>input_sequence_62354
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--------ATGCCCAATGCACCCAAAATCTTCAGCCGCAAGCAATGGCAGATCCTTGGAGCAGTTTTAATTCACAGTTCA
CAAGAGATCATCGGAAACTACTGCTTGCCAAACGACAAGGGACAAACTTTGAGCACTCCCAAGGACGTGAATATACTCAA
GCCAATAAGAAAATGCCGAGGGATCAGAGTACTATATGGCCTGCAAGTACAGATGCGGCATTCCATGCGCGGGAGATACG
TGCCACAAGGTCGGGCTTTGACCAATGAGGTGTCGAATGTCACTATAAATCCGCCCTCTCAGTGTCCTGCTTTTCTCCTT
CCCTTTCCTGTTCGTTAGTTGCACGACCGACATACTCGACGAACAGGGCCACGGTTAGTTATGCAGCCGTTGAACTGCGT
AAGCTTCTTGCTTGGGGTGGCCGTCCTATCGGCCACCCTTGAGCCCT---TCGTCGCCATTGCGCACAGAGGTAT-ACAC
CGATGCTCCTGAGTGTTCATGCCAGAGCTATAT--GGCCTTTCATTCGACTGCTCTTTTCTTTCTTATAGTTCACACTGG
CACAGGCATGCTCTTCTGTGATTTTGAACAAAACTCTGACATGCTTACTCTTTGTTCTCAGAGTTGCCGACGGCAACTGA
CAGCGAGAGAGGACCGGAAACCAGGCTGGTAAGTACTGCAAGGGGTTGTCAAAAACTTGTAGGTATTTCGATGAAATGCA
CTATCCGCCGGGGATAATGTCTAACTAAAGTTAGTCTTGATATGCAGGAGCCCACCGTTGACAGAACCATAACAGATGAG
GGAACCAGAAGCAATGCACTGACAAGAGGAAAGATGGTTCTTGGAGATGCAGCCATGGAGAAGACGGATGATAGAAGCAC
AGCAAGCTCAGGTGCAAAACATCCTGTTGGACAATGTGGGCATGGAGGAGGGAAGGATTTGAGTATGGACTGTTATTTTA
GGGGTAGGAAACTTCATCCAGGGGCTTACTTCGATGGCCACATACCCTTCACCGCTGATTACCGTAGACCACGGAACCAC
CCGCCCAAGAACAACTAG--------------------------------------------------------------
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>chr7D_1_TraesCS7D01G386700
CGTCCAGAACCAGGGACGCGCCGAGAAAGAAAAGCGAGAAGCGACGGGCCCGCCTGCCCGCTCGGCTCGGAGGTCGCGCC
CTCGTGCTCCGGCCGCTCCCAGTGCGCGCAAATGATGCCGTCGCCGGAGCCCGACGCGGCGTTGCACGTGCTAGCAGCTC
GCATGGTAAACGCAAGAGCTGCCTTTTGCTGCTGGCGTACGTGTGCGTTCTGAAGTCGCCTGACTGCTGCTTCTCCACAA
CAAATTCGAATGTACG-----------------------------TATACCTATTTTTGGTAGGT--TCAGCGAATAGGC
AAACGGAAAGAACTTCGGTTCCATGAACCTCTCGGCCAAGTGTGAATCGCGAGGACGTACACGAGCACAGCTGGCACAGC
CTGAAGTCCCAGGAGACCGAGTTGACCGTCTCCAAGAACGCATTCCGGGGCCAGTGCCTGTTCCCCAAAGCACCAGTACC
AAAGCTCTCATTCGGCATCTCGCTCGTGCTTTAAGAGCCAT----------CAGCAGCTGAAAAGAGGAACCGTCAAGTT
AGTCCACGCTCGAAAGCCGAATCAGTGTACCGAGTACCGACCAAACCCATCCAACTGCAAGTCTGCAACAGTTGACGCTC
GAAAGTCGAATCATGTGCTTC-TCCACCTCTGAAAACTGACCAAATTCAGCCGACTGCGAATGGTTTTGCCGCCGACGAG
CGTTCACTCCTAAGCTCCTGAAATTCAATGGCACCGACAACGGCGGTGGTGTAACACAGGTGTGTGTGCGATCTTGCGTG
CGCGCCCGTCTGATTCGCGCCCGCCACCGGTTGTTTGCGGTCATCGTCTGGGAGTCTGATGTGTAAACATCGTCTGGGAG
TCTGATAAGTAAACATCGTCTGGGAGTACGTGTTGAGAACCA----GAACCATTACTTTAGATCAAATGGAGGAGAGGTC
GAAGCCCTAGGTTCTGGCCTTGGTCACCGAAATCCTTTCTAGTTGGCCACTACACTTTGCTTGTTGCATGCATCCACGCG
--GGCAGAATGCCCAATGCACCCAAAATCTTCAGCCGCAAGCAATGGCAGATCCTTGGAGCAGTTTTAATTCACAGTTCA
CAAGAGATCATCGGAAACTACTGCTTGCCAAACGACAAGGGACAAACTTTGAGCACTCCCAAGGACGTGAATATACTCAA
GCCAATAAGAAAATGCCGAGGGATCAGAGTACTATATGGCCTGCAAGTACAGATGCGGCATTCCATGCGCGGGAGATACG
TGCCACAAGGTCGGGCTTTGACCAATGAGGTGTCGAATGTCACTATAAATCCGCCCTCTCAGTGTCCTGCTTTTCTCCTT
CCCTTTCCTGTTCGTTAGTTGCACGACCGACATACTCGACGAACAGGGCCACGGTTAGTTATGCAGCCGTTGAACTGCGT
AAGCTTCTTGCTTGGGGTGGCCGTCCTATCGGCCACCCTTGAGCCCT---TCGTCGCCATTGCGCACAGAGGTAT-ACAC
CGATGCTCCTGAGTGTTCATGCCAGAGCTATAT--GGCCTTTCATTCGACTGCTCTTTTCTTTCTTATAGTTCACACTGG
CACAGGCATGCTCTTCTGTGATTTTGAACAAAACTCTGACATGCTTACTCTTTGTTCTCAGAGTTGCCGACGGCAACTGA
CAGCGAGAGAGGACCGGAAACCAGGCTGGTAAGTACTGCAAGGGGTTGTCAAAAACTTGTAGGTATTTCGATGAAATGCA
CTATCCGCCGGGGATAATGTCTAACTAAAGTTAGTCTTGATATGCAGGAGCCCACCGTTGACAGAACCATAACAGATGAG
GGAACCAGAAGCAATGCACTGACAAGAGGAAAGATGGTTCTTGGAGATGCAGCCATGGAGAAGACGGATGATAGAAGCAC
AGCAAGCTCAGGTGCAAAACATCCTGTTGGACAATGTGGGCATGGAGGAGGGAAGGATTTGAGTATGGACTGTTATTTTA
GGGGTAGGAAACTTCATCCAGGGGCTTACTTCGATGGCCACATACCCTTCACCGCTGATTACCGTAGACCACGGAACCAC
CCGCCCAAGAACAACTAGTGGTGGATAGGGTATAGGTAGCTTGTTTCCCTTACCTTTTTTCTTTTTCTTTTGGCTGGCCA
TTCTATTTGTCAGATATGGCCTTCCTTCTTGTTAGATATAGGTGTTTAGTGGTGTTGTGTTTCTCCTGTGTCATAATATA
GTAATATCAGTGCTTTTACTTTAGAAAGGGTGAAGCTTATGTTGCCAGCTTTTAATTTC---ACAGAAGTCATTCTCAGC
AACGAAATGGAAGAATTCATGAACTGACACACTAACATTTTCTGCTGGATTTGA-TATTCCCTCGTTCTCAATAATGCAG
GAGATAGAAAAAAA---CACCAATAGCGGTTGAGATGGATAAAGGTAGGTATGAGTG------TGAAATTTGTCC-----
-----------------------------------AATTCCACTTCCACATTCACAAGGAAATATACATAGCAGTCAACG
TGTGTCAGAATCGAGGTGGATTCAGTGGAGGCTGGCCAGGGAGACTCTCCCCGCCACAACACGGTGGCAC-------CCC
GCCGGTCTCCTACAGTGACTTCGGTAGGAGGCAGCAGGAGGCTACTTTGCCCGGCGTCGTCGAGGTGAACAGATATGCTC
ACTATTTTTTGAGGAAACCCAACGAGGCCAATTGGTTTGAAGTTCCAAGTATTATTCTGTAGTCATCCGTGGCGTAGCGC
GAGCTCGGGCGAAAAATGCCTGTACGGGTGCGGGTGACCGGACCGGCTACAGGCACCGGGGGCTCCTGGGGCGCCGGGGG
GCCACGGGCGCCAACGTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGGCGTTGAGGATCCTGTGTCACCG
GTGACGGGAGGAACAGCCGGGGGTACCTGTTAAAACAG
>chr7A_1
CGTCCAGGACCAGGGACGCGCCGAGAA------GCGAGAAGCGACGGGCCCGCCCGCCCACTCGGCTAGGAGGTCGCGCC
CTCGTGCTCCGGCCACTCCCAGTGCGCGCAAATGATGCCGTCGCCGGAGCCCGACGCGGCGTTGCACGTGCTAGCAGCTC
ACACGGTAAACGCAAGAGCTGCCTTTTGCTGCTGGCGTACGAGTGCGTTCCGAAGTCGCCTGACTGCTGCTTCTCCACAA
AAGCTTCCAGCAGAATGGACAGTAAACCTGTCTCGCCTGAGAGATTATACATATTTTTGGTAGGT--TCAGCGAAAAGGC
GAACGGA-AGAAATTCAGTTCCATGGACCTCTCGGCCAAGTGTGAATCGTGAGGACGCACACGGGCGCATCTGGTACAGC
TTGAAGCCCCAGGAGACCGAGTTGACTGTCTCCAAGAACGCATTCCGGGCCCAGCGCCTGTTCCCCAAAGCAGCAGTACC
GAAGCTCTCATTCGGCATCTTGCTCGTGCTTTAAGAGCCATCGGCAATGGCCAGCAGCTGAAAAGAGGAACCGTCAAGTC
AGTCGACGCTCGAAAGCCGAATCAATGTACCGG-------CCAAACCCAACCAA--------CTGCAACAGTTGACGCTC
GAAAGTCTAA------------TCCACCTCTGAAAACTGACCAAATTCAACCGACTGCGAACGGTTTTGCCGACGACGAG
CGTTCACTCCTAAGCTCCTGAAATTCAATGGCACCGACAACGGCGGTGGTGTAACACTG--GTGCGTGTGATCTTGCATG
CGCGGCCGTCTGATTCACGCTCGCCACCGGTTGTTTTTGGTCATCGTCTGGGACTCTGATGC------------------
--------GTAAATATGGTTTGAAGGTACGTGTTGGGAGAACACGGGAACCATTACTATAGATCAATTGGAGGTGAGGTC
GAAGCCCTAGGTTCTGGCCTTGGTCACCGAAATCCTTTCTAGTTGGCCACTACACTTTGCTCGTTGCATGCATCCAT--G
--GGCAGAATGCCCAATGCACCCAAAATCTTCAGCCGCAAGCAATGGCAGATCCTTGGAGCAGTTTTAATTCACAGTTCA
CAAGAGATCATCGGAAACTACTGCTTGCCAAACGGCAAGGGACAAACTTTGAGCACTTCCAAGGACGTGAATATACTCAA
GCCAATAAGAAAATGCCGAGGGATCAGACTACTATATGGCCTGCAAGTACAGATGCGGCATTCCACGCGCAGGAGATACG
TGCCACAAGGTCGGGCTTTGACCAATGAGGTGTCGAATGTCCCTATAAATCCACCCTCTCAGCGTCCTGCTTCTCTCCTT
CCCTTTCCTGTTCGTTAGTTACACGACCGACATACTCGACGAACAGGGCCACGGTTAGTTATGCAGCCGTTGAGCTGTGC
AAGCTTCTTGCTTGGGGTGGCCGTCCTATCGGCCACCCTTGAGCCCT---TCGTCGCCATTGCGCACAGAGGTAT-ACAC
CGGTGCTTCTGAGTGTTCATGCTAGAGCTATATAAGGCCTTTCATCCGACTGCTCTTTTCTTTCTTATAGTTCACACTGG
CACAGGCATGATCATTTATGATTTTGAACAAAACTCTGACATGCTTACTCTTTGTTCTCAGAGTTGCTGACGGCAACCGA
CAGCGTGAGAGGACCGGAAACCAGGCTGGTAAGTACTGCAAGGGGTTGTCAAAAACTTATAGGTGTTTCGATGAAATGCA
CTATCCGCCGGGGATAATGTATAACTAAAGTTAGTCTTGATATGCAGGAGCCCACTGTCGACAAAACCATCACAGACGAG
GGAAGCAGAAGCAATGCACTGACAAGAGGAGAGATGGTTCTTGGAGATGCAGCCATGGAGAAGACGGATGATAGAAGCAC
GTCAAGCTCAGCTGCAAAACATTCTGTTGGACAATGTGGGCATGGAGGAGGGAAGGATCTGAGTATGGACTGTTATTTTA
GGAGCAGGAAACTTCATCCAGGGGCTTACTTCGATGGCCACATACCCTTCACCGCTGATTACCGTAGACCACGGAACCAC
CCGCCCAAGAACAACTAGGAGTGGGTAGGGTATAGCTAGCTTGTTTCCCTTGCCTTTTTTCTTTTTCTTTTGGCTGGCCA
TTCTATTTGTCAGATATGGCCTTCCTTCTTGTTAGATATAGGTGTTTAGTGACGTTGTGTTTCTCCTGTGGCATA--ATA
GTAATATCAGTGCTTTTACTTTAGAAAGGGTGAAGCTTATGTTGGCAGCTTTTAATTTCCTAACAGAAATCATTCTCAGC
AACGAAATGGAAGAATTCATGAACTGACACACTAACATTTTCTGATGGATTTGAATATTCCCTCGTTCTAAATAATGCAC
GAGATAGAAAAAAA-AACACGATTAGCGGTTGAGATGGATAAAGGTAGGTATGAATGAGACTCTGAAATTTGTCCAATTT
GAATTGATCGATCTCAGTTTATTCCCTCAGCATGAAATTCCACCTCCACATTCACAAGGAACTATACATAGCAGCCAACG
TGTGTCAAAATTGAGGTGGATTCAGTGGAGGCTGGCCAGGGAGACTCTCCCCGCCACAACACGGTGGCACCCCGCCGCCC
GCCGGTCTCCTACATTGACTTCGGTAGGAGGCGGCAGGAGGCTACTTTGCCCGGCGCCGTCGAGGTGAACAGATATGCTC
ACTATTTTTTGAGGAAACCCAACGAGGCCAATTGGTTTGAAGCTCCAAGTATTGTTCTGT--------------------
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>chr7B_1
CGTCCAGAACCGGGGACGCGCCGAGAA------GCGAGAAGCGACGGGTCCGCCCGC----TCGGCTCGGAGGTCGCGCC
CTCGTGCTCCGGCCACTCCCGGTGCGCGCGAATGATGCCGTCGCCGGAGCCCGACGCGGCTTTGCACGTGTTAGCAGCTC
ACACGGTAAACGCAAGAGCTGCCTTTTTGCTGCTGC---CGTGTGCGTTCTGAGGTCGCCTGACTGCTGCTTCTCCACAA
AAGCTTCCAGCAGAATGGACTGTAGACCTGTCTCGCCTGAGCGATTATACATATTTTTGGTAGTAGGTCAGCGAAAAGGC
AAACGGAAAGAACTTCAGTTCCATGAACATCTCGGCCAAGTGTGAATCGCGATGACGTACACGAGCACAGCTGGTACAGC
TTGAAGTCCCAGGAGACCGAGTTGACTGTCTCCAAGAATGCATTCCGGGCCTAGTGCCTGTTCCCCAAAGCACCAGTACC
AAAGCTCTCATTCGGCATCTTGCTCGTGCTTTAAGAGCCACCGGCAATGGCCAGCAGCTGAAAAGAGGAACCGTCAAGTC
AGTCGACGCTCAAAAGCCGAATCATGGTACCGG-------CCAAACCCAACCAA--------CTGCAACAGTTGACGCTC
GAAAGTCGAATCATGTGCTTTTTCCACCTCTGAAAACTGACCAAATTCAGTCGACTGCGACTGGTTTTGCCGACGACGAG
CGTTCACTCCTAAGCTCCTGAGATTCAATGGCACCGACAGCGGCGGTG----------------CGTGTGATCTTGCGTG
CGCGGCCGTCTGGTTCACAATCGCCACCGGCTGTTTGCGGTCATCGTCTGGGAGTCTGATGTA-----------------
---------TAAATATGGTTTGAAGGTACGTGTTGAGAACCA----GAACCATTACTTTAGAGCAAATGGAGGTGAGGTC
GAAGCCCTAGGTTCTGGCCTTGGTCACCGAAATCCTTTCTAGTTGGCCACTACACTTTGCTTGTTGCATGCATCCAT--G
CGGGCAGAATGCCCGATGCGCCCAAAATCTTCAGCCGCAAGCAACGGCAGATCCTTGGAGCAGTTTTAATTCACAGTTCA
CAAGAGATCATTGGAAACTACTGCTTGCCAAACGACAAGGGACAAACTTTGAGCACTTCCAAGGACGTGAATATACTCGA
GCCAATAAGAAAATGCCGAGGGATCAGAGTACTATATGGTCCGCAAGTACAGATGCGGCATTCCACGCGCAGGAGATACG
TGCCACAAGGTCGTGCTTTGACCAATGAGGTGTCGAATGTCCCTATAAATCCACCCTCACAGTGTCCTGCTTTTCTCCTT
CCCTTTCCTGTTCGTTAGTTACACGACCGACATACTCGACGAACAGGGCCACGGTTAGTTATGCAGCCGTTGAACTGCGT
AAGCTTCTTGCTTGGGGTGGCCGTCCTATCGGCCACCCTTGAGCCCTTCGTCGTCGCCATTGCGCACAGAGGTATTACAC
CGCTGCTTCCGAGTGTTCATACTAGAGCTATAA--GGCCTTTCATCCGACTGTTCTTTTCTTTCTTATAGTTCAAACTGG
CACAGGCATGCCCTTCTATGATTTTGAACAAAACTCTGACATGCTTACTCTTTGTTCTCAGAGTTGCTGACGGCAACCGA
CAGCGTGAGAGGATCGGAAACCAGGCTGGTAAGTACTGCAAGGGGTTGTCAAAAACTTACCAGCCTGGGACG--------
----------------ATGTCTAACTAAAGTTAGCCTTGGTATGCAGGAGCCCACTGTTGACAAAACCATCACAGATGAG
GGAATCAGAAGCAATGTACTGACAAGAGGAAAGATGGTTCTTGGAGATGCAGCCATGGAGAAGACGGATGGTAGAAGCAC
AGCAAGCTCAGGTGCAAAACATTCTGTTGGACAATGTGGGCATGGAGGAGGGAAGGATTTGAGTATGGACTGTTATTTTA
GGGGTAGGAAACTTCATCAAGGGGCTTACTTCGATGGCCACATACCCTTCACCGCTGATTACCGTAGACCACGGAACCAC
CCGCCCAAGAACAACTAGGCGTGGATAGGGTATAGCTAGCTTGTTTCCATTACCTTTTTCC-TTTTCGTTTGGCTGGCCT
TTCTATTTGTCAGATATGGCCTTCCTTCTTGTTAGATATAGGTGTTTAGTGATGTTGTGTTTCTCCTGTGTCATA--ATA
GTAATATCAGTGTTTTTACTTCAGAAAGGGTGAAGCTTATGTTGCCAGCTTTTAATTTC---ACAGAGGTCATTCTCAGC
AATGAAATGGAAAAATTCATGAATTGATACACTAACATTTTCTGATGGATTTGAATATTCCCTCGTTCTCAATAATGCAG
GAGATAGAAAAAAACAACACCAATAGCGGTTGAGATGGATAAAGGTAGGTATGAGTGAAACTCTGAAATTTGTCCAATTT
GAATCGATCGATCTCAGTTAATCCTTCGGT-ATGAAATTCCACCTCCACATTCACAAGGAAATATACAT-----------
-GTGTCAAAATCGAGGTGGATTCAGTGGAGGCTGGCCAGGGAGACTCTCCCGGCCACAAT--GGTGGCAC-------CCT
GCCGGTCTCCTACAGTGACTTCGGTAGGAGGCGGCAGGAGGCTACTTTGCCCG-CGCCGTCGAGGTGAACGGATATGCTC
ACTATTTTTTGAGGAAACCCAACGAGTCCAATTGGGTTGAAGTTCCAAGCATT---------------------------
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>SNPs
---------------------------SSSSSS---------------------S----S--------------------
--------------S-----------------------------------------------------------------
S--S----------------------------------------------------------------------------
S-SS---S-SSSS-SS----------------------------------S------------------------S----
----------------S---------------------------------------------------------S-----
S-------------------------S----------------------S------------------------------
--------------------S----------------------------------------------------------S
----S-------------------S-------SSSSSSSS---------S----SSSSSSSS------------------
--------------------S---------------------------------------------------S-------
---------------------------------------------------------S-SS---S---S-----------
----S-----------S---S-----------------------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSS-----S--S--S--SSS------------------------------------------------S------
----------------------------------------------------------------------------SSS-
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---------------------------------------------------------S----------------------
-----------------------------------------------------------------S----S---------
-----------------------------------------S----------S---------------------------
--------------------S-----------------------------------------------------------
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--S----S--------------S----------------------S----------------------------------
-----------------S-------------------------------------------------S---------S--
-----S----------------------------------------------------S-----S---------------
-------------------------------------------------------S-------S------S---------
----S---------------------------------------------------------------------------
----------------------S---------------------------------------------------------
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------------------SS---------------S--------------------------------------------
---------------------------------------------------S-----------------------SS---
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--------------------------------------------S-----------------------------------
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-------------------------------------------S------------------------------S-----
-------S------------------------------------------------------------------------
--------------------------------S-----------------------S-----------------------
-----------------------------------------------------S------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_619
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---------------------------------------ACCAAACCCATCCAACTGCA---------------------
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>reverse_1943
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----------------------CCTGTTGGACAATGTGGGCA--------------------------------------
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>forward_1816
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------------------------------------TTGATATGCAGGAGCCCACC------------------------
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>reverse_3098
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---------------------------------------------------------GCGTTGAGGATCCTGTGTCA---
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