>input_sequence_62270
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---------------------------------------ATGGCGTTCCGCAGAACCATCGCACGGAGCATATGGGCAGC
CAAGAACGCGGCCACCTGCGCCGCCGCCGTGCCCAAGCCCAAGCCCCCGCCTCCCATTCTCCCGGCGCGCCGGACGCTGC
CGGTGGTGGAGGACTGCCCGACGCTCGCATTCCTGCGCCCGCGCCCGGCCACCGCCCGCTACTCCACCGTCTCCGTCCCG
CTCCCGCACCACTGCTTCCCCGCCTTCCCCGTCGGCGACCAGCTGTTCAACCGCCTCGTCGACGGGCTCACGCCGCCGCC
TGCCGCCGTGCCGTGGAGGCCCGGGGAGACGGGCGTGACGCTGCACGAGGCGAGGAAGGTGGCGAGGGCGGCGGAGATGG
AGGCGGCGCGCGCCACGCTGAGGGCCAACCCCGAGAGCGTCGTGTCCAGGTCAGAGTACGCCGCGCTCTGCATCGACATT
GCGGGCGGCGAGGAGGGCGGGCGCAAGCTCGCCGTGGCGCTCGACGAGTCCGGCGTCGTCATCGTCCTCGCCGACGCCGT
CTTCCTCCGCCCCGACCAGGTTGCGAAGGCGATCGGGAGCATGCTGCCGTCGCCGGCGCGAGCAGCAGCCGCGGGCGACG
ACGTCGAGGCGCGCAAGCTGGAGCTGCGGGCGCTGGAGCGGCAGAAGGCGGCCATCGACGCCAAGGCGGCGGCGCAGGTG
CGGCGGGAGCTGTGGTGCGGGCTGGGCCTGCTGGCGGCACAGACGCTGGGGTTCATGCGGCTCACCTTCTGGGAGCTGTC
GTGGGACGTGATGGAGCCCGTGTGCTTCTACGTCACGTCCATCTACTTCATGTCCGGCTACACCTTCTTCATGAGGACGG
CCACGGAGCCGTCCTTCGAGGGCTTCTACCGGAGCCGCTTCGCGACGAGGCAGCGCCGCCTCATGCGCGCCCGCCAGTTC
GACGTCGCCCGGTACAACGCTCTGAAGCAAGCGGAGCTGCGCGGCGTG------TCCGGTTCTGTGGCACAAAGCGATCA
TGGCGAGTGCGATGCCGACGTGTTTAGGCACGCCACGCACGTACATCAGTAG----------------------------
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>chr4B_1_TraesCS4B01G236600
CGCCTTCATAGTTGACGGGAACGTCTCATCCCACTAAACGCACATCGCCGGAAAGGT--------------GAAAATGCA
AGCACGAGCGTCAAGTCTAGAACTTGAACCGTGGTGGACTAGGGATACCACTGTC-TCCTAACCATCCAACCACATGTTG
GTGCGCCATGTCTTTTGCTCTTGATATGTGCATGTTTTATTTGCAAAAAAAACACAATGTTTAATTTTAAAAGAAATCCC
ACTGTTATTTATATGCCTTTGTAATATGCTTGATTTAATATACACAAT-AG-----TTTTTCTTAAAATTATTACAATT-
TTTTCCCATGGCAACAAGACAGTAAGAAACACATGGAGTAAAGCATTTTTTTAGTAACTGTAAAT--AAAAAACAGATGT
TTGTTCCTTTTCTAACTCCGAAGCTAACGACCTCATGTTTTCATTCCCGTTTTCA-TTTGTTTCTAAACTATGGTTGAAA
CACGTGCACGGTTACTACTTACAACTTTGCGTAAGCGTAGCGGTAATATCTCCTCGCAGCAA-GATAAGCAACAAGCTGA
ATAAGGTAGTATGTTATGTTTGTTTGGAATGCTCCATCTGACTTGCGTGCCGAGCTGACCGGGTTTCCAAGAAAAGAAAA
ACAAACTAAACGAACTTGCAGTTCGCGGTTTCGCCTAACGCGTTGGTCACATTTTTGTACGACCTCTCGCCGCACAGAG-
-------TCACGACATACGTGTCGTCGCCATCTGAATTAGTCAGC---ACTACCACATGTCTCCAGCTCCGACGAGCTGG
CCT-----------------------------------------------------------------------------
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-------------------------------CTAAATCGCGCGTCTAGCTAGCCGATGAATCCATGTCAGCGCCACATTC
ATTCCTCGTTTTTAATTGCCTGGATTTCGGCTAGTAAAACGCGGCTCTATCCGCCGCGTCACACTA--GCCCGGTATAAA
TACCCCGCCCCGTTCCCCCATTCCGGCT----CACC----CACCAAACATCCCAGCTCGAGCTCTCGTCTCTGTCACGTA
CCACAAAGCCGGGA----AAACTCGTGCCACCAAGAAAAATGGCGTTCCGCAGAACCATCGCACGGAGCATATGGGCAGC
CAAGAACGCGGCCACCTGCGCCGCCGCCGTGCCCAAGCCCAAGCCCCCGCCTCCCATTCTCCCGGCGCGCCGGACGCTGC
CGGTGGTGGAGGACTGCCCGACGCTCGCATTCCTGCGCCCGCGCCCGGCCACCGCCCGCTACTCCACCGTCTCCGTCCCG
CTCCCGCACCACTGCTTCCCCGCCTTCCCCGTCGGCGACCAGCTGTTCAACCGCCTCGTCGACGGGCTCACGCCGCCGCC
TGCCGCCGTGCCGTGGAGGCCCGGGGAGACGGGCGTGACGCTGCACGAGGCGAGGAAGGTGGCGAGGGCGGCGGAGATGG
AGGCGGCGCGCGCCACGCTGAGGGCCAACCCCGAGAGCGTCGTGTCCAGGTCAGAGTACGCCGCGCTCTGCATCGACATT
GCGGGCGGCGAGGAGGGCGGGCGCAAGCTCGCCGTGGCGCTCGACGAGTCCGGCGTCGTCATCGTCCTCGCCGACGCCGT
CTTCCTCCGCCCCGACCAGGTTGCGAAGGCGATCGGGAGCATGCTGCCGTCGCCGGCGCGAGCAGCAGCCGCGGGCGACG
ACGTCGAGGCGCGCAAGCTGGAGCTGCGGGCGCTGGAGCGGCAGAAGGCGGCCATCGACGCCAAGGCGGCGGCGCAGGTG
CGGCGGGAGCTGTGGTGCGGGCTGGGCCTGCTGGCGGCACAGACGCTGGGGTTCATGCGGCTCACCTTCTGGGAGCTGTC
GTGGGACGTGATGGAGCCCGTGTGCTTCTACGTCACGTCCATCTACTTCATGTCCGGCTACACCTTCTTCATGAGGACGG
CCACGGAGCCGTCCTTCGAGGGCTTCTACCGGAGCCGCTTCGCGACGAGGCAGCGCCGCCTCATGCGCGCCCGCCAGTTC
GACGTCGCCCGGTACAACGCTCTGAAGCAAGCGGAGCTGCGCGGCGTG------TCCGGTTCTGTGGCACAAAGCGATCA
TGGCGAGTGCGATGCCGACGTGTTTAGGCACGCCACGCACGTACATCAGTAGCGCCGTTCTTCTAAAGAACTCTGGTACA
GACTAACTAGTTTGAGACGTAGTAC------------AAAAAACTAGTTTGAGACGTGTAGATTGTAGAGTCCAGTGCTT
ATCTGGACTCACCGATTCATGATCCATGGCACAAAAAATTCACCGATGTTTGAGTTTGTTTATAACTTGTA--TAGTGAT
GGTAAAATTCACCATTTTATCGTGAAAAC-TGAATCGAACATTTTTATGTTCAAAAAGGTGAACGTGCACTGTTTTGATT
ATTTTTTTGTTGAGAAAATTTCTGTTTTGATTCTCAAAGGAAAAACATCTCCGTTTTGGGGTGTCAGCCTGTCACAACTC
GTGTACACAGTTAGACCTGGCCATCCTCCGGGCCGGGCCTGACCAAGCCCGAGGTAGAAAACTCAGGCCCGAGCCCGGCC
CGGCCCGGCTGTCGGGCCTAGTTTTCAGGCCCAAGCCCGGCCCATCACAGCAAAAACACGTCGGGCCTCGGGCCTTGGGC
CGGGCCTCTTCAGTAAATGGCATAAACAGTGGGCTCAGGCCCGGCCCGACCTAGTCTTCGGGCTCAAAACCTAGGCCTAG
GCCCGGCCCGGGAGCAGCGTCGGGCCGGGCTTTTTCGGGCCGGGCTGTCCGGGCCGGGCGGCCCATGGCCAGGACTATAC
ACAGTACACGCTATTGGAATGGACTGAGATGGCCCGTCCCGCTGGTTTTGTTCATAGGCCAACTTCTCTTCCCAGGATTT
GTACAAAGAGAAAAAAAATCTCTGGAAGCAGTGCACTAGCGCGAGAGCTATTTCTCGCCTTAAGCGAGTTGAAAGAGGAT
CACTTGCTGAAGGGTCGACACTAATCAGGCCGCATATGCACAGTAAAAGGAAATAGAGCATGCCAGGTAATCAAATTGTG
GTCTCCAGCTTTCGAGCAACGGCGTCTGAGTGGTTTTCGCTGTTCTTTATTTATTTTTTGTTGGACCTCAATAAGTCCCG
AACGTTCGACTTTTAAGCATGCTAATC
>chr4A_2
-GCCTTCATAGTTTACGGGAACGTCTCCTCTCACTAAACGCATATCCCCAGAAGGTCTAAAATAAATATAAGAAAATGCG
AGCTCCAGCGTCAAGTCCAGGATTTAAACCCTGGTGGGCTAAGGATACCATCGTCGTCCTAACCATTCAACCATATGTTG
GTTCGTCATGTCTTTTGCTCTTGATATGTTCATGTTTTATTTGCAAAAAAAT-ACAATATTTAATTTTAAAAGAAATCCC
ATTGTCATTTATATGCGTTTGCAGTATGTTTGATTTAATATACACGAT-AGTTTTTTTTTTCTTAAAATGGTTACAATT-
TTCTCCCATGCTAACAAGACAGTAAGAAACACATGCAGCAAAACATTTTTT-AGTGACTGTAAATAAAAAAAACAGATGT
TTGTTCTTTTTCCAACTCCGGAGCTA-CGGCCTCACGTCTTCATTCCCGTTTCATTTTTGTTTCTAAATTATGGTCGAAA
CACGTGCACGGTTACTGCTTCCTTCTTTCCGTAAGCGCAACGGTAATATCTCCTCGCAGCAAAGATAAGCATCGAGCCGA
ATAAGGCAGTGTGTTATGTTTGTTCGGAATGCTCCATCTGACTTGCGTGCCGAGCTGGCCGGGTTTCCAAGAAAAGAAAA
ACGGACTAAACCAACTTGCAGTTCGCGGTTTTGCCTAACGCGTTGGTCACATTTTTGTACGCGACGCTGACCGAGCGAGC
AACAGACTCACACCGTACGTGTCGTCGCCATCTAAATTGGTCAGCACTACTACCACATGTCTCCAGCTCTCGCTAAGGCT
AGTCGTAATAATATCATAGCTAGTATCATGCATGACAATTAGACAATTTTGATAAGATGTCATAGACTTAAATAAACAAA
AAGAGGATTGAGTATCATATACTGTATCATAATAAATATTATGCTAATATATGTTATGCATGACAATAAATAAAGTACTA
CACCTTCTATTCGAAATTACTTGTCGCAAAAATGAATGTATCTAAACGTATTTTAGTTTTAGATACAACAATTTTTATGA
CAAGTAATTCTAGATGAATTAAGTACATGATACTATGCATTAGGAAGGTAGTATCATACACTAGTATCATATGCATGATA
CTAGTATATGATACTCTCCATTACAACCAGACTAATCCGCACGCCTGATTGGCCGATGAATCCAGGTCAGCGCCACATTC
AATCCCCGTTTTTAATTGCCTGGATTTCGGCTGGTAAAACGCGGCTCTATCCGCCGCGTCACACTATAGCCCGGTATAAA
TACCCCGCCCCGTCCCCCCATTCCGACCCACCCACC----AAACAAACATCCCAGCTCGAGCTCTCGTCTCTGTCACGTA
CCACAAAGCCGGGA----AAGCTCGTGCCTCCAAGAAAAATGGCGTTCCGCAGAACCATTGCACGGAGCATATGGGCAGC
CAAGAGCGCGGCCGCCAGCTCTGCCGCCGCGGT---GCCCAAGCCCCCGCCTCCCATCCTCCCGGCGAGGCGGACGCTGC
CGGTGGTGGAGGACTGCCCCACGCTCGCATTCCTGCGCCCGCGCCCGGCCACCGCCCGCTACTCCACCGTCTCCGTGCCG
CTCCCGCACCACTGCTTCCCCGCGTTCCCCGTCGGCGACCAGCTGTTCAACCGCCTCGTCGACGGGCTCACGCCGCCGCC
TGCCGCCGTGCCGTGGAGGCCCGGGGAGGCGGGGGTGACGCTGCAGGAGGCGAGGAAGGTGGCGAGGGCGGCGGAGATGG
AGGCCGCGCGCGCCACGCTGAGGGCCAACCCCGAGAGCGTCGTGTCCAGGTCAGAGTACGCCGCGCTCTGCGTCGACATT
GCGGGCGGCGCGGAGGGCGGGCGCAGGCTCGCCGGGGCGCTCGACGAGGCCGGCGCCGTCATCGTCCTCGCCGACGCCGT
CTTCCTCCGCCCCGACCAGGTGGCAAAGGCGATCGGGAGCATGCTGCCGGCGCCGGCGCGCGCGGCGGCCGCGGGCGACG
ACGTCGAGGCGCGCACGCGGGAGCTCGCGGCGCTGGAGCGGCAGAAGGCGGCCATCGACGCCAAGGCGGCGGCGCAGACG
CGGCGGGAGCTGTGGTGCGGGCTGGGCCTGCTGGCGGCGCAGACGCTGGGGTTCATGCGGCTCACCTTCTGGGAGCTGTC
GTGGGACGTGATGGAGCCCGTGTGCTTCTACGTCACCTCCATCTACTTCATGTCCGGCTACACCTTCTTCATGCGGACGG
CCATGGAACCCTCCTTCGAGGGCTTCTACCGGAGCCGCTTCGCGGCGAGGCAGCGCCGCCTCATGCGCGCCCGCCAGTTC
GACGTCGCCCGGTACAACGCGCTGAAGCAAGGGGAGCGGCGCGGCGTGTCCGGCTCCGGTTCTGTGGCACAAAGCGATCA
CGGCGAGTGCGATGCCGACGTGTTCAGGCACGCCACGCACGCACATCAGTAGCGCCGTTCTTCTAGGGAACTCTGGTACA
GGCTAACTACTTTGAGACGTAGTCGCAAAATGAAAAGAAAAAACTAGCTTGAGACGTGTAGTAG---------AGTGCTT
ATCAGGATTCACCGATTGAGGGTCCATGGCACAGAAAATTCACCGATGTTTGAGTTTGTTTATAACTTGTA--TAGTAAT
GGTAAAATTCACCATTTTATCGTGAAAAACTGGGTCGAACATTTGTATGTTGAAAAAGGTGAACGTGCACGTTT------
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>chr4D_75
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--------CGTCAAGTCTAGGACTTGAACCCTGGTGTGCTGGGGATATCAATGTCCTCCTAACCATCCAACCAAAGATTG
GTTCGCCATGTCTTTTGCTCTTGATATGTGCATGTTTTATTTGCAAAAAAAACACAATGGTTAATTTTAAAAGAAATCCC
ATTGTTATTTATATGCCTTTGTAATATGCTTGATTTAATATACACAATTAG-----TTTTTCTTAAAGTCGTTGCAATTA
TTTTCCCATGGCAACAAGACAGTAAGAAACACATGGAGTAAAACATTTTTTTAGTAACTGTAAAT--AAAAAACAGATGT
TTGTTCTTTTTCTAACTCTGGAGCTAACGGCCTCATGTTTTCA-------------TTTGTTTCTAAATTATGGTTGAAA
CACGTGCACGGTTACTACTTACTACTTTCTGTAAGCGTAACGGCAATATCTCCTCGCAGCAA-GATAAGCAACAAGCTGA
ATAAGGTGTGG---TATGTTTGTTTGGAATGCTCCATCTGACTTGCGTGCCGAGCTGACCGGGTTTCCAAGAAAAGAAAA
ACAGACTAAACGAACTTGCAGTTCGCGGTTTCGCCTAACGCGTTGGTCACATTTTTGTACGACCTCTCGCCGCACAGAG-
-------TCACAACGTACGTGTCGTCGCCATCGGAATTAGTCAGC---ACTACCGCATGTCTCCAGCTCCGACGAGCTGG
CCT-----------------------------------------------------------------------------
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-------------------------------CTGAACCGCACGCCTAGCTAGCCGATGAATCCAGGTCAGCGCCACATTC
AATCCTCGTTTTTAATTGCCTGGATTTCGGCTGGTAAAACGCGGCTCTATCCGCCGCGTCACACT--AGCCTGGTATAAA
TACCCCGCCCCGTCCCCCCATTCCGACT----CACCCACCCACCAAACATCCGAGCTCGAGCTCTCGTCTCTGTCACGTA
CCACAAACAAAGCCAGCGAAACTCGTGCCAGAAAGAAAAATGGCGTTCCGCAGAACCATTGCACGGAGCATATGGGCAGC
CAAGAACGCGGCCACCTGC---GCCGCCGCCGT---GCCCAAGCCCCCGCCTCCCATCCTCCCGGCGCGCCGGACGCTGC
CGGTGGTGGAGGACTGCCCCACGCTCGCATTCCTGCGCCCGCGCCCGGCCACCGCCCGCTACTCCACCGTCTCCGTCCCG
CTCCCGCACCACTGCTTCCCCGCCTTCCCCGTCGGCGACCAGCTGTTCAACCGCCTCGTCGACGGGCTCACGCCGCCGCC
TGCCGCCGTGCCGTGGAGGCCCGGGGAGACGGGCGTGACGCTGCAGGAGGCGAGGAAGGTGGCGAGGGCGGCGGAGATGG
AGGCGGCGCGCGCCACGCTGAGGGCCAACCCCCAGAGCGTCGTGTCCAGGTCAGAGTACGCGGCGCTCTGCGTCGACATT
GCGGGCGGCGCGGAGGGCGGGCGCAGGCTCGCCTCGGCGCTCGACGAGGCCGGTGTCGTCATCGTCCTCGCCGACGCCGT
CTTCCTACGCCCCGACCAGGTCGCGAAGGCGATCGGGAGCATGCTGCCGGCGCCGTCGCGGGCGGCGGCCGCGGGCGACG
ACGTCGAGGCGCGCACGCGGGAGCTGCAGGCGCTGGAGCGGCAGAAGGCGGTCATCGACGCCAAGGCAGCGGCGCAGGTG
CGGCGGGAGCTGTGGTGCGGGCTGGGCCTGCTGGCGGCGCAGACGCTGGGGTTCATGCGGCTCACCTTCTGGGAGCTGTC
GTGGGACGTGATGGAGCCCGTGTGCTTCTACGTCACGTCCATCTACTTCATGTCCGGCTACACCTTCTTCATGCGGACGG
CCACGGAGCCGTCCTTCGAGGGCTTCTACCGGAGCCGCTTCGCCACGAGGCAGCGCCGCCTCATGCGGGCCCGCCAGTTC
GACGTCGCCCGGTACAACGCTCTGAAGCAAGGCGAGCGGCGCGGC------GGCTCCGGCTCTGCCGGGCAGAGCGATCA
CGGCGAGTGCGACGCCGACGTGCTTAGGCACGCCACGCACGCACATCAGTAGCGTCTAGGAAC-------CTCTGGTACA
GGCTAACTAGTTTGAGACGTAGTCGCAAAAAGAAAAA-----------TTGAGACGTGTAGATTATAGGGTCCAGTGCTT
ATCAGGATTCACCGATTCAGGGTCCATGGCACAAAAAATTCAACGATGTTTGAGTTTGTTTATATATAACTAGTAGCAAT
TGTAAAATTCACCATTTTATCGTGAAAAT-TGGATCGAACATTTGTATGTTCAAAAAGGTGAACGTGCAC----------
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>SNPs
S------------S-------------S--S-----------S---S--S---S-SS----------------------S
---S-S--------------S---------S------S------------S----------------------S------
--S-----------------------------------------------------------------------------
-S-------------------------------------------------------------------SS---------
------------------------------------------S-------------------------------------
------S-------------S--------S----------------------SSS-------------S-----------
----------------------S-----S----------S----------------------------------------
----------S---------------------------------------------------------------------
---S----------------------------------------------------------------------------
-----------S--S-----------------------------------------------------------------
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------------------------------------S---S--S--------------------S---------------
-S------------------------------S-----------------------------------------------
-------------S-----------S------------------------------------------------------
-----------------------------------------------------------S--------------------
-------------------S-S-------S-SSSSS---------------------S----------------------
-------------------S------------------------------------------------------------
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---------------------------------------------S----------------------------------
-----------------------------------------------------------------------S--------
----------S--------------S--------S-------------S-------------------------------
---------------------S---------------------------S----------S--S--S-------------
---------------S--S--------S----------------------------------------------------
--------------------------------------S-----------------------------------------
-------------------------------------------------------------------------S------
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-------------------------------S-----S------------------------------------------
S----------------------------------------S-----------------------SS-------------
-S---------------------SS----------------------S----------------S---S-----------
---S---S-----------S-S-------------------------------------------------------S--
----------------------------S---S-----------S-------------------------SS--SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1157
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-----------------CGACGAGCTGGCCTCTAAAT-------------------------------------------
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>reverse_2959
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------------------------------------------------------------------------------GC
CGGGCCTCTTCAGTAAAT--------------------------------------------------------------
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