>input_sequence_62297
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-----------------------------------------CGCGGTAGTGGATCGCCACTTTCTTTGTCCTCGTCTTAC
CTTGATCCTGTCCTGGCCAACGACGAGGATCCCCACAATTCCCTCCTCCTGCTT-CGCATCGTATCCCAAAGAACCAAGA
AACAGAGCAAG---AGATATCTTAGGACGGAGCAGAGTACAGAGAGAGAAAGAGGGATTAGCGCTTGCTTGCTGGGAGGG
AGAGACATGGACCAGATCATGAACAAGATGGGCTCCTACTGGCTGGGGCAGAGGGCCAACAAAGAGATGTCGTCGGCCGG
TGACGATATCGAGGTCCGTGCATGAGACAGCGTCTCATCAATCTACTGTTCTGTTCTGTTCTCTTG-TCGCACCATATTT
CCCCTGATTATTGCTTGGTCATGGTATTGTTTCT-----GTTCTCGTGCTAGCATGTTTTCCTTCTGGTTTTAGATCGAT
CCTGGCTGGATCGCCATGCGATACTTTTGGTTCGACGTTCAAGCTCGCTATAACAAATTTGAAATCCGACTCTGATAATT
AAGGTCTATGATTCGATGTATTCCTTTGGCTGA------------------TGATCTATTGGTGGTGCAGTCGCTCTCGA
CCAGCGTCGGGGACGGAGCAAAATGGCTGGTGAACAAGCTCAAGGGTAAGATGCAGAAGCCGCTGGCGGAGCTGCTCCAG
GAGCACGACCTGCCGGTGGGGCTGTTCCCGCGGGAGGCCACCAACTACGAGTTCGAGCCGGAGACGCGGCGGCTGACGGT
GCACATCCCGGCAGTCTGCGAGGTCGGCTACAGGGACGGCTCCGAGCTGCGCTTCGACACCACGGTGGCCGGCACGCTGG
ACAAGGGCAGCCTGACGGGGGTGGAGGGCCTCAAAGCCAAGGTGCTCGTCTGGGCCAGGGTCACCGCCGTCAAGGCCGAC
GCCGCAAAGGTCTACTTCGCCGTAGGCATCAAGAAGTCGCGCAGCCGCGAGGCATACGAGATCATCAGAGGCGCCATCAC
CGTCGACGAGTTCTAGATTCTAGTCG----CGCGCTCGTCGAGATGATTGTTCTACCGAAATAATTGATCAGGTGCTTA-
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>chr4B_1_TraesCS4B01G190100
CGGCGAAGAGGCTGCCTCAGCGAAACCCCTTCTTTTTCCCGACTGGAGATGGTCTACCTAGCTGCGGTGGGCGGTGGTCG
GCGTCGGGATCGGCAGGGTGGCGAAGGGTGGCGGCCGATCGCGGGGGGCAGGAGGCGAATCTGGGCGGGTGGCTTGACTT
TTCGCCTGTCAATGTGGCCCGAGGAACGCTTTTCTCTTGCGCCGGAGCCCCCGAGCGCCCCCCAGTGTGCCGGGTTCAGC
CTGCGAGCGCCGGGCGCAAAAACCGACCGAGCCGGCGGAATTCGACGTCCTGGGGGCGCGAATGGGCGTTTTTTCAGCGC
CGGCGCAAATAAATCACCTGGGAAGACCGTCCTGCAGAGGCGGCTGGAGATGCTCTCATATCCTATATCATATATACCTA
AGTAGTCTCTCATGTAATTGATTTTTGTCATCTAGTCTTTCGCCTGTTTTGAAATGGATAAGGTACAGATTGCTCTGCCT
TTTATTTCGAAAAATAAATCCTAATCTCAACTATAATAGTTTCTTGCTATTTACTCTCGACGGCCTCTTCGATACAGGAC
AAGGATCCATTAGGGCATGTACAATGGTTCTATTTTAGAAATGCCACGTAGGATAAATGATGAGGTGAAAAAGAGAGAAA
TTGTTAGAAAAAACTTGCCTTCTCTTATTTAAGAGAAGACAAGAGATGATCTTTTAGCACAATATGTCTCACCATATTTT
TAGGAATAGCTAGTTATTAAAGATAAGACTAAGAGATGACCCATTATAGACTTTTTTTTGTCATCTCTAAATTACATGAA
AAATTTAAGATAAGACTATTTTATCAATCATTGTACATTGCCCTTAGTACCACGTAGAACCGTTTACTTACCGCCATCCC
GGAGGTTTCTGGAATGCGAGGCGACCCAACCTTCC-AAGTCACACATGTCATCAACAGCCGGCGTTTTTCAACACGCGCA
GCCGTCTCAACGACCAAGCCATACGAGACCCGTCTCTTTCACGCGGTAGTGGATCGCCACTTTCTTTGTCCTCGTCTTAC
CTTGATCCTGTCCTGGCCAACGACGAGGATCCCCACAATTCCCTCCTCCTGCTT-CGCATCGTATCCCAAAGAACCAAGA
AACAGAGCAAG---AGATATCTTAGGACGGAGCAGAGTACAGAGAGAGAAAGAGGGATTAGCGCTTGCTTGCTGGGAGGG
AGAGACATGGACCAGATCATGAACAAGATGGGCTCCTACTGGCTGGGGCAGAGGGCCAACAAAGAGATGTCGTCGGCCGG
TGACGATATCGAGGTCCGTGCATGAGACAGCGTCTCATCAATCTACTGTTCTGTTCTGTTCTCTTG-TCGCACCATATTT
CCCCTGATTATTGCTTGGTCATGGTATTGTTTCT-----GTTCTCGTGCTAGCATGTTTTCCTTCTGGTTTTAGATCGAT
CCTGGCTGGATCGCCATGCGATACTTTTGGTTCGACGTTCAAGCTCGCTATAACAAATTTGAAATCCGACTCTGATAATT
AAGGTCTATGATTCGATGTATTCCTTTGGCTGA------------------TGATCTATTGGTGGTGCAGTCGCTCTCGA
CCAGCGTCGGGGACGGAGCAAAATGGCTGGTGAACAAGCTCAAGGGTAAGATGCAGAAGCCGCTGGCGGAGCTGCTCCAG
GAGCACGACCTGCCGGTGGGGCTGTTCCCGCGGGAGGCCACCAACTACGAGTTCGAGCCGGAGACGCGGCGGCTGACGGT
GCACATCCCGGCAGTCTGCGAGGTCGGCTACAGGGACGGCTCCGAGCTGCGCTTCGACACCACGGTGGCCGGCACGCTGG
ACAAGGGCAGCCTGACGGGGGTGGAGGGCCTCAAAGCCAAGGTGCTCGTCTGGGCCAGGGTCACCGCCGTCAAGGCCGAC
GCCGCAAAGGTCTACTTCGCCGTAGGCATCAAGAAGTCGCGCAGCCGCGAGGCATACGAGATCATCAGAGGCGCCATCAC
CGTCGACGAGTTCTAGATTCTAGTCG----CGCGCTCGTCGAGATGATTGTTCTACCGAAATAATTGATCAGGTGCTTAC
TCTACCTGCTGTAAGAGGAGGATGCTTGTAAATGGGGATTCAGAATTCAATTTTGCAGCTTATCAAGTTCGATGCATCGC
CGCCTGTCAAAAAAAAAAAAAAAGCTCCCATGTCGGAATTCAGA-----------------ATTCAACAAAAAT------
--TTGCACCAGCCGGGAATCGAACCCGGGTCTGTACCGTGGCAGGGTACTATTCTACCACTAGACCACTGGTGCTTGCCG
ATTATTAAGG--------------------------ATAATGCGCCTATCAAAGACGCAGCCGCACACATCCGATGGGGA
AATGGATCGCCGATGTTCACAGCTTGTGTGCAGGAGCGTATGATCAACCTGAAC-TGCCGTCTTTTGCGAGATCATGCGG
ATTTGGACCAGCAAGAACACAGATATCACCTTTTTTTCTGGATGAAAACTT-----------------------------
TGTATTTTTTTTTAGAAAAGGATGAAAACTTTGTATTACTCAATCACAATGTTATTAACATCTGTTGGAGCTAACTCAAC
TACATCAGGAGGACTAAAAACCAAGCCATGGTTTTGCCATCTGGCAAAATT-----------------------------
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-------------------------------------------------TGCTAGGCAATCACTAACCTTGTTCTTCATA
C--------GACTAACATGAGTAATGCAACTTTCATGGAGTGACATCAAGTACGTAATTTTCTTTACGATAGAAGCGTAG
ATCGATCGGGCGAGGTCACGCGTCTGGACCAACTTCATAACAACTAGAGAGTCCATCTCAATGATAATTAGAGATTCACC
TTGCTGGAGGGGCAAAGACAAACCTTCCATGCACGCACAGAATTCCGTCTCTAAAGCATACCGACAAGAGAATAACTGTC
TGCACGAGGGGAAAATGATAGTACCGACACGGATACCACTTACCATGACTATATTAACCACACAAAGAAGCAAACAACCC
CACGACTACAAAC---------------------------ATGGTATACCTATTACATACCATGCTTCGGCCAGTTGCGT
TTATGCAAAGAGTTGCACTTGGATTTCATCTAAAAAAAGAGGTGCACTTGGATTCAACTAGGATCAAAGAATC
>chr4A_841
CCCATT--------------------------------------------------------------------------
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---------------------------------------------AGTACCACATACAACCGTTCCCTTACCGCCATCCC
GGAGGTTTCTGGAATGCGAGGTGACCCAACC-TCC-AAGTCACACATGTCATCAACAGCCGGCGTTTTTCAACACGCGCA
GCCGTCTCAACGACCAAGCCATACGAGACCCGTCTCTTTCACGCGGTAATGGATCGCCACTTTCTTTCTCCTCGTCTTGC
CTTGATCCTGTCCTGGCCAACGACGAGGCTCCCCACAATTCCCTCCTCCTGCGAACGCATCGTATCCCAAGAAACCAAGA
AACAGAGCAAG---AAATATCATA-GAGGGAGCAGAGTACAGAGAGAGAAAGAGGGATAAGCGCTTGCTTGCTG----GG
AGAGCCATGGATGAGATCATGAACAAGATGGGCTCCTACTGGCTGGGGCAGAGGGCCAACAAAGAGATGTCGTCGGCCGG
TGACGACATCGAGGTCCGTGCATGAGACACCGTCTCATCAATCT-----TCTGTTCTGTTCTGTTG-TCGCACCATATTT
CCCCTGATTATTGTTTGGTCATGGTATTGTTTCT-----GTTCTCG--CTAGCATGTTTTCCTTCTGGTTTTAGATCGAT
CCTGGCTGGACCGCCATGTGATACTTTTGGTTCGACGTTCAAGCTCGCTATAACAAATTTGAAATCCGACTCTGATAATT
AAGATCTATGATTCGATGTATTCCTCTGGCTGA------------------TGATCTATTGGTGGTGCAGTCGCTCTCAA
CCAGTGTCGGGGACGGAGCAAAATGGCTGGTAAACAAGCTCAAGGGTAAGATGCAGAAGCCGCTGGCGGAGCTGCTCCAG
GAGCACGACCTTCCGGCGGGGCTGTTCCCGCGGGAGGCCACCAACTACGAGTTCGAGCCGGAGACGCGGCGGCTGACGGT
GCACATCCCGGCGGTCTGCGAGGTCGGCTACAGGGACGGCTCCGAGCTGCGTTTCGACACCACGGTGACCGGCACGCTGG
ACAAGGGCAGCCTGACGGGGGTGGAGGGCCTCAAAGCCAAGGTGCTCGTCTGGGCCAGGGTCACCGCCGTCAAGGCCGAC
GCCGCAAAGGTCTACTTCGCCGTAGGCATCAAGAAGTCGCGCAGCCGCGAGGCATACGAGGTCGTCAGAGGCGCCATCAC
CGTCGACGAGTTCTAGATTCTAGTCG----CGCGCTCGCCGAGATGATTATTCTACCGAAATAATTGATCATGTGCTCAC
ACTACCTGCTGTAAGAGGAGGATGCTTGTAAATGGGGATTCATAATTCAGTTTTGCAGCTCATATGGTTTCTGTGTGAAT
GTGTGAAGCTCGATGCGCAGTAGGGCAGTGGCCAATCGGCATCGACGTGCACAAGAGGATGATTCAACCAAAAAATCAC-
--TTGCACCAGCCGGGAATCGAACCCGGGTCTGTACCGTGGCAGGGTACTATTCTACCACTAGACCACTGGTGCTTGCTG
GTTAAGTTTTAGTAACACTTAGTTTTTATATTAAAAATAATGCATCCACCAAATACGCAACCGCACACATCCGATC-GGA
AATGGATCGCCGACGTTCACAGCTTGTGTGCAGG-GCGTATGATCAACCTGTACTTGCCGTCTTTTGCGAGATCATGCGG
ATTTGGACCAGCAAGAACACATATATCACTTTTTTTTCCGGATGAAAACTC-----------------------------
TGTAT-------------------------------TACTCAATCACAATGTTATTAAAATCTGTTGGAGCTAACTCAAG
TGCACCAGGA-GACTAAAAACCAAGCCATGGTTCTGCCATCTGGCAAAATTGAGCGCCGCTATAAAGATGACACTGTCCG
GCCGATTTTGAGACGATGCCATTCATCCAACCATGCATGGTGAGGAGCAAGTGTCACACGGCCGCTGGATCAGGTGTCGT
CTGAAAATCGTTCACCGAGTGTCGGCGCAGAGTAGTTCCACGCAAAATTTGCTAGGCAATCGCTAACCTTGTTCTTACTA
CTCGTACGAGACTAACATGAGTAGTACATCTTTCATGGAGTGACATCAAGTACGTAATTTTCTTTATGATAGGGGCATAC
ATCAATCTGTCGAGGTCACACG----------------------------------------------------------
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>chr4D_841
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----------------------------------------CCATTAGTACCGCATACAACCGTTTCCTTACCGCCATCCC
GGAGGTTTCTGGAATGCGAGCTGACCCAACC-TCCTAAGTCACCCATGCCATCAACAGCCGGCGTTTTTCAACACGCGCA
GCCGTCTCAACGACCAAGCCATACGAGACCCGTCTCTTTCACGCGGGAATGGATCGC-ACTTTCTTTCTCCTCCTCTCGC
TTTGATCCTGTCCTGGCCAACGACGAGGCTCCCCACAATTCCCTCCTCCTGCTTG-GCATCGTATCCCAAAAGACCAAGA
AACAAAGCAAGGGAAAATATCATAGGAGGGAGCAGAGTACAGAGAGAGAAAGAGGGATAAGCGCTTGCTTGCTG----GG
AGAGACATGGATGAGATCATGAACAAGATGGGCTCCTACTGGCTGGGGCAGAGGGCCAACAAAGAGATGTCGTCCGCCGG
TGACGATATCGAGGTCCGTGCATGAGACAGCGTCTCATCAATCT-----TCTGCTCTGTTCGTTTTCTCGCAGCATATTT
CCTTCGATTATTGTTTGGTCATGGTATTGTTCGGTTCTCGTGCTAG--CTAGCATGTTTTCCTTCGTGTTTTAGATCGAT
CCCGGTTGGATTGGCATGTGATA-------------------------------------------------------TT
AAGATTGATTATTCGATGTGCTCCTTTTGCTGCTGACGCGATCTTCTTGTCTGATCGATCGGTGGTGCAGTCGCTCTCAA
CCAGCGTCGGGGACGGAGCAAAATGGCTGGTGAACAAGCTCAAGGGTAAGATGCAGAAGCCGCTGGCGGAGCTGCTCCAG
GAACACGACCTGCCGGCGGGGCTGTTCCCGCGGGAGGCCACCAACTACGAGTTCGAGCCGGAGACGCGGCGGCTGACGGT
GCACATCCCGGCGGTCTGCGAGGTCGGCTACAGGGACGGCTCCGAGCTGCGGTTCGACACCACGGTGGCCGGCACGCTGG
ACAAGGGCAGCCTGACGGGGGTGGAGGGCCTCAAAGCCAAGGTGCTCGTCTGGGCCAGGGTCACCGCCGTCAAGGCCCAC
GCCGCAAAGGTCTACTTCGCCGTAGGCATCAAGAAGTCGCGCAGCCGCGAGGCTTACGAGGTCATCAGGGGCGCCATCAC
CGTCGACGAGTTCTAGATTTAGATTCTAGTCGCGCTCGCCGAGATGATTA-TCTACCGAAATAATTGATCACGTGCTTAC
TCTGCCTGCTGTAAGAGGAGGATGCTTGTAAATGGGGATTCAAAATTCAGTTTTGCAGCTCATATGGTTTCTGTGTGAA-
-------GCTCGATGCGTAATAGGGCAGTGGCCAATCGGCATCGACGTGCACAAGAGGACGATTCAACAAAAAAAATGAA
AATTGCACCAGCCGGGAATCGAACCCGGGTCTGTACCGTGGCAGGGTACTATTCTACCACTAGACCACTGGTGCTTGATG
ATTATT---G--------------------------ATAATGCACCGCTTAAATATGCAACCGCTCACATCCGAT-GGGA
AATGGATCGCCGACGTTCACAGCTTGTGTGCAGGAGCGTATGATCAACCTAAAC-TGCCGTCTTTTGCGAGATCATGCGG
ATTTGGACCAGCAAGAACACAGATATCACCTTTTTTTCTGGATGAAAACTTTATAATTTTTTTAGAAAGGATGAAAACTT
TGTAT-------------------------------TACTCAATTACAATGTTATTAACATCTGTTGGAGCTAACTCAAC
TACATCAGGAGGACTAAAAACCAAGCCATGGTTTTGCCATCTGGCAAAATT-----------------------------
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-------------------------------------------------TGCTAGGCAATCACTAGCCTTGCTCTTACTA
TA--------ACTAACATGAGTAATACAACTTTCATGAAGTCACATCAAGTACGTAATTTTCTTTACAATGGAAGCGTAG
ATCGATCTGTCGAGGTCACGCGACTGGACCAACTTCATAACAACTAGAGAGTCAATCTCAATGATAATTAGAGATTCACT
TCCTTGGAGGGACAAAGATAAACCTTTCATACACGCACATAATTCCGTCTCTAGAGCATCCCGACAAAAGAATAACTGTC
GAGGA-----GAAAATGATAGTACCGACACGGATACCACTTACCATGACTATATTAACCACGCAAAGAAGCAAACAACCC
CACGACTACAAACATGGTATACCTATTTTTTTCGAAAAGGATGGTATACCTATTACAGACCATGCTTCGGCCAGTTGTGT
TCATGCAAAGAGTTACACTTGGATTTCATCT-AAAAAAGAGGTGCACTTGGATTCAACTAGGATCAAAGA---
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------S--S--------S--------------
---------------------S---------S------------------------------------------------
------------------------------------------------S------------------S----------S-
----------------------------S------------------------------------------S--------
---------------S-----S-----S------------------------------S---------------SSSS--
-----------SS-------------------------------------------------------------------
--------------------------------------------SSSSS-------------S-----------------
-------------S--------------------------------SS--------------------------------
------------------S-------------------------------------------------------------
---S--------------------------------------------------------------------------S-
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----------------S---------------------------------------------------------------
------------S--------------------------------------S----------------------------
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------------------------------------------------------------S-------------------
--------------------------------------S----------S---------------------S--------
------------------------------------------S------S----------S--SSS---SSSSSSSSSSS
SSSSSSSSSSSS-SSSSS--S-S-SSSSSSSSSSSSSSSSSSSS-----------------------------S------
------------------------------------------------------------------------------S-
------SSS----------------------------------S--S------S-----S---------------S----
-------------S------------------------------------------------------------------
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-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------
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----------------------------------------------------------------------------SS--
-------------------------S------------------------------------------------------
-------S-S------------S------------------------------S-------------------------S
-SSS-------S------S-------S---S--------S-------------S-----S-------S------------
SSSSSSSSSS---------------------------------------------------S------------------
---------------------------------------------------------S-------------------S--
-S------------S----------------S--------------------------------------SSS
>forward_558
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----------------------------------------------------------GACGGCCTCTTCGATACAGG--
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>reverse_1981
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------------------------------------------------------------ATCATCAGAGGCGCCATCAC
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>forward_1212
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------------------------------------------------------------------------TGGGAGGG
AGAGACATGGAC--------------------------------------------------------------------
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>reverse_3067
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--------------------------CCATGCACGCACAGAATTCC----------------------------------
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