTACTTATGCGGAG----
G-AGTAAATGACTACTTT--AAACGGAAACGAATTCAAATCCCGGCTCTTCGATTCGAGTGAATTAAACACGTCAGCGAC
CCCAAATTTGTTTCGGGCAGTTAATTGGCATTAATAATCTTCCAACCATTTCCCAACGACGGCAATTAATATATGATCCT
TAATGGCTCTCCCTACCCTCCACGCTCGCTGGCATGTGGGCCCCGGGTGTCGGTCGCGCCGGCGGCCTCCCG--GTATAT
ATAGGGCCGCCCCACCACGCACTGCCAAACATCCC--------ACCGATCTCCGTTTTC----TCCCTCGGCAGAACGAC
AAAC---AAACACAGAAAAGAGGA-----AGCAGAGCAGAGGTCCCGCCGAGAAAGGGAAGAGGAGAATGGCGGCGGAGG
TGAGCTCCATCGCCAGGATGCTCCGCGGGGAGGCCGGG---------------------------------------AAG
GGTAGGGCCGGCGCG---GGGAAGGCGCCGGAGATGGTGACCATGGATCTGCTCGGCGGGTGCGGCAGCGACGCCGGCGG
GCAGGACGAGGTCGTCGACCTCGAGGTCAAGGTGCCCGCCGGCTGGGAGCGACGGCTTGATCTGCTGGTGAGTCCTC--C
TCCTG---TTGTTTCGCCCGTTCGTTTCTCCTCCCCTGTTCTT------------------GTTCGTCTATGTATGAACA
AGTTAGTTACA----CGTGCGTGCGTTCGTGTTTGGTGGTTAATAAATTCGCGCCCGTGTGGTTCCTGTTCGAGATGAAA
TTCTGTAGAATCATATAAATTTC-------C----TAGGTTAGATTATGTCCGCACATCTTC----------TCGATCGG
TTTAAGAGCATGATGATCATTTTTTTTGGTTCTGTTGGATTGA-------------------------------------
------------------------------------ATTACAGAGTTTT-TGTTCTTCATGTTCATAGCCGTCTTTGATC
TTGTTTCAAATTATAACAGAGTGAATTTCTTGTTTTTGTGCAGTCCGGCAAGACGTTCCTGACCCCTCATCGCCACCAGG
CCGCCCAAGACGGCCACCAGGACCTCAACCTGCCTCCCACGGCATCCACCGCTCCGG---CCGCCG---CCGTCACCACA
TGCGCCGCGGTCTGCACCCTCGACATGGTCCGCGACGCCCTGCAGCGCGCCGCTGCCGCGCGGTCAGCC-----------
----CGCTCTCCGGACACTTCGTCCTCGTCGTCTGCGTCCACCTCCTCGTCGTGCCCCTCCCTGGGAAAGCGCAGCCGCT
CGCCTCCTTCAAGCACGGCGTCGCCCCCCGCGAACCCGGCCATGCGCGCGTCCGCGTGCCCGTCCTGCCTCACGTACGTG
CTCATCGCCGAGGCCGACCCCCGGTGCCCGCGGTGCACGTCCAAGGTGCCGCCGCTCCCCACCAAGCCCGCCGCCCACAA
TAGCGGGAAGAAGCCGAAGATTGACCTGAATGCTGCCGCCGATGAGACCGAGTGAATGGGAAAAGATGATA-----GACA
ATTCGA--TTTTTTTTTCTTTCTGGAAAAGTTTTTC--------------------------------------------
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>chr2A_2
-GCCCGCCTGGGTTCGAATCACGAGGCTCGCCCGTGGCTCTCATTTTTCTTAAATGCCGACTGCGGGATGCTAGTATGCC
CGAGTTTGCAT----TTTATTTTGCACCACGACATATAGTACTCTAGAATCGATTAGACATTATTCGTTGCGATTTAATC
CAATATAAATATATAGTACTCTG--GATGCAGTATCCTCAACTTTGCCTTTCTTTT-GCACCAGTAATATAGTAGTACTC
CGGAATCGATTAGACATT-ATCGCTACGATTTAATCCAATATGAATA-TATT----------------------------
-------------------------------------------------------------CTCTTTTTTGCATCGCATA
ATATAGTACTCCGGAATCGATTAGAC----ATTAATCGTAGCGATATAATCCAATATAAATATATCAATTAATTTTCCTC
CAAAA-AATCTTTTTCATTGATTATATAGGAGTATGTATTATACGACGCGGCAATGCTCAATTTTTTGTGACCTAAAATA
TGGATGGGCGGATACTATTGAATAT--GGTACCAATGAATTTAGTGGTTGCATCTGTTTTCTAGATGAACAATAAAACGG
GAAACGATT----------------AAATGGAATGGATCAATGCACAT----------------------------AAAT
CCAGCATGATATTGCAGCGGCAGCCCAAGGGTTCTTCCAGGATTTAAATCCAGCCCATTCATGTACTTATGCGG-G----
GCAGTAAATGACTACTTT--AAACGGAAACGAATTCAAATCCCGGCTCTTCGATTCGAGTGAATTAAACACGTCAGCGAC
CCCAAATTTGTTTCGGGCAGTTAATTGGCATTAATAATCTTCCAACCATTTCCCAACGACGGCCATTAATACATGATCCT
TAATGGCTCTCCCTACCCTCCACGCTCGCTGGCACGTGGGCCCCGCGTGTCCGTCGCGCCGGCGGCCTCCCG--ATATAT
ATAGCGGCGCCCCACCACGCACTGCCAAGCACCCC-------CACCGATCTCTGTTCTC----TCCCTCGGCAGAACGAC
AGAC---AAACACAGAAAAGAGGA-----AGCAGAGGA------CCGCCGAGAAAGGGAAGAGGAGAATGGCGGCGGAGG
TGAGCTCCATCGCCAGGATGCTCCGCGGGGAGGCGGGG---------------------------------------AAG
CGTAGGGCCGGCGCCGCCGGGAAGGCGCCGGAGATGGTGACCATGGATCTGCTCGGCGGGTGCGGCGGCGACGCCGGCGG
GCAGGACGAGGTCGTCGACCTCGAGGTCAAGGTGCCCGCCGGCTGGGAGCGACGGCTTGATCTGCTGGTGAGTCCTC--C
TCGTG---TTGTCTCGCCCATTCGTTTCTCCTCCCCTGTTCTTGCGATCTCAAGATGGTCTGTTCGTCTATGTATGAACA
AGATTGTAACA----CGCGCGTGCGTGCATGGTTGGTGCTTAATCAATTCGCGCCCGTGTGGTTCCTGTCCGAGATGAAA
TTCGA---------------TTG-------C----TGGGTTAGGTTTTGTCGGCAGATCAAATCCATGTTCTTTGATCGG
TTTATGAGCATGACGATCGAATTTTCTGGTTCTGTTGGATTGA-------------------------------------
------------------------------------AGCACAGAGTTTTCTGTTCTTCGTGTTCATACCCGTCTTTGATC
TTGTTTCAAATTATAACAGAGTGAGTTTCTTGTTTTTGTGCAGTCCGGCAAGACGTTCCTGACCCCTCATCGCCACCAGG
CCGCCCAAGACGGGCAGCCGGACCTCAACCTGCCTCCCACGGCGACCACCGCTCCCG---CCGCCG---CCGTCACCACA
TGCGCGGCGGTCTGCACCCTCGACATGGTCCGCGACGCCCTACAGCGCGCC---------------GCCGCCGCGCGGTC
AGCCCGCTCGCCGGACACTTCGTCCTCCTCGTCTGCGTCCACCTCGTCGTCGTGCCCCTCCCTGGGAAAGCGCAGCCGCT
CGCCGCCTTCAAGCACGGCGTCGCCCCCCGCGAACCCGGCCATGCGCGCGTCCGCGTGCCCGTCCTGCCTCACGTACGTG
CTCATCGCCGAGGCCGACCCCCGGTGCCCGCGGTGCGCGTCCAAGGTGCCGCCGCTCCCCACCAAGCCCGCCGCCCACAG
CAGCGGGAAGAAGCCGAAGATTGACCTGAATGCCGCCGCCGATGAAACCGAGTGAATGGGAAAAGATGATACAGTAGACA
ATTGGA--AATTTTTTTCGTTCTGGAAAAAGTTTTT--------------------------------------------
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>chr2D_224
TAGTACTCTAGAATCGATTAGACATTAA----------------------------------------------------
----------------------------------------------------------------TCGTTGCGATTTAATC
CAATATAAATATATAGTATACTCCAGATGCAGTGTCCTCGACTTTGCCTTTTTTTC-GCACCACATAATA--TAGTACTC
CAGAATCAATTAGACATTAATCGTTATGATTTAATCCAATATAAATAATATA----------------------------
----------------------------------------------------------GTACTCCTTTTGGCACCGTGTA
ATATAGTACTCCAGAATCGATTAGAC----ACTAATCGTTGCGATATAATTCAATATAAATATATCAATTAATTTTCGT-
CAAAA-AATCTTTCTCATTCATTATATAC------GTATTATACGACGCGGCAATGCTCAATTTTT-GTGACCTAAAATA
TGGATGGGCGGATACTATTGAATAT--GGCACCAATGAATTTAGTGGTTGCATCTGTTTTCTAGATGAACAATAAAACGG
CAAACGAAT----------------AAATGGAATGGATCAATGCACAT----------------------------AAAT
CCAGCATGATATTGCAGCGGCAGCCCAAGGGTTCTTCCACGATTTAAATCCAGCCCATTCATGTACTTATGCGGAG----
G-AGTAAATGACTACTTT--AAACGGAAACGAATTCAAATCCCGGCTCTTCGATTCGAGTGAATTAAACACGTCAGCGAC
CCCAAATTTGTTTCGGGCAGTTAATTCGCATTAATAATCTTCCAACCATTTCCCAACGACGGCAATTAATATATGATCCT
TAATGGCTCTCCCTACCCTCCACGCTCGCTGGCACGTGGGCCCCGCGTGTCGGTCGCGCCGGCGGCCTCCCGGTATATAT
ATAGCGGCGCCCCACCACGCACTGCCAAACACCCC--------ACCGATCTCTGTTCTC----TCCCTCGGCAGAACGAC
AAAC---AGACACAGAAAAGTGGAAGCAGAGCAGAGGA------CCGCCGAGAAAGGGAAGGGGAGAATGGC--------
-------------------------------GGCGGAGGTGAGCTCCATCGCCAGGATGCTCCGCGGGGAGGCCGGAAAG
GGTAGGGCCGGCGCG---GGGAAGTCGCCGGAGATGGTGACCATGGATCTGCTCGGCGGGTGCGGCGGCGACGCCGGCGG
GCAGGACGAGGTCGTCGACCTCGAGGTCAAGGTGCCCGCCGGCTGGGAGCGACGGCTTGATCTGCTGGTGAGTCCTCTCC
TCCTG---TTGTTTCGCCCGTTCGTTTCTCCTCCCCTGTTCTTGTGATCTCAAGATGCTCTGTTCGTCTACGTATGAACA
AGACGGTTACACGTGCGTGCGTGCGTGCATGTTTGGTGCTTAATCAATTCGCGCCCGTGTGGTTCCTGTCCGAGATGAAA
TTCCGTAGAATCATAT-AATTTG-------C----CTGGTTAGATTATGTCCGCATA------------TCTTCGATCGG
TTTAAGAGCATGATGATCATTTTTTTTGGTTCTGTTGGATTCA-------------------------------------
------------------------------------ATTACAGAGTTTT-CGTTCTTCGTGTTCATACCAGTCTTTTATC
TTGTTTCAAATTATAACAGAGTGAGTTTCTTGTTTTTGTGCAGTCCGGCAAGACGTTCTTGACCCCTCATCGCCACCAGG
CCGCCCAGGGCGGTCAGCAGGACCTCAACCTGCCTCCCACGGCATCCACCGCTCCCG---CCGCCCCCACCACCACCACA
TGCGCCGCGGTCTGCACCCTCGACATGGTCCGCGACGCCCTGCAGCGCGCCGCCGCCGCGCGGTCAGCC-----------
----CGCTTGCCGGACACTTCGTCCTCCTCGTCTGCGTCCACCTCGTCGTCGTGCCCCTCCCTGGGAAAGCGCAGCCGCT
CGCCGCCCTCAAGCACGGCGTCACCCCCCGCGAACCCGGCCATGCGCGCGGCCGCTTGCCCGTCCTGCCTCACGTACGTG
CTCATCGCCGAGGCCGACCCACGGTGCCCGCGGTGCGCGTCCAAGGTGCCGCCGCTCCCCACCAAGCCCGCCGCCCACAG
CAGCGGGAAGAAGCCGAAGATTGACCTGAATGCTGCCGCCGATGACACCGAGTGAATGGGAAAAGATGATACAGTAGACA
ATTGGA--ATTTTTTTTCTTTCTGGAAAAAGTTTTT--------------------------------------------
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>chr2B_289
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----------------------------------------------------------------TTTTCTGCACCGCGTC
ATATAGTACTCCAGAATCGATTAGAC----ATTAATCGTTGCGATATAATCCAATATAAATATATCAGTCAATTTTCCTC
CA-AAAAATCTCTTTCATTAATTATATAC------GAATTATACCATGCGGCAATGCTCAATT----GTGAACTAAAATA
TGGATGGGTGGATAGTATTGAATAT--GGTACTAATGAATTTAGTAGTTGCATCTGTTTTCTATATGAACAATAAGGTGG
CAAACAAATAAATGGAATGTGGATCAATGCACATAAATCCAGCATGATATTTTGCAAAA-------ATAAAATAAAAAAT
CCAGCATGATATTGCAGCGGCAGCCCAAGGGTTCTTCCACGATTTGAATTCAGCGCATTCATGTACTAATGCGA-G----
G-AGTAAATGACTACTTTTTAAACGGAAACGAATTGAGATCCCGGCTCTTCGATTCGAGTGGATT-AAAACGTCAGCCAC
CCCAAAAAAAATTCCAGCAGTTAATTGGCATTAATAATTTCCCAATGACGT------------AATTAATATATGATCCT
TAATGGCTCTCCCTACCCTCCACGCTCGCTGGCACGTGGGCCCCACGTGTCGGTCGCGCCGGCGGCTTCACG--GTATAT
AAAGGGGCGCCCCACCACGCACTGCCAAACACCCC--------ACCGATCTCTCATCTCGTCTTCTCTCGGCAGAACGAC
AAACTAAAAACACAGAAAAGAGGA-----AGCAGAGGA------CCGCCGAGAAAGGGAAGAGGAGAATGAC--------
-------------------------------GGCGGGG---------------------------------------AAG
GGTAGGGCCGGCGCG---GGGAAGGCACCGGAGATGGTGACCATGGATCTGCTCGGCGGGTGGGGCGGCCACGCCGGTGG
GGAGGACGAGGTCGTCGACCT---GGTCAAGGTGCCCGCCGGCTGGGAGAGACGGCTCGACCTGCTGGTGAGTCTCC--C
TCCTAGCATTACTGTTT------CGATCTGCTCCTCTGTTCTTCCGATCACTAGATGGTTTGTTTGTTTCTTCGTGTG--
-GGTAGTTACA----CCTGCATGCGTGCATGTTTGGTGTTTAATTAATTCGCTCTTGTGTGGTTCCTGTCCGAGATGAAA
TTCCGGAGAACTATAT-AATTTG-------C----TAGGTTAGACTATACCGGCAGATCAAATTCATGTTCTTTGATCGG
TCTAACAGCATGATGATCAAAATTTTGTTTCT------------------------------------------------
-------------------------GTTGCACTGGGGTTACAGAGTTCTTTGTTCATCATACAGATTACTTA--------
-----TAACAAGGTG-----AAAAAAATATTGTTTTTGTGCAGTCCGGCAAGACGTTCTTGACTCCTCATCGCCACCAGA
CCGCCCAAGACGGCCGCCAGAACCTCAACCTGCCTCCCACGGCATCCACCGCGGCCG---CCGT------CACCACCACC
TCCTCTGCGTTCTGCACCCTCGACATGGTCCGCTACGCCCTAGAGCGCGCC---------------GCTGCCGCGCGGTC
CGCCACCTCGCTGGACACGTCGTCCTCCTCGTTGGCGTCCGCCTCATCCTCGTCCTCGTCGCTGGGAAAGCGCAGCCGCT
CGCCGCCTTCAAGCACGGCGTCGCCCGCTGCGAACCCGGCCATGAGCGCGTGTGCGTGCCCGTCCTGCTTCACGTACGTG
CTCATCGCCGAGGCCGACCCCTGGTGCCCGCGGTGCGCATCGAAGGTGCCGCTGCTGCCTAGTAAGCCCACTGCCCACAG
CAGCGGGAAGAAGCCCAGGATTGACCTGAATGCTGACGCCGATGAGACCGAGTGAACAAGAAAAGATGAAA-----GACA
AATG----ATTTATTTTCTTTTTGGTAAAGTTTTTCAGGGGAAGACTTGTGAGGTCTCACTTTAGCTAAGATCAATGAGA
CCGATTTTAAAATATACATGTTTAAACATTCTCAAACTTTTTGTAGACATACATCAATGTTTGATGTTCAACCTC-AAAA
AAATTCAGCTCATAATTCGACTTCCATTAATAGAAA--AAAAGACAAAATCTCATGTGAATAGTGTCAAAGTACTATTCA
-CCAAAGCTGCCACTATTCACATTCAAATTTATCTTTTTTGAATCTCAAAATGCACATCGAGTTTTGAACTGATTTTTTC
CGGAGTTGTAGACATACCTCACATGAATGTTGTCAAATAATATCATATTTTTTCGAATGTCTAAATATACATTTTTAGGA
TTGATCTCATGATCACCAAAATGTGAGATCTCATACAAGTCTCCCTCAAGTTTTCCAAGTCGTCAATTGGTTGGGGAAGC
GGAAGGAGCAGGGGTAGCTACAGAACACAAAGAATTTGGGCCTCATGTCCCGGGACAGGCCTCGGGGGCCTGGGTCCTAG
ATCCACCACTGGGAAGGAGCCGGCGCGCCGGCTGACGACACATCGCCGCCATGGCAGAGATCCAAGTCGGCTCGGCCATG
AGCTCCCTGTCATTGCATACCTACTCTGATGAATC--ATTTGTTGCATCAGCACCTCCACCTTCATAACACCGGCAGC--
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>chr2D_1007
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--------------------------------GCGGGG---------------------------------------AAT
GGTAGGGGCGGCGCC---GCGAAGCCGTCCGAGATGGTGACCATGGATCTGCTCGGCGGGTGCGGCGGCGACGCCGGCGT
GGAGAGCGAGGTCGTCGACCTGGAGGCCAAGGTGCCCGCCGGCTGGGAGAGACGGCTCGACCTGCTGGTGAGTCTCC--C
T--------------------TCAGATCTGCTCCTCTGTTCTTCCGCTC---------TTTAGTTGTTTCTTCGTGTG--
-GTTTGTTACA----CCTGCGTGCGCGCATGTTTGGTGCTTAATTAGTTCGCGCTCGTGTGGTTTCTGTCCGAGATAAAA
CTCCGGAGAATTATAT-ACGTACTTTGCTAC----TAGGTTAGATTATGTCCGCAGATCAAACCCATGTTCTTCGATTGA
TTTAACAGCATGATGATCAAAATTTTGGTTAT------------------------------------------------
-------------------------GTTGCACTGAGATTACAGAGTTCTTTGTTCTTTATGTTCATCACACAGATTACGA
GTACTTAACAAGGTGAG----AAAAATTCTTGTTTTTGTGCAGTCCGGCAAGACGTTCTTGACTCCTCATCGCCACCAGG
CCACCCAAGACGGCCACCAGGACCTCAACCTGCCTCCCACGGCATCCACCGCCGCCG---CCGT------CACCAGCACC
TCCGCTGCGTTCTGCACCCTCGACATGGTCCGCTACGCCCTAGAGCGCGCC---------------ACCGCCGTGCGGTC
CGCCACCTCGCCGGACACGTCCTCCTCCTCGTTGGCGTCCACCTCATCCTCGTCCTCCTCGCTGGGAAAGCGCAGCCGCT
CGCCGCCTTCAAACACGGCGTCGCCCGCCGCGAACCCGGCCATGCGCGCGTGTGCGTGCCCGTCCTGCTTCACGTACGTG
CTCATTGCCGAGGCCGACCCCTGGTGCCCGCGGTGCGCGTCGAAGGTGCCGCCGCTCCCCAGTAAGCCCGCTGCCCACAG
CAGCGGGAAGAAGCCTAGGATTGACCTGAATGCTGACGCCGATGAGACCGAGTGAACGCGAAAAGATGATA-----GACA
ATTGGA--AT-TTTTTCCTTTATGGAAAAGTTTT----------------------------------------------
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>chr2B_1007
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--------------------------------GCGGGG---------------------------------------AAT
GGTAGGGGCGGCGCG---GCGAAGACGTCGGAGATGGTGACCATGGATCTGCTCGGCGGGTGCGGCGGCGATGCCGGCGT
GGAGGACGAGGTCGTCGACCTGGAGGTCAAGGTGCCCGCCGGATGGGAGAGACGGCTCGACCTGCTGGTGAGTCTCC--C
TCCTAGTATTACTGTTT------AGAGCTGCTCCTCTGTTCTTCCGATC---------TTTAGTTGT-------------
---TTATTACA----CCTGCGTGCGCGCATGTTTGGTGTTTAATTAATTCGCGCTCGTGTGGTTTCTGTCCGAGATAAAA
TTCCGGAGAATTATGC-AATTTG-------C----TAGGTTAGATTATGTCCGCAGATCAAACCCATGTTCTTCGATTGA
TTTAACAGCATCATGATCAAAATTTTGGTTCT------------------------------------------------
-------------------------GTTGCAGTGAGATTACAGAGTTCTTTATTCTTCATGTTCATTACACAGATTACGA
GTACTTAACAAGGTGA--AAAAAAAAATCTTGTTTTTGTGCAGTCCGGCAAGACGTTCTTGACTCCTCATCGCCACCAGG
CCGCCCAAGACGGCCACCAGGACCTCAACCTGCCTCCCACGGCATCCACCCCCGCCG---CCGT------CACCACCACC
TCCGCTGCGTTTTGCACCCTCGACATGGTCCGCTACGCCCTAGAGCGCGCC---------------GCCGCCGCGCGGTC
CGCCACCTCGCCGGACACGTCGTCCTCCTCGTTGGCGTCCACCTCATCCTCGTCCTCCTCGCTGGGAAAGCGCAGCCGCT
CGCCGCCTTCAAGCACGGGGTCGCCCGCCGCGAACCCGGCCATGCGCGCGTGTGCGTGCCCGTCCTGCTTCACGTACGTG
CTCATTGCCGAGGCCGACCCCTGGTGCCCACGGTGCGCGTCGAAGGTGCCGCCGCTTCCCAGTAAGCCCGCCGCCCACAG
CAGCGGGAAGAAGCCTAGGATTGACCTCAATGCTGACGCCGACGAGACCGAGTGAACGGGAAAAGATGATA-----GACA
ATTGGA--TT-TGTTTCCTTTCTGGAAAAGTTTTT---------------------------------------------
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>chr2A_1007
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--------------------------------GCGGGG---------------------------------------AAT
GGTAGGGGCGGCGCC---GCGAAGCCGTCGGAGATGGTGACCATGGATCTGCTCGGCGGGTGCGGCGGCGACGCCGGCGT
GGAGGATGACGTCGTCGACCTAGAGGTCAAGGTGCCCGCCGGCTGGGAGAGACGGCTCGACCTGCTGGTGAGTCTCC--C
TCCTA---TTATTGTTT------CGATCTGCTCCTCTGTTCTTCCGATC---------TTTAGTTGTT----CGTGTG--
-GTTTGTTACA----CCCGCGTGCGCGCATGTTTGGTGCTTAATTAATTCGCGCTCGTGTTGTTTCTGTGCGAGTAT---
-------------------GTAATTTGCTAG----TAGGTTAGATTATGTCCGCGGATCAAACGCATGTTGTTTGATTGA
TTTAACTGCATGATGATCAAAATTTTGGTTTT------------------------------------------------
-------------------------GTTGCACTGGGATTACAGAGTTCTGTGTTCTTCGTGTTTCATCATACA-----GA
TTACTTAACAAGGTG-----AAATAATTCTTGTTTTTGTGCAGTCCGGCAAGACGTTCTTGACTCCTAATCGCCACCAGG
CCATCCAAGACGGCCACCAGGACCTCAACCTGCCTCCCACGGCATCCACCGCCGCCGTTGCCGT------CACCACCAAC
TCCTCCGCGTTCTGCACCCTCGATATGGTCCGCTGCGCCCTAGAGCGCGCC---------------GCCGCCGCGCGGTC
CGCCACCTCGCCGGACACGTCGTCCTCCTCGTTGGCGTCCACCTCATCCTCGTCCTCCTCGCTGGGAAAGCGCAGCCGCT
CGCCGCCTTCAAGCACGGCGTCGCCCGCCGCGAACCAGGCCATGCGCGCGTGCGCCTGCCCGTCCTGCTTCACGTACGTG
CTCATCGCCGAGGCCGACCCCTGGTGCCCGCGGTGCGCATCGAAGGTGCCGCCGCTCCCCAGTAAGCCCGCCGCCCACAG
CAGCGGGAAGAAGCCTAGGTTTGACCTGAATGCTGACGCCGATGAGACCGAGTGAACGGGGAAAGATGATA-----GACA
TTTGGTTTTT-TTTTTCCTTTCTGGAAAAGTTTTT---------------------------------------------
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>chr2D_1520
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--------------------------------------------------TGTTCATCATACAGATTACTTAACTAGGT-
----------------G----AAAAATTCTTGTTTTTGTGCAGTCCGACAAGACGTTCTTGACTCCTCATCGCCACCAGG
CCACCCAAGATGGCCACCAGGACCTCAACCTGCCTCCCACGACATCCACCGCCGAT---------G---CCATCACCACC
ACCTTCGCGTTCTACACCCTCGACATGGTCCGCAATGCCCTAGAGCGCGCC---------------GCCGCCGCACGTTC
CATCACCTCACTGGACACGTCGTCCTCCTTGTTGGCGTCCACCTCATCCTTGTCCTCCTCCTTGGGAAAGCGTAGCCGCT
CGCTGCCTGGAAGCACGGCGCCACCGACCTCGAACCCGACCATCCGCACGTGCGCGTGCTCGTCCTGCTTCACGCACGTG
CTTATCGCCGAGGCCGAACCCTGGTGCCCGCGGTGTGGATCGAAGGTGCCGCCGCTCCCCAGTACACCCACCGCCCATAA
CAGCGGGAAGAAGCCGAGGATTGACCTGAATGTTGATGCCAATGAGACCGAATGAATAAGAAAAGATGAAA-----GACA
AATG-------TTTTTTATTTTTGGAAAACTTTTT---------------------------------------------
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>chr2B_1529
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---------------------------------------------------------------------------TACGA
GTACTTAACAAGGTGA--AAAAAAAA-TCTTGTTTTTGTGCAGTCCGGCAAGACGTTCTTGACTCCTCATCGCCACCAGG
CCGCCCAAGACGGCCACCAGGACCTCAACCAGCCTCCCACGGCATCCACCCCCGCCG---CCGT------CACCACCACC
TCCGCTGCGTTTTGCACCCTCGACATGGTCCGCTACGCCCTAGAGCGCGCC---------------GCGGCCGCGCGGTC
CGCCACCTCGCCGGACACGTTGTCCTCCTCGTTGGCGTCCACCTCATCATCGTCCTCCTCGCTGGGAAAGCGCAGCCGCT
CGCCGCCTTCAAGCACGGGGTCGCCCGCCGCGAACCCGGCCATGCGCGCGTGTGCGTGCCCGTCCTGCTTCACGTACGTG
CTCATTGCCGAGGCCGACCCCTGGTGCCCACGGTGCGCGTCGAAGGTGCCGCCGCTTCCCAGTAAGCCCGCCGCCCACAG
CAGCGGGAAGAAGCCTAGGATTGACCTCAATGCTGACGCCGACGAGACCGAGTGAACGGGAAAAGATGATA-----GACA
ATTGGA--CT-TGTTTCCTTTCTGGAAAAGTTTTT---------------------------------------------
--------------------------------------------------------------------------------
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----------------------------
>SNPs
------------------------------S-----S------SS-S----------------S------S-S-------
--------S---SS---S-SS-SSSSS------------------------S-------------------S--------
----------------------SS-----------S--------S----------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--S------------S---------------------------S---S--------S-----------S-----------
--------------------------------------------------------------------------------
-----------------------------------------------------------SSSSSSS--------------
-----------------------------------------------------------------------S----SSSS
-----------------------S--------------------------------------------------------
-----------------------------------------------------------S--------------------
------------------------------------------------------S-------------------------
------S--------------------------------------------S----------------------------
---------------------------------------------S------------------------S---------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S-------------------S----------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-------------------------------SSSS---------------------------------------------
---------------------------------S--SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S-------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
------S--------------------------------------------S-------------S--------------
--------------------------------------------------------------------------------
---------------S---------------------S--------S---------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-----------------------------------------------------S-------------S------------
S-----------S------------------------S------------------------------------SS----
-----------------------------S------SS-----------S------------------------------
S----------------------------------------------------S--------------S-----------
-----------------------------S--------------------------------------------------
--------------------------S---------------------------S-----------------------S-
------------------------------S----------------S------SS-----SS-----------------
----S----------------SS---------------SS--------------S------------S----S-------
-----------S----S------SS--SSSSSSSSSS-------------S------------------------S--SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1092
--------------------------------------------------------------------------------
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--------------------------------CCAAACACCCCACCGATCTG----------------------------
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>reverse_2879
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------AC
GGAAGGAGCAGGGGTAG---------------------------------------------------------------
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----------------------------
