>input_sequence_62345
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--------------------------------------------------------------ATGACCAGCCTCCTTGAC
ATGTACGCCGCGGCCGGGCAGCTCGCGGATGCCAGGAAGGTGTTCGACGAAATGCCCGACAGGA------CGGCGGCGGC
GTGGAACTGCATGCTTTCTGCTTACGTGCGGTGCCGTGAGGTGGATGCGGCTCTGCGTTTCTTCGGTGAGATGCCTGGGA
GGGACGCGGTGGCCTGGACGACGGTGATAGCTGGGTGTGCCGGTGCTGGGAGGGCCGCGGAGGCGGTTGATCTGTTCTGG
AGCATGAGGAAGGCAAGGGTCAAGGATGACTCGGTGACGATGGTTGCCTTGCTGACAGCGTGTGCCGAGTTGGGGGACCT
GCGTCTCGGGCGATGGATACATGCACGGGTGGACCAGGAAGGCCATTTGCAGAGGACGGTGTCGCTAGACAATGCCCTCA
TCCATATGTATGTGAAGTGTGGGGCTGTGGAGGACGCGCACGGCATGTTTCTCGAGATGCCGAGGCGGAGTACCGTCTCA
TGGACCACAATGATTTCCGGGCTCGCTGTCCATGGTCGTGCCGAGGAGGCTCTAGAATTGTTTAACAGGATGGAGGAACG
TCCTGATGGCACAACGCTGCTCGCTGTGCTGTCTGCTTGCAGCCATTCAGGGAAGGTTGACGACGGACGGCAATACTTTG
AGAGCATGGAGAGAGTTTATGGGATTGCCCCAGAGATACAACACTATGGATGCATGGTTGACATGCTCTGCCGCAGCAGA
CGATTGCACGAAGCACTCGAGCTCGCGGAGACAATGCCATTGCAATCTAATGAGGCCGTGTGGGGTGCACTATTGAGTGG
ATGCAAGAGGGAAGATAATCTTGAACTTGCAGCCAAAGTAATTGATAGATTGACTGAGCTACAGCCTGATCGAGCAGCTG
GGCACCTTGTGCTCCTATCAAACATGTATGCGGGTGTTGGTCAGTGGGAGCAGGCTCGGATTGTGAGGGAAAGAGTGGCT
GCACTGCATGCCGGGAAGCCTGCTGGAGGGAGCTGGGTGAATCAAAACGAGACCAGCATGTTGGTAGCATGA--------
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>chr5B_1_TraesCS5B01G228700
GCTAGGCAACAATGTCAAAATTATCAATAAGCTGAATATAAGGCTGAGACGATTATGATAGATATGAAATTAACACCAAT
GACTTATGACTTGGTTCATGTCAGGACGTCAGGTCCTTCAGCTTCTTTAGAGCTAGCACTTGAAGATTGTAATGGTCACG
ATGGTTGAGTAATACAAGTTTTTACCTGGAAATAAACACCCATGACAAAGTCACTTGTTCTGCAACAACACCAGAGCGAG
GGTTTTTCGCTGCAACACCATTTTTCTTTTTTGAGGGGCGCTGCAACACCAGTTGAGCTGCGATCTGCAAACCGCGCG--
---CGACCCATTTTCGCCCCATCAGAAGCAAATCGAAGCTGCGGCAGAAAACCATTCCCGCGCAGAAGCAGAAAAACACA
-CCAAGCCAGACGAACAGGCGGAGCCAAAGCCA----ACCATGGCTAGCGAAGCCCCTCGTCCTCCTCGTCCTCCTCCGC
C---CCTCCCACCCAACCTGCCACCTCACACCCCCTACTCCCGCGCGCTGCAGCAGCGCCTCTACCTCCTCGCGCAGCAC
GCCCGCCGCCGCCGCGGTCTCCACCCGGGCAC---------CGCCACCTCCCTCCGCGCGCTCGACCAGCTCCACGCGCA
GCTCCTCCTCAACGGCTTCCACCGCAAGCGCTTCCTCCTCGCCAAGCTCATCTCCCTCGCCGCCGCCGCCGCCGACCTCC
CCCGCGCCGAGGCCCTCTTCCTCTCCTCGACCTCGTCCTCCCCGCAGCACCCGCCCGCGCCCGAGCCCCCCACCCTCGCC
AACCTCCTCCTCCGCGCCGCCGCGGCGTCCCGCGCGCGGCCTCGCCAGCTCCTCTCCCTCTTCTCCCGCCTCGTCGGCCT
CCACGGGTTCCGCCCCAACGCCTTCTCCTTCTCCACGCTCTTCGCCGCCCTCTCCGGCGCGGGCGCGGGCGCGGCCCCCC
ACGGGGCCGCCCTCCACGCGAGCGCGCTCGCCGGCGGGTTCGCGCTGTCCAACTCGCACGTCATGACCAGCCTCCTTGAC
ATGTACGCCGCGGCCGGGCAGCTCGCGGATGCCAGGAAGGTGTTCGACGAAATGCCCGACAGGA------CGGCGGCGGC
GTGGAACTGCATGCTTTCTGCTTACGTGCGGTGCCGTGAGGTGGATGCGGCTCTGCGTTTCTTCGGTGAGATGCCTGGGA
GGGACGCGGTGGCCTGGACGACGGTGATAGCTGGGTGTGCCGGTGCTGGGAGGGCCGCGGAGGCGGTTGATCTGTTCTGG
AGCATGAGGAAGGCAAGGGTCAAGGATGACTCGGTGACGATGGTTGCCTTGCTGACAGCGTGTGCCGAGTTGGGGGACCT
GCGTCTCGGGCGATGGATACATGCACGGGTGGACCAGGAAGGCCATTTGCAGAGGACGGTGTCGCTAGACAATGCCCTCA
TCCATATGTATGTGAAGTGTGGGGCTGTGGAGGACGCGCACGGCATGTTTCTCGAGATGCCGAGGCGGAGTACCGTCTCA
TGGACCACAATGATTTCCGGGCTCGCTGTCCATGGTCGTGCCGAGGAGGCTCTAGAATTGTTTAACAGGATGGAGGAACG
TCCTGATGGCACAACGCTGCTCGCTGTGCTGTCTGCTTGCAGCCATTCAGGGAAGGTTGACGACGGACGGCAATACTTTG
AGAGCATGGAGAGAGTTTATGGGATTGCCCCAGAGATACAACACTATGGATGCATGGTTGACATGCTCTGCCGCAGCAGA
CGATTGCACGAAGCACTCGAGCTCGCGGAGACAATGCCATTGCAATCTAATGAGGCCGTGTGGGGTGCACTATTGAGTGG
ATGCAAGAGGGAAGATAATCTTGAACTTGCAGCCAAAGTAATTGATAGATTGACTGAGCTACAGCCTGATCGAGCAGCTG
GGCACCTTGTGCTCCTATCAAACATGTATGCGGGTGTTGGTCAGTGGGAGCAGGCTCGGATTGTGAGGGAAAGAGTGGCT
GCACTGCATGCCGGGAAGCCTGCTGGAGGGAGCTGGGTGAATCAAAACGAGACCAGCATGTTGGTAGCATGAGCTCAACA
AATTGTTTGGTTTCACTCACAAAATTTCACATGAAACATTGGGGCTTTGTGTTCCACATTTAAATT-CAGTAATTATCAG
AACTCAAGGGAGCACTGCAA--CGTTTCAACCATCCGGTGTTTGCATTGACGTTTATATTGACACAGTAATAGAAAAAAG
TTCAGATCTAGAGAAGATAAAATGATCAGTCTGCCACACACTTTCTTTTGACTTCTGGTGCAACTGTGGAATTATGCATC
AGTTTCCATCTTCGCTGCGTCGAGGTTAGAACATGATACATTTGACTTGCTATTAATGGTTCTAAACTTCTGTTTGCGCT
ACTTGCCAGATAATAAGTTAATAACAATGCTAGAAATATGTATAGCTCCGTAAATTAT---AGTTGTAATGATGAGGTCT
TTGAAGCGTAAACTTCTCTGTCCATCTTAATTCATTTTTGTAGGAAAAAGTGTCATGACAGCCCAGCCTGCTGTCACAGT
AATAATTAAACACCAATTGAAAATCATAGCAGAACTACATGCACAAGCT-ACCTAGTTCGTCTCATTTTCCTTGCTAAAT
CTTTCTGAGAGATACGAAAGCAGTCTTCTGTTCTCAATTTGAACAATGCTCC----------TCTATGTAACCTATTCTG
TACACTGTTTTTTTATATCGGCAAGTTGATAGTTGCTGAATCTAACTCCTCCTGGATAAACTGAAATCAACTATTCGTTG
ATAGCAGCAGGGTTGGTTCCAGTGTCACCCGAGAAGCTTATTGCATGTGCCAATGCCAATAGCAGCAGCAAGATGCCATG
CAGCATGGATATAGGGTGTCTCTGGGAAGTAATCGTCGGCAATAAACAGCGCACCTCCCAAAAGAGATGACATCTTGTGC
AGGTTATGTACCGTTCTGAGCTCTGGTTCAACTGATGCTCTCTTTGCGAAGGAAACCTGCCATGCCATGTAAACAGTTAG
ATTTATCCAGCAGTTTTCTTTCAGCAAGCCAGTTTGTTGATCATTGAAT
>chr5A_226
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-----------------------------------------------------------------CAACACCAGAGCGAG
GGTTTTT-------------------------------CGCTGCAAAACCAGTTGAGCTGCGATCTGCAAACCGCGCGAG
GCGCGACCCATTTTCGCCCCATCGGAAGCAAATCGACGGTGCGGCAGAAAACCATTCCCGCGCAGAAAACACACCACCAA
GCCAAGTCAGACGCAGAGGCGGAGCCAAAGCCAGCCGACCATGTCTAGCCAAGCCCCTCGTCGTCGTCGTCCTCCTCCTC
CTCCTCTCCCACCCAACCTGCCCCCTCACATCCCCTACTCCCGCGCGCTGCAGCAGCGCCTCTACCTCCTCGCGCAGCAC
GCCCGCCG------------CCGCCCGGGCGC---------CACCGCCTCCCTCCGCGCGCTCGACCAGCTCCACGCGCA
GCTCCTCCTCAACGGCTTCCACCGCAAGCGCTTCCTCCTCGCCAAGCTCATCTCCCTCGCCGCCGCCGCCGCCGACCTCC
CCTGCGCTGAGGCCCTCTTCCTCTCCTCCTCCTCCTCC---CCGCAGCACCCT------CCCGAGCCCCCCACCCTCGCC
AACCTCCTCCTCCGCGCCGCCGCGGCGTCCCGCGCGGGGCCTCCCCAGCTCCTCTCCCTCTTCTCCCGCCTCGTCGGCCG
CCACGGGTTCCGCCCCAACGCCTTCTCCTTCTCCACGCTCTTCGCCGCGCTCTCCGGCGCAGGCGCGGCCGCGGCCCCCC
ACGGAGCCGCCCTCCACGCGACCGCGCTCGCCGGCGGGTTCGCTCTGTCCAGCTCGCACGTCATGACCAGCCTCCTTGAC
ATGTACGCCGCGGCCGGGCAGCTCGCGGATGCCAGGAAGGTGTTCGACGAAATGCCCGGCAGGACGGCGGCGGCGGCGGC
GTGGAACTGCATGCTCTCTGCTTACGTGCGGTGCCGTGAGGTGGACGCGGCTCTGCGTTTCTTCGGTGAGATGCCTGGGA
GGGACGCGGTGGCCTGGACGACGGTGATAGCTGGGTGTGCCAGTGCTGGGAGGGCGGCGGAGGCGGTTGATCTGTTCTGG
AGCATGAGGAAGGCAAGGGTCAAGGACGACTCGGTGACGATGGTCGCCTTGTTGACGGCGTGCGCGGAGTTGGGGGACCT
GCGTCTCGGGCGATGGATACATGCGCGAGTGGACCAGGAAGGCCATTTGCAGCGGACGGTGTCGCTAGACAATGCCCTCA
TCCATATGTATGTGAAGTGTGGGGCTGTGGAGGATGCGCACCGCATGTTTCTCGAGATGCCGAGGCGGAGTACCATCTCA
TGGACTACAATGATTTCCGGGCTTGCGGTCCATGGTCGTGCCGAGGAGGCTCTAGAATTGTTTAACCGGATGGAGGAACG
TCCTGATGGCACAACGCTGCTCGCTGTGCTGTCTGCGTGCAGCCATTCACGGCAGGTTGACGACGGACGGCAATACTTTG
AGAGCATGGAAAGAGTTTATGGGATCGCCCCAGAGATCCAGCACTATGGATGCATGGTCGACATGCTCTGCCGCAGCAGA
CGATTGCACGAAGCACTTGAGCTCGCAGAGACAATGCCGTTGCAGTCTAATGAGGCCGTGTGGGGTGCACTATTGAGTGG
ATGCAAGAGGGAAGATAATCTTGAGCTTGCAGCCAAAGTAATTGATAGATTGACTGAGCTACAGCCTGATCGAGCAGCTG
GGCACCTTGTCCTCCTGTCAAACATGTATGCGGGTGTTGGTCGGTGGGAGCAGGCTCGGATTGTGAGGGAAAGAGTGGCT
GCACTGCATGCCGGGAAGCCTGCTGGAGGGAGCTGGGTGAATCAAAACGAGACCAGCATGTTGATAGCATGATCTCAACA
AATTGTCTAGTTTCACTCACAAAATTTCACATGAAACATTGGGGCTTTGTGTTCCACATTTAAAATGCAGTAATTATCAG
AACTCGAGGGAGCACATTGGGGCGTTGCAACCATCAGGTGTTTGCATTGACGTTTATATTGACACAGTAATAGAAAAAAG
TTCAGATCTAGAGAAGATGAAATGATCAGTCTGCCACACACTTTCTTTTGACTTTTGGTGCAACTGTGGAATTATGCACC
AGTTTCCATCTTCGCTGTTTCAAGGTTAGAACATGATACATTTGACTTGCTATTAATGGTTCTAAACTTCTGTTTGCGGT
ACTTGCCAGATAATAAGTTAATAACAATGCTAGAAATATGTATAGATCCGTCAATTATTATAGTTGTAATGATGAGGTCT
TTGAAGCGTAAACTTCTCTGTCCACCTTAATTCATTTTTGTAGGAAAGAGTGTCATGACAGCCCACCCCGCTCTCGCAGT
AATAATTAAACACCAATGCAAAATCATAGCAGAACTACATGCACAAGCTGACCTAGTTCGTCTCATTTTCCTTGCTAAAT
CTTTCTGAGAGATACGAAAGCATTCTTCTGGTATCAATTTGAACAATGCTCCTGTTCTCTCTTCTATGTAACCTATTCTG
TACACCGTTTTTT-ATATCGGCAAGTTGATAGTTGCTGAATCTAACTCCTTCTGGATAAATTGAAATCAGCTATTCGTTG
ATAGCAGCAGGGTTGGTTCCAGTGTCACCCGAGAAGCTTATTGCATGTGCCAATGCCAATAGCAGCAGCAAGATGCCATG
CAGCATGGATATAGGGGGTCTCTGGGAAGTAATCGTCGGCAATAAACAGCGCACCTCCCAAAAGAGATGACATCTTGTGC
AGGTTATGTACGGTTCTGAGCTCTGGTTCAACTGATGCTCTCTTTGCGAAGGAAACC-----TGCCATTTAAACAGTTTG
ATTTATCCAACAGTTTTCTTTCAACAA----------------------
>chr5D_279
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--------------------------------------CGCTGCAAAACCAGTTGAGCTGCGATCTGCAAACCGCGCG--
-----ACACATTTTCGCCCCATGGGAAGCAAATCGAAGCTGCGGCAGAAAACCATTCCCGCGGAGAAGCAGGAAACACGC
C---------ACGCAGAGGCGGAGCCAAAGCCA----ACCATGTCTAGCCAAGCCCCTCGTCGTC------CTCCTCCTC
CTCGCCTCCCACCCAACCTGCCCCCTCACGTCCCCTACTCCCGCGCGCTGCAGCAGCGCCTCTACCTCCTCGCGCAGCAC
GCCGGCCG------------CCGCCGCCTCCACCCGGCCGGCGCCACCTCCCTCCGCGCGCTCGACCAGCTCCACGCGCA
GCTCCTCCTCAACGGCTTCCACCGCAAGCGCTTCCTCCTCGCCAAGCTCATCTCCCTCGCCGCCGCCGCCGCCGACCTCC
CCCGCGCCGAGGCCCTCTTCCTCTCCTCCTCCTCCTCCTCCTCCT---------------------CCCCCACCCTCGCC
AACCTCCTCCTCCGCGCCGCGGCGGCTTCCCGCGCGCGGCCTCGCCAGCTCCTCTCCCTCTTCTCCCGCCTCGTCGGCCG
CCACGGGTTCCGCCCCAACGCCTTCTCCTTCTCCACGCTCTTCGCCGCGCTCTCCGGCGCGGGCGCGGTCGCGGCCCCCC
ACGGAGGCGCCCTCCACGCGAGCGCGCTCGCCGGCGGGTTCGCGCCGTCCAGCTCGCACGTCATGACCAGCCTCCTTGAC
ATGTACGGCGCGGCCGGGCAGCTCGTGGATGCCAGGAAGGTGTTCGACGAAATGCGGGACAGGACC------GCGGCCGC
GTGGAACTGCATGCTTTCTGCTTACGTGCGGTGCCGTGAGGTGGATGTGGCTCTGCGTTTCTTCGGTGAGATGCCTGGGA
GGGACGCGGTGGCCTGGACGACGGTGATAGCTGGGTGTGCCAGTGCTGGGAGGGCGGCGGAGGCGGTTGATCTGTTCTGG
AGCATGAGGAAGGCAAGGGTCAAGGATGACTCGGTGACGATGGTTGCCTTGCTGACGGCGTGTGCGGAGTTGGGGGACCT
GCGTCTCGGGCGATGGGTACATGCACGGGTGGACCAGGAAGGCCATTTGCAGCGGACGGTGTCGCTAGACAATGCCCTCA
TCCATATGTATGTCAAGTGTGGGGCTGTGGAGGATGCGCACCGCATGTTTCTCGGGATGCCGAGGCGGAGTACCATCTCA
TGGACTACAATGATTTCCGGGCTCGCGGTCCATGGTCGTGCCGAGGAGGCTCTAGAGTTGTTTAACAGGATGGAGGAACG
TCCTGATGGCACGACACTGCTCGCTGTGCTGTCTGCGTGCAGCCATTCAGGGAAGGTTGGCGACGGACGGCAATACTTTG
AGAGCATGGAAAGAGTTTATGGGATCGCCCCAGAGATACAGCATTATGGATGCATGGTCGACATGCTCTGCCGCAGCAGA
CGATTGCATGAAGCACTCGAGCTCGCGGAGGCAATGCCATTGCAATCTAATGAGGCCGTGTGGGGTGCACTATTGAGTGG
ATGCAAGAGGGAAGATAATCTTGAGCTTGCAGCCAAAGTAATTGATAGATTGACTGAGCTACAGCCTGATCGAGCAGCTG
GGCACCTTGTGCTCCTGTCAAACATGTATGCGGGTGTTGGTCAGTGGGAGCAGGCTCGGATTGTGAGGGAAAGAGTGGCT
GCACTGCATGCCGGGAAGCCTGCTGGAGGGAGCTGGGTTAATCAAAACGAGACCAGCATGTTGGTAGCATGAGCTCAACA
AATTGTTTGGTTTCACTCACAAAATTTCACATGAAACATTGGGGCTTTGTGTTCCACATTTAAAATGCAGTAATTATCAC
AACTGGAGGGAGCACTGCAA--CGTTGCAACCATCAGGTGTTTGCATTGACGTTTATATTGACACAGTAATAGAAAAAAG
TTCAGATCTAGACAAGATAAAATGATCAGTCTGCCACACACTTTCTTTTGACTTCTGGTGCAACTGTAGAATTATGCATC
AGTTTCCATCTTCGCTGCGTCAAGGTTAGAACATGATACATTTGACTTGCTATTAATGGTTCTAAACTTCTGTTTGCAGT
ACTTGCCAGATAATAAGTTAATAACAATGCTAGAAATATGTATGGCTCCGTAAATTAT---AGTTGTAATGATGAGGTCT
TTGAAGCGTAAACTTCTCTGTCCATCTTAATTCATTTTTGTAGGAAAAAGTGTCATGACAGCCCAGCCTGCTGTCACAGT
AATAATTAAACACCAATTGAAAATCATAGCAGAACTACATGCACAAGCTTACCTAGTTCGTCTCATTTTCTTTGCTAAAT
CTTTCTGAGAGATACGAAAGCAGTCTTCTGTTCTCAATTTGAACAATGCTCC----------TCTATGTAACCTATTCTG
TACACTGTTTTTTTATATCGGCAAGTTGATAGTTGCTGAATCTAACTCCTTCTGGATAAACTGAAATCAACTATTCGTTG
GTAGCAGCAGGGTTGGTTCCAGTGTCACCCGAGAAGCTTATTGCATGTGCCAATGCCAATAGCAGCAGCAAGATGCCATG
CAGCATGGATATAGGGTGTCTCTGGGAAGTAATCGTCGGCAATAAACAGCGCACCTCCCAAAAGAGATGACATCTTGTGC
AGGTTATGTACCGTTCTGAGCTCTGGTTCAACTGATGCTCTCTTTGCGAAGGAAACCT-----GCCATGTAAACAGTTTG
ATTTATCCAGCAGTTTTCTTTCAACAA----------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------------------------------
-----------------------S-----------------------------------------------S-----SS-
------S------S-S---------------------------S-----S------------S--S------------S-
----------------------S-------S-------------------------------------------------
--------SSSSSSSSSSSS--S-------S-------------------------------------------------
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----------------------------SS----S-----------------SSSSSSS---------------------
-------------------------------------------------------------------------------S
------------------------------------------------S-------------------S-----------
----S----------------------------------------------S----------------------------
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-----------------------------------------S-------------S------------------------
--------------------------------------------------------S--------S--------------
----------------------------------------------------S---------------------------
----------------------------------S------S--------------------------------S-----
-----S--------------------S-----------------------------------------------------
------------------------------------S-------------------------------------------
----------S--------------S--------------S-----------------S---------------------
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------------------------S-------------------------------------------------------
----------------S---------------------------------------------------------------
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----------------------------------------------------------------S---------------
-----S--------------------S--------S--------------------------------------------
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---------------------S--------------------------------------------------------S-
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--------------------------------------------------S-----------------------------
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----------------------------------------------------------SSSS----------------S-
-----------------------S---SSSSSSSSSSSSSSSSSSSSSS
>forward_258
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------------------------------------------------------------------------------AG
GGTTTTTCGCTGCAACAC--------------------------------------------------------------
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>reverse_1526
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-----CACAATGATTTCCGGGCTCG-------------------------------------------------------
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>forward_414
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--------------------------------------------------------------------------AAACAC
ACCAAGCCAGACGA------------------------------------------------------------------
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>reverse_1637
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------------------------------------TTGCAGCCATTCAGGGAAGG------------------------
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>forward_755
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---------------TCTTCCTCTCCTCGACCTCG---------------------------------------------
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>reverse_2166
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-----AAGGGAGCACTGCAACGTTT-------------------------------------------------------
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