>input_sequence_62309
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-AAAGTAACGCGCAAGACCAGCCAGCAGGGAGAGTTTTTCCATTGCTAATCAAGCAACGGTTAGCC---GGTCGGCAAGA
AGCCACACAGAGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCGTGCGGCTCCTTCGACTTGATCCGCA
TCGTTCACCTCAATGGCCACATCGAGGAGTACTCCCGCCCGGTCACCGCCGGCGAGGTCATGGCGGCGCACCCCAGCCAC
GTGGTGAGCCGGCCGTGCTCCCAGGGCGGCGCGCGGCGGATCCTCATTGTCGACGCCGATTCGGAGCTGGAGCGGGGGTG
CTTCTACTTCCTGGTGCCGACCTCGTCAGTGCCGGAGAAGAAGAGGAAGCCGTCGTCGCAGCCACAACAGAAGAAGGTGC
GGTCATCGTCCACGTTGAAGCCGACGAGCGTGCCGAGCAGTGCCGGCGCCGGCGCC------AATAAGGTGACGAAAGAC
CGCGGCGCCGGCGACAGCTACCTGGCGGAGGTGCTGTCGGAAGGCAAGGCCAGGTGCAAGCGCAGCCGGAGCGTCCGCGC
GACGGTGTGGCGGCCGCATCTTCAGATCATCCCGGAAGAAGCTCTCGAGTGAAATCTCTTGCGTGAGCTTTGGTCCCTGT
TGTACATACG-----GGTCTGGGTCTGGTTGTGCATGGTGTACCGTGCACGTACAAGGACGATCGAACGGCGCCGCGTAG
CCATGCGTGACGTGGTGGGCGCTGATGGCCGTTGGGTCGTCCAGTTTTAGGTGAGAGGCCGGCGATCGCCGCCGGTTGCC
TCTCCCTTG-TAGTTTTTCTCACTCTCTCGGTGTTTTTCCAGCTCTTTTCACTGCCGGCCAGATCGGGCTGCTTTGAAGG
CAGTGGGAGTAGTTGGGTTTGGGTTGCCCTCGATGGCAGAGAGAACAGGAGAATCAGAAAACAAGTCTGCAAAAG---TT
TTTTTTTTACGGGTGTAATGACAAGAAGCCAGAAAAGTTCAGCAGAAACTTCAACGTTGTTGTCCATCTTGTCAGGATAT
AT-------------------------------TACGTGCGTTGTTCATCTCTGA-------------------------
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>chr4B_1_TraesCS4B01G189400
TGTGGTTATGATTTGTTATCACGAAAGTTACATCATAGTAGTGTAATTGTCCAGAAAAGGCTTGGCCCAACGAAACCTAA
TACGCTACTCCATATTTTGAACCGAGGGAGTAGAGGCTGTTCCCAGGCACAAATTATGCACTCTTAC--AAAAATGTTAC
TCCTTTTGATCCAAATTAATTGACGCATCTTTAATAGTACAACTTTATTGTACTAAAGTTGT------------------
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----------------GTCAGTTAATTTGGACCGGAAGGAGTAGTACTATTTTTTAGTGGAACTGATATGCAACTATTTT
TAGAGGAATTAATACAGTGCTATTTTTTAGAGAATTAATACAGTACAACTTTAGTATAAATTA-TACTAAAGCTGCGTCA
ACTAATTTGGATCGCAAGGAGTAATACTAATTTTTAGGAGAATTAATATGCAACTATTTTT-AGAGGAATTAATACAGTA
CTAGTTTTAGAGAACTAATACAGTAGTATAACTTTTGTATTATAAAGTTGCACTAAAGCTGCGTCAACTAATTTGGATAG
GAGGGAGTAGTACTAATATTTAGGGGCAGTGGTATCCCCAACCCATCAGATTCCAAATCCTGATGCTCGCATTGTTTCTG
GATTTATTTTAGGATTTTCGGCGATGTGCTTTCAGTGGGAGGAGACGATCCCGTCGATGACGAGGCGCATACGGTGACTT
TGTAAATCTCATGATGATATGTCGGTTCAGTCTCTCGGAGGTGCTAATAGGGGTAGGATGTGCGTGTGTGCGTTCATAGG
GGTGAGTGTATGTGCGTGTATATGAGCGCTTGTGTCTGTACTGATGCTCAAAAGAAAAATCTTTAGGGGAATTGATATGC
AACTATTTTTAGAGGAGTTAATACAGTACTATTTTTTGGGAAATAAATTTGCTACTTTGT---TACATTTTTTTCCTGCA
CAATAGAACACTTCCACTTGTGCAACAACTAGAACCTCTCCCCTATATAAAGGCAGTGGCACACAGACATGCCCAAGAGC
CAAAGTAACGCGCAAGACCAGCCAGCAGGGAGAGTTTTTCCATTGCTAATCAAGCAACGGTTAGCC---GGTCGGCAAGA
AGCCACACAGAGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCGTGCGGCTCCTTCGACTTGATCCGCA
TCGTTCACCTCAATGGCCACATCGAGGAGTACTCCCGCCCGGTCACCGCCGGCGAGGTCATGGCGGCGCACCCCAGCCAC
GTGGTGAGCCGGCCGTGCTCCCAGGGCGGCGCGCGGCGGATCCTCATTGTCGACGCCGATTCGGAGCTGGAGCGGGGGTG
CTTCTACTTCCTGGTGCCGACCTCGTCAGTGCCGGAGAAGAAGAGGAAGCCGTCGTCGCAGCCACAACAGAAGAAGGTGC
GGTCATCGTCCACGTTGAAGCCGACGAGCGTGCCGAGCAGTGCCGGCGCCGGCGCC------AATAAGGTGACGAAAGAC
CGCGGCGCCGGCGACAGCTACCTGGCGGAGGTGCTGTCGGAAGGCAAGGCCAGGTGCAAGCGCAGCCGGAGCGTCCGCGC
GACGGTGTGGCGGCCGCATCTTCAGATCATCCCGGAAGAAGCTCTCGAGTGAAATCTCTTGCGTGAGCTTTGGTCCCTGT
TGTACATACG-----GGTCTGGGTCTGGTTGTGCATGGTGTACCGTGCACGTACAAGGACGATCGAACGGCGCCGCGTAG
CCATGCGTGACGTGGTGGGCGCTGATGGCCGTTGGGTCGTCCAGTTTTAGGTGAGAGGCCGGCGATCGCCGCCGGTTGCC
TCTCCCTTG-TAGTTTTTCTCACTCTCTCGGTGTTTTTCCAGCTCTTTTCACTGCCGGCCAGATCGGGCTGCTTTGAAGG
CAGTGGGAGTAGTTGGGTTTGGGTTGCCCTCGATGGCAGAGAGAACAGGAGAATCAGAAAACAAGTCTGCAAAAG---TT
TTTTTTTTACGGGTGTAATGACAAGAAGCCAGAAAAGTTCAGCAGAAACTTCAACGTTGTTGTCCATCTTGTCAGGATAT
AT-------------------------------TACGTGCGTTGTTCATCTCTGATGCATCCTCCAGTGAGCTGTACAC-
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----------------------------AGGTTTGAGGAAACTTCCTGAATCGCATGGTAATCAGTAGCCG---GACGGC
AGGTTCCCGTTGGTTTTTGCGGGTGGCTCATCCCTGTCCCATATTTTCTTC---AGATTTAGCTGCCGCGTGAACTAAAT
ACCGGAGCAGACGAAAC----ATACATCTAATCCAAACAGGGTCTCGGTCTCCACTGGCCTTGTCTAGAACTTGCTGCTA
ATCAGTCAAAACAAGTCGCAAAATTGCGTCGAGTTGTATGGAAGGGGACGAAAGTTTTTTGTCCGATGCAGGCATGAAAC
AAGGGGAGCTTTTTCTCCGTCACGTCCGGACATCCGGTGGTATGAGCTGTACCTCAGGTTAAACAACAGTGAAGCAGCTC
TAGCCCCAAGTGAGCACGAGAAGCCACCCTTCAACACTCTGCCAAGTGGCAAGGGAAGTGCCAGTGCCAGCGCGTCCAAC
TTCATGGAAGCACTCCTTTGTGTGTGTGGGCCGA----------------------------------------------
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--------------------------------------------------------------------------GAGACC
AATATACTCCTTCGATCGAGAGCAGGCTTTCTTTAGTGAATGGACACTCTCACAGGACTACCAGGTTGACAATCATGGGC
TAGATGCATCACCAATCCGGTTAAACACATTAGGGCATCTCCAACACGGATCTTCAAACCGTCTGCATCAGTCCCGGACT
CCGCAAGCCATTCAACGGCG--CCCCATCAGTTCGCGGAGCAATCCAGACAGCACGGTCCAAACTCCGCAAACCATTCAA
CGGCGCCCTGATGATGATATAAACCTAGGGTAGGGTCATAGGCCTGACCTATACGCCCTACCCAAGGTCACTACCCTAGA
AGCAAAGACATCCAAGAGACGACGGGGAGTACCAATTGAAGGCGTCGAGTGCCATCCACTCGATCAGTCATATCACTTGG
GTACCCCTCCCTCCTGATATCACTCGACCGTACGAGAAACCACTCGACTTAAAGAAGACCGGGAGTCACTCTGGACAGCA
ACGGTCAGGCGTTCAC
>chr4A_1
TGTGGTTATGATTTCTTATCACGAAAGTTATATCATAATAGTGTAATTGTCCGGAAAAGGCTTATTCCAACGAAACCTAA
TACACTACTCCATAATTTCAACCGAGGGAGCAGGGACTGTTTTGAGGCACAAATTATTCACTCTTGAAAAAAAATGTTAC
TCCCTCCGATCTGAATTAATTGACGCAACT-----------------TTATACTAAAGTTGTACTAAAGCTGCCTG----
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-------------------AACAAATTTGGATCGTAGGGAGTAGTACTAATTTTTAGGGGGATCAATATGCAACTATTTT
TAGAGGAATTAATACC------G-TTTTAGATAATTAATACAATACAACTTTAGTATAAAGTTGTACTAAAGCTGTGTCA
ACTAATTTGGATTGGAAGGAGTAGCACTATTTTTTAGGGAAATTGATATGCAACTATTTTTTAGAGGAATTAATATAACA
ATATTTTTAGAGAAATAA--------------------------------------------------------------
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----------------------------------------------ATTTGCTACTTTGT---TACATTTTTTTCCTGCA
CAATAGAACCCTTGCACTTGTGCAACAACTGGAACCTCTCACCTATATAAAGGCAGTGGCACACAGACATGCCCAAGAGC
CAAAGTAAGGCGCAAGACTAGCCAGCAGGGAGAGTTTTTCCATTGCTAATCAAGCAACGTTTAGCCGCCGGCCGGCAAGA
AGCCAAGAA-AGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGCGGCTCCTTCGACTTGATCCGCA
TCGTCCACCTCAACGGCCACATCGAGGAGTACTCGCGCCCGGTCACCGCCGGCGAGGTCATGGCGGCGCACCCCAGCCAC
GTGGTGAGCCGGCCGTGCTCCCAGGGCGGCGCGCGGCGGATCCTCATTGTCGACCCCGATTCGGAGCTGGAGCGGGGGTG
CTTCTACTTCCTGGTGCCGACCTCGTCGGTGCCGGAGAAGAAGAGGAAGCCGTCGTCGCAGCCACAACAGAAGAAGGTGC
GGTCATCGTCCACGTCGAAGCCGACGAGCGTGCCGAGCAGTGCGGGCGCCGGCGCCGGCGCTAATAAGGTGACGAAAGAC
CGCGGCGCCGGCGACAGCTACCTGGCGGAGGTGCTGTCGGAGGGCAAGGCCAGGTGCAAGCGCAGCCGGAGCGTCCGCGC
GACAGTGTGGCGGCCGCATCTTCAGATCATCCCGGAAGAAGCTCTCGAGTGAAATCTGCTGTGTTAGC-TTGGTCCCTGT
TGTACATACGGGTCTG------GTCTGGTTGTGCACGGTGTACCGTGCACGTACAAGGACGACCGAACGGCGCCGCGTAG
CCATGCGTGACGTGGTGGGCGGTGATGGCCGTTGGGTCGTCCAGTTTTAGGTGAGAGGCCGGCGATCGCCGCCGGCTGCC
TCTCCCTTGGTAGTTTTTCTCACTCTCTCGGTGTTTTTCCAGCTCTTTTCACTGCCGGCCAGATCGGGCTGCTTTGAAGG
CAGTGAGAGTAGCT-GGTTTGGGTTGCCCTCGATGGCAGAGAGAACAGGAGAAGCAGAAAACAAGACTGCAAGAGCTTTT
TTTT----ACGGATGTAATGACAAGAAGCCAGAAAAGTTCAGCAGAAACTTCAATATTGTTGTCCATCTTGTCAGGATAT
AT-------------------------------TACGTGCGTTGTTCAGCTCTGATGCATCCTCCAATGAGCTATACTCC
TGTGTACGTAT---------------------------------------------------------------------
----------------------------AGGTTCCAGGAAACTTCCTGAATCGCACGGTAATCAGTAGCCAGACGACGGC
AGGTTCCCGTTGGTTTTTGCGGGTGGCTCATCCCTTTCCCATATTTTCTTCTTCAGATTTAGCTGCCCCGTGAACTAAAT
ACCGGAGCACACGAAACATATATACATCTAATCCAAATAGGGTCTCGGTCTCCACTGGTCTTGTCTAGAACTTGCTGCTA
ATCAGTCAAAACAAGTCGCAAAATTGCGTCGAGTTGTATGGAAGGGGACGAAAGCTTTTTGTCCGATGCAGGCATGAAAC
AAGGGGAGCTTTTTCTCCGTCACGTCCGGACATCCGGTGGTATGAGCTGTACCTCAGGTTAAACAACAGTGAAGCGGCTC
TAGCCCCAAGTGAGCACGAGAAGCCACCCTTCAACACTCTGCCAAGTGGCAAGGGAAGTGCCAGTGCCAATGCGTCCAGC
TCCATGGAAGCACTCCTTTGTGTGTGTGGGCCGAGAGAGTAGTAATAAGGCTGGTCATAGTGGGAAGTAACTTATATATT
ATTATTTTTTAGAAAAGGAGGATGACCCCCGGCCTCTGCATCTGGGAGATGCATACGGCCACTTTATTGATTATTCTCGA
GGACCTTACAAAGTATTACAACAATGTGCCTGAATCCACCATCTTGGAAACATATGCCGCTACTCCTATCCAAAATGATG
AAGGGTTGCTAGCTGAGTCACTAGCTAGACCACTCACCCAAGCCTAACATCAAAAGCCGAAAGCTGAAACACATTCGGAA
GCCCCAGCTAGTCTAAATTACTACCTTTATAGTGCAAAGTAACATAGTAGTAGTGTCATAGAGGACTTTATTAATGAGTT
TGTAGACTCATCTTGTCTTGGAAAGTGCTATGTTATAGTAACATATTATATTACCACTTCTCATTAACTACATGCCACAT
AAGCAAAAATTTCTCGGGATGCGCTATGTTACTAGGTAAGTTACTCCCACTATGACTAGCCTAAGGCTGCCCATGAGACC
AATATACTCCTTCGATCGAGAGAAGGCTTTCTTTAGTGAATGGACACTCTCATAGGACTACCAAGTTGACAATCATGGGC
TAGATGCATCACCAATCCGGTTAAACACATTAGGGCATCTTCAACACGGATCCTCAAACTGTCTGCATCGGCCCCGGACT
CCGCAAGTCATTCAATGACGTCCCCCATCGGTTCACGGAGCAGTCCGGACCGCACGGTCCGAGTTCCGCAAGCCATTCAA
TGGCG---------------------------------------------------------------------------
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>chr4D_203
TTACT---------------------------------------------------------------------------
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-----------------------------------------------------------TGTACTCAAGCCGCGTCAATT
AATTTGGACCGTAGGGAGTAGTACCATTTTTGTGTGGAATTGATATGCAACTATTTTTAGAGGAATTAACATGGTACTAT
TCTTAGAGAAAGCCGCGTCAACTAATTTGGATCGCAGAGAGTAGTGCTAATTTTTAGGAGAATTAATATGCAACTATTTT
TAGAGGAATTAATACAGTACTAG-TTTTAGAGAACTAATACAGTAGT---------------------------------
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---------------------------ATAACTTTTGTACTATAAAGTTGTACTAAAGC-GCGTCATCTAATTTGGAAAG
GAGGGAGTAGTACTAAT---------------------------------------------------------------
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------------------------------------------------------------CTTTAGGGGAATTGATATGC
AACTATTTTTAGAGGAATTAATACAGTACTGTTTTTAGGGAAATAAATTTGCTACTTTGTTACTACATTTTTTTCCTGCA
CAATAGAACACTTCCACTTGTGCAACAACTAGAACCTCTCCCCTATATAAAGGCAGTGGCACACAGACATGCCCAAGAGC
CAAAGTAAGGCACAAGACCAGCCAGCAGGGAGAGTTTTTCCATTGCTAATCAAGCAACGTTTAGCC---GGGCGGCAAGA
AGCCAAGAA-AGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGCGGGTCTTTCGACTTGATCCGCA
TCGTCCACCTCAACGGCCACATCGAGGAGTACTCCCGCCCGGTCACCGCCGGCGAGGTCATGGCGGCGCATCCCAGCCAC
GTGGTGAGCCGGCCGTGCTCCCAGGGCGGCGCGCGGCGGATCCTCATTGTCGACCCCGATTCGGAGCTAGAGCGGGGCTG
CTTCTACTTCCTGGTGCCGACCTCGTCGGTGCCGGAGAAGAAGAGGAAGCCGTCGTCGCAGCCACAACAGAAGAAGGTGC
GGTCATCGCCCACGTTGAAGCCGACGAGCGTGCCGAGCAGTGC------CGGCGCCGGCGCCAATAAGGTGACGAAAGAC
CGCGGCGCCGGCGACAGCTACCTGGCGGAGGTGCTGTCGGAGGGCAAGGCCAGGTGCAAGCGCAGCCGGAGCGTCCGCGC
GACGGTGTGGCGGCCGCATCTTCAGATCATCCCGGAAGAAGCTCTCGAGTGAAATCTGCTGTGTTAGC-TTGGTCCCTGT
TGTACATACG-----G------GTCTGGTTGTGCATGGTGTACCGTGCACGTACAAGGACGACCGAACGGCGCCGCGTAG
CCATGCGTGACGTGGTGGGCGGTGATGGCCGTTGGGTCGTCCAGTTTTAGGTGAGAGGCCGGCGATCGCCGCCGGCTGCT
TCTCCCTTG-TAGTTTTTCTCAGTCTCTCGGTGTTTTTCCCGCTCTCTTCACTACCGGCCAGATCGGGCTGCTTTGAAGG
CAGTGAGAGTAGTTGGGTTTTGGTTGCCCTCGATGGCAGAGAGAACAGGAGAAGCAGAAAACAAGTCTGCAAAAGCTTTT
TTTTTTTTACGGATGTAATGACAAGAAGCCAGTAAAGTTCAGCAGAAAATTCAATTTTGTTGTCCATCTTGTCAGGATTA
CGTTTTATTTTTTTGAGCAAATCTTGTCAGGAGTACGTGCGTTGTTCATCTCTGATGCATCCTCCAATGAACTGTATATA
TACTCCCTCCGTTCCAAAATAGATGACTCCATTTTATACTAACTTTGTATTAACTATAGTACAAAGTTAGTATAAAGTGG
AGTCATCTATTTTGAAACGGAGGGAGTAAGGTTTCAAGAAACTTCCTGCATCGCACGGTAATCAGTAGCCG---GACGGC
AGGTTCCCGTTGGTTTTTCCGGGTGGCTCATCCCTGTCCCATATTTTCTTC---AGATTTAGCTGCCGCGTGAACTAAAT
ACCGGAGCACACGAAAC----ATACATCTAATCCAAGCAGGGTCTCGGTCTCCACTGGTCTTGTCTAGAATTTGCTGCTA
ATCAGTCAAAACAAGTCGCAAAATTGCGTCGAGTTGTATGGAAGGGGACGAAAGCTTTTTGTCCGATGCAGGCATGAAAC
AGGGGGAGCTTTTTCTCCGTCACGTCCGGACATCCCGTGGTATGAGCTGTACCTCAGGTTAAACAACAGTGAAGCGGCTC
TAGCCCCGAGTGAGCACGAGAAGCCACCCTTCAACACTCTGCCAAGTGGCAAGGGAAGTGCCAGTGGCAGCGCGTCCAAC
TCCATGGAAGCACTCCTTTGTGTGTGTGGGCCGAGAGAGTAGTAATAAGGCC----------------------------
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--------------------------------------------------------------------GCCCATGAGACC
AATATACTCCTTCGATCGAGAGCAGGCTTTCTTTAGTGAAAGGACACTTTCATAGGACTACCAAGTTGACAATCATGGGC
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>SNPs
--------------S---------------S------S--------------S----------SSS--------------
---S----------S---S-----------S--S-S-----SSS-------------S-------SS-------------
---S-SS----SS--------------S--SSSSSSSSSSSSSSSSS--S------------------------------
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--------------------SS---------S--S-S------------S-------S----S-S---------------
------------------S---SS------------------------------------S-S------------S----
------------S-S--------SS----S--------SS----S------------------------------S-SS-
S--S----------S---SSSSSSSSS------------S----------S--------S------S----------S--
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
----------------S-------------S-----S-------------------------------------------
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--------S--------------------------------------------------S-----------S--------
-----SSS-S--------------------------------------------S-------------------------
----S--------S------------------------------------------------------------------
------------------------------------------------------S-------------------------
---------------------------S----------------------------------------------------
-------------------------------------------S------------------------------------
-----------------------------------------S--------------------------------------
---------------------------------------------------------SS--S--S---S-----------
----------------SSSSSS----------------------------------------S-----------------
---------------------S-----------------------------------------------------S----
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-----S-----------------------------------------------S--------------------------
------------S-----------------------------------------SS------------------------
------------------------------------------------------------------S-------------
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----------------------------------S--------------------S------------------------
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---------S------------------------------------------------S---------------------
------------------------------------------------------S-------------------------
---------------------------------------------------------------------------S----
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-S------------------------------------------------------------------------------
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----------------------------------------------------S----------S----------------
----------------------------------------S-----------S------S---------S-S--------
-------S-------S-S-----------S----S-------S---S---S---------S-SS-------S--------
S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_885
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-----------------------------------------------------------------GTGTGCGTTCATAGG
GGTGA---------------------------------------------------------------------------
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>reverse_3567
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----------------------------------------------AGACAGCACGGTCCAAACTC--------------
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