>input_sequence_62349
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-------------------------------------------------------------------------------C
TATAAATACACGGCCAGGGGCTAGAGGTCAATACTACACTACTCCGATCCTTCTCTCCTAGCTAGCTGCCACACCACAGT
ACGTAGTACGTTCTAGCCTCTTCTCCACTTAATAGCTGTTATGGAACAGACGAATGTCAGGTTGCCCCAGCTGGCCAAGA
TAGCAGCGCTCCTCCTCCTCTTCCTCCTCGTCCCCATGGTGCCTCCTTCTCTGAGGGCCCCTTATCTCTACCTCCTCTTC
AACGCCCTCGTCGTCGGCCTTGGTCTCCAGGCCGGCATCATCTCGGTCTCAAGCCGGAGCAACTTAACAGCCCAGCCTCC
TGCCC------CTGC---TGCTGCTGTAACTCCCAACCACCATCACCACCTTGTCACTTCACAGCCGCCGATCATGGCGG
CCCCCTTGCCAGGACGACTCAGGGAGGTAAATCTGCTTGCAGATCGCGGTGCTGTCAACAACGTCGTGGCCGTGGCCAAG
AAACTGAAGGAGACGATCAAGAAAGTCCCGTCCAGGGCGAGCATCTTCTTCATCGGGAGCGTGGACCCCCACGACGCCGG
CGAGGTCGTGGACGCGACGTCAAAGACGCTCCACGACAA---------GGAAGGGCGGAAAAGGTGCAAGGTAGACGCCT
CCTCCGGGGATCTCATGAGCAAGCAGGAACTTTACGCCAAGGCCGACGCCTTCATCGGCAACTTCTACAAGCAGCTCAAG
ATGCAGAGGGAGGAGTCCTGGAACAAGCTGCAGGACCTGTGCAGCTACCACCACCACCACAACTACAAGGCCAAGGCCTT
CTAGAGATTCTCGATCTA--CGTACGTATCTAGAGTCTAGATGCATGGCTAGCATC-TATATAT--TTGCATGCATGCAT
ATGCAGACACGCTG--TGTGCGTGTGTGTTGGTACGTAGGGTAACTTT--------GCTGAGCAGTGGAAGGAGCCGAGA
GGAACCAACAGATATTATGTTGTTTGGTTCCT-CATTCTTAA-TTACCTTCATCGACCCATTGATTTGTTTTGGGTTAGA
AGATCATAGGAGTCCTTTCCCCTGAAGTATATATATGA------------------------------------------
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--
>chr7B_1_TraesCS7B01G357300
CGTCGCCCGATCGGAAAGAG-TACTATTCCTACCACCAGTGCCATGTCGATCTTTTGTTCGTAGGTCACATGGCATCTGT
TCACGTCGCCATTGATGCAACAACGCAAAAGCTTAGCATTTCGCTCTCAGATCCTACGCAAAAAACCACCTCGAGCTTAT
CTTCTCCCACCCTTCGTTCTCTGCTATAGTCCCTCTGTTCACAAATATAAGATGTTTTAAATATTTCAATATAGACTATC
TACGGACTGAAATGAGTGAACAACACATAAAATGACATAAAATGTGTTTATACACATTCAATTTAGAAAAA-GGTTACTA
GAACATCTTATATTTGTGAACAAGAGTGGGGCGTTTTGGTGACCGGATTCCATGGAGCCCGGAATTTTTGT-AAATTCAA
AATTCAAACCTTTTGTTTTCAGAAAAA---------------------TCTAAAAATAT--ATTCAAGTATACAAGGATG
AAATGTATATGTGTGTAAAAATTCAGGATGAAATACCTTGACATGCTACCTGTAAAAAAATAAATTCATTGAGTATCATA
TATTTTTTTTAGAAAAGGAGGAAGACCCCCGGCCTCTGCATCTGGGCGATGCATACAACCATTTTATTAATTATTAACAC
AAAACCTTACAAAGTCATACAACAATAAGACTAAAATCATCGTCTAAGCAACATCTGTCGCTACTCCTATCCATTTGATG
AAGGGCGCTGATAGTCTGAGCGTAATATCAAACGGACCTCGCAGCCAAACCTAACATCTAAGACCTGAGGAAATTGAGTA
TCATATGTTAAAATGTATCTGATTTTTTAACAGCCTCATTTCAATGTATTTCGTTCTAAAAATTTACACATA-TGTATAT
TATGCCTTCATTTATATCTGTATTTTTCAGTT----------AACGTAAAAATATGAAATTTAAAAAATGCAAATGGACG
CTTCCCTGGAGCTCGGCCTCCAAAAGCAATTTTCGTGTGAAC--GGAGGGTAGCTAGCTACCCACCACGGTCGTGCAGTC
TATAAATACACGGCCAGGGGCTAGAGGTCAATACTACACTACTCCGATCCTTCTCTCCTAGCTAGCTGCCACACCACAGT
ACGTAGTACGTTCTAGCCTCTTCTCCACTTAATAGCTGTTATGGAACAGACGAATGTCAGGTTGCCCCAGCTGGCCAAGA
TAGCAGCGCTCCTCCTCCTCTTCCTCCTCGTCCCCATGGTGCCTCCTTCTCTGAGGGCCCCTTATCTCTACCTCCTCTTC
AACGCCCTCGTCGTCGGCCTTGGTCTCCAGGCCGGCATCATCTCGGTCTCAAGCCGGAGCAACTTAACAGCCCAGCCTCC
TGCCC------CTGC---TGCTGCTGTAACTCCCAACCACCATCACCACCTTGTCACTTCACAGCCGCCGATCATGGCGG
CCCCCTTGCCAGGACGACTCAGGGAGGTAAATCTGCTTGCAGATCGCGGTGCTGTCAACAACGTCGTGGCCGTGGCCAAG
AAACTGAAGGAGACGATCAAGAAAGTCCCGTCCAGGGCGAGCATCTTCTTCATCGGGAGCGTGGACCCCCACGACGCCGG
CGAGGTCGTGGACGCGACGTCAAAGACGCTCCACGACAA---------GGAAGGGCGGAAAAGGTGCAAGGTAGACGCCT
CCTCCGGGGATCTCATGAGCAAGCAGGAACTTTACGCCAAGGCCGACGCCTTCATCGGCAACTTCTACAAGCAGCTCAAG
ATGCAGAGGGAGGAGTCCTGGAACAAGCTGCAGGACCTGTGCAGCTACCACCACCACCACAACTACAAGGCCAAGGCCTT
CTAGAGATTCTCGATCTA--CGTACGTATCTAGAGTCTAGATGCATGGCTAGCATC-TATATAT--TTGCATGCATGCAT
ATGCAGACACGCTG--TGTGCGTGTGTGTTGGTACGTAGGGTAACTTT--------GCTGAGCAGTGGAAGGAGCCGAGA
GGAACCAACAGATATTATGTTGTTTGGTTCCT-CATTCTTAA-TTACCTTCATCGACCCATTGATTTGTTTTGGGTTAGA
AGATCATAGGAGTCCTTTCCCCTGAAGTATATATATGAATAATCGCATATACACATCTTCTTAACTTATATGGGT---TA
TTTGCAAGTCACCTGAATTTCTC-TTTCGTGTAAGTCATTGTTCTTTTCACTCCGTGCTACTAGTTTTTTTCTCTCTATC
TACATGCAAGCTTACATAACCTTTTTACAGTTTTGCTAGAACTCATCTAGATGAGATATAATTTGGTCTCATTCATTTTT
TATAGCCATTGGATGTGATGCTATAAGATGCGTGTGTGCTGACGTGGTTTGTATTTGTTCTTGTTTTTAAAGTGAATGAG
ACCAAATTATATCTCATCTAGATGAGTTCTAGGTACTCCCTCACCTTTTTAACCGTGCATACTTACCGTCTCCAGAAAAG
CTAATACTCCCTTGTCCACTAATGTTAGTTAACGTATACAGACGTTCGCTTGACTGAAATTGCAGTGTGCATGCATAAAG
AGTATTTAAGTAGTACCCTCACACTGTATAAGCAGCGGTCAGGAAGTCATCGATGTATACCAGAAAATGCCGGCGACCAC
GATCTGGAGAGATCGCCGTCCCGGAGGAGCTAGTACCGAGATGATCTATTCATTAATTTAGTCCATATTTTATGTGAGAT
GATCTATTCTCATATTGTTATTGGTGTACTAGGAAAAGTGCTCATGCGTTGCAACATGATATAAAATTAACAAAAAATAT
GCTTACAAACCTGACCAACTATTTACCACTGAAACAACTTTTGCATGCTCTCACGAATACCAAGGGTTGTTCTTAAAAGG
CGAACCAACCTGTGGTTGGATGGTTAAAGGGACCGTGGTATCCCTAGCCCATCAGGGTTTAAATCCTGGTGCTCGCATTT
ATTCCTGGATTTATTTCAGGATTTCCGGCGATGCGCATTCAGTGGGAGGAGACGTTCCCGTCGATGACGAGGCGCCTATG
GTGACTTCATAAATTTCAAGATAATATGTCGGCTCAGTCTTTCGGAGGTGCTCATAGGAGTAGGGTGTCCGTGTGTGTGT
TT
>chr7D_1
CGTCGCCCGATCGGAAAGAGCTACTATTCCTACCTCCAGTGCCATGTCGATCTTTTGGGCGTAGCTCACATGGCATCTGT
TCATGTCGCCGTTGATGCAACGACGCAAAAGCTTAGCATTTCGCTCTCAGATCCGACGTAAGAAACCACCTCGAGCTTAT
CTTCTCCGACCCTTCGTTGTCTAC--TAGTCCCTCCGTTCACAAATATAAGATGTTTTAGATATGGTAATATGGGCTACA
TATATACTGAAATGAATGAACGACAT----------ATAAAATATGTTTATACACATCCGATTTAGAAAAAAGGTTAGCA
GAACATCTTATATTTGTGAAGAGGAGTGGGGCGTTTTGGTGACCAGGCGACATGGAGCCCGAAATTTTTGAAAAATTCAA
AATTCAAACTTTTTGATTTCAGAAAAAATCTAAAAATAATTGAAAAAATCTAAAAATATGCATTCAAGTGTACAAGGATG
AAATGTATATGTGTGTAAAAATTCACGATGAAATAACTTGACATGCGACCTGTAAAAAAACAAATTCATGGACTTTGAGA
ATGAATAGCTAA--------------------------------------------------------------------
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------------------------------------------------------------------------------TA
TCATATGTTGATAGGTCCCAGATTTTTTAACAACCTCATTTCAATGTATTCCGTTCAGAAAATTTACACA-CGTGTATAT
TATGCCTCCATTTATATTTGTATCTTTTCAATTATTTTATAAAACATAAAAATATGAAATTTAAAAATTGCAAATGGAGG
CCTCTCCGAAGCTCGGCCTCCAAAATCAATTTTCATGTGAACGCGGAGGCTAGCTAGCTACCCACCACGGTCGTGCAGTC
TATAAATACACGGCCAGGGACTAGAGGCCAATACTACACTACTCCGATCCTTCTCTCCTAGCTAGCTGCCATACCACAGC
ACGTAGTACGTTCTAGCCTCTTCTCCACTTAATAGCTGTTATGGAACAGACGAATGTCAGGTTGCCCCAGCTGGCCAAGA
TAGCAGCGCTCCTCCTCCTCTTCCTCCTCGTCCCCATGGTGCCTCCTTCTCTGAGGGCCCCTTATCTCTACCTCCTCTTC
AACGCCCTCGTCGTCGGCCTTGGTGTCCAGGCCGGCATCATCTCCGTCTCAAGCCGGAGCAACTTAACAGCCCAGCCTCC
TGCCCCTGCCCCTGC---TGCTGCTGTAACTCCCAACCACCATCACCACCTTGTCACTTCACAGCCGCCGATCATGGCGG
CCCCCTTGCCAGGACGACTCAGGGAGGTAAATCTGCTTGCAGATCGTGGTGCTGTCAACAACGTCGTGGCCGTGGCCAAG
AAACTGAAGGAGACGATCAAGAAAGTCCCGTCCAGGGCGAGCATCTTCTTCATCGGGAGCCTGGACCCCCATGACGCCGG
CGAGGTCGTGGACGCGACGTCAAAGACGCTCCACGACAA---------GGAAGGGCGGCAAAGGTGCAAGGTAGACGCCT
CCTCCGGGGATCTCATGAGCAAGCAGGAACTTTACGCCAAGGCCGACGCCTTCATCGGCAACTTCTACAAGCAGCTCAAG
ATGCAGAGGGAGGAGTCATGGAACAAGCTGCAGGACCTGTGCAGCTACCACCACCACCACAACTACAAGGCCAAGGCCTT
CTAGAGATTCTCGATCCATGTACGTATATCTAGAGTCTAGATGCATGGCTAGCATC-TATATATATGTACGTGCATGCAT
ATGCATGCAGATAAACTGTGCATGTTTGTTGGCACGTAGGGTATACTGAGGACTGAGCTGAGCAGTGGAAGGAGCCCAGA
GGAACCAACAGATATTACGTTGTTTGGTTCCT-CATTCTTAATTTACCTTCATCGACCCATTGATTTGTTTTGGGTTAGA
AGATCATAGGAGTCCTTTCCCCTGAAGTATATATATGGACAGTCG--TATACACATGTTCTTAACTATATGGCTCGTCTA
TTGGTAAGTCACCTGAGTTTTCTATTTGGTGTAAGTCATTTTTCTTTTCACTCCGTGCTACTAC-TTTTTTCTCTATCTA
CACATGCAAGCTGGCATAACGTTTTT------------------------------------------------------
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--
>chr7A_773
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------------------------------------------------------------------------------TA
TCATATGTTGAAAGGTCCTACATTTTTTAACAACCTCATTTCAATGTATCTCATCCAGAAAATTTACACATCGTGTATAT
TATGCCTCCATTTATATCTGTATTTTTTCAATTGTTTTTTAAAACCTAAAAATATGAAATTTAAAAATTGCAAATGGAGG
CCACCCCGAAGCTCGGCCTCCAAAAGCAATTTTCGTGTGAACGGAGGG--TAGCTAGCTACCCACCACGGTCGTGTAGTC
TATAAATACACGGCCA---ACTAGAGGCCAATACTACACTACTCCGATCCTTCTCTCCTAGCTAGCTGCCATACCACAGC
ACGTAGTACGTTCTAGCCTCTTCTCCAACTAATAGGTGCTATGGAAAAAACGAATGTCAGGTTGCCCCAGCTGGCTAAGA
TAGCCGCGCTCCTCCTCCTCTTCATCCTCGTACCCATGGTGCCTCCTTCTCTGAGGGCCCCTTATCTCTACCTCCTCTTC
AACGCCCTCGTCGTCGCCCTTGGCGTCGAGGCCGGTTTCCTCTCCGTCTCAACCGGGACCAAGCTAACAGGCCAGCCTCC
TGCCG------CTGCCGCTGCTGCTGTAATTCCCAACCACCATCACCACCTTGTCACTTCACAGCCGCCGATCATGGCGG
CACCCTTGCCAGGACGACTTAGGGAGGTAAATCTGCTTGCAGATCGCGGTGCTATCAATGAGGTGCTGAGCGTGGCGAAG
AAACTGAAGGAGGAGATCAAGAAAGTCCCGTCCAGGGCGAGCATCTTCTTCATCGGGAGCGCGGACCCCCACGACGCCGG
CGAGATCGTCGATGCGACGTC---GACGCTCCAAGACAATCAGGCGGGGGAAGGGCGGAAAAGGTGCAAGGTAGACGCCT
CCTCCCATGATCTCATGAGCAAGCAGGAACTTTACGCGAAGGCCGACGCGTTCATCGGCAACTTCTACAAGCAGCTCAAG
ATGCAGAGGGAGGAGTCGTGGAACAAGCTGCAGGACCTGTGCAGCTACCACCACCACCACAACTACAAGGCCAAGGCCTT
CTAGAGATTCTCGATCTATACGTACGTATCTAGAGTCTAGATGCATGGTAGCATCTATATATAT--GTGCATGCATGCAT
GTGCAGATACGCTG--TT----TGTGTGTTGGTACGTAGGGTAACTTT--------GCTGAGCAGTGGAAGGAGCCGAGA
GGAACCAACAGATATTATGTTGTTTGGTTCTCACATTCTTAA-TTACCTTCATCGACCCATTGATTTGTTTTGGGTTAGA
AGATCATAGGAGTCCTTTCCCCTGAAGTATATATATGGACAGTCG--TATACACATGTTCTTAACTATATGGCTCGTCTA
TTTGTAAGTCACCTGAATTTTCTATTTGGTATAAGTCATTTTTCTTTTCCCTCCGTGCTACTAC-TTTTTTCTCTATCTA
CACATGCAAGCTTGCATGACGCTTTT------------------------------------------------------
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--
>SNPs
----------------------------------S----------------------SS-----S---------------
---S------S----------S--------------------------------S---S--S------------------
-------S----------S---S-SS---------S-----------------------S----SSS-----S-S---SS
--SSS----------S-----S---SSSSSSSSSSS-------S-------------S-S-----------------SS-
--------------------S-S---------------------S-SSSS-----------S--------S---------
---------S-----S-----------------------------------------------------S----------
-------------------------S---------S----------S-------------S--------S--S-S-S-S-
SSSSS-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
---------S---S--SS-S------------S-----------------------SS-------------S--------
-------S-------------------SSSS--------------S---------------------S----------S-
-S----S-S----------------------------------------S------------------------------
-------------------S-------S-------------------------------------------S-------S
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------------------------S-------------------S-----------------------------------
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-----------------S--------------------------------------------------------------
------------------------------------------------------------------S-------------
---------------------S----------------------------------------------------------
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-------------------------------------S-S-S---SS---------S---------SSSSS-SSS-----
----S---------------SSS----S------------S----------------------SS----------S-S-S
S------------S------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_729
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---------------------------------------------------------------------TCCATTTGATG
AAGGGCGCT-----------------------------------------------------------------------
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--
>reverse_2595
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----------------------------------GCGGTCAGGAAGTCATCGAT--------------------------
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--
