>input_sequence_62259
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---------------------------------------------------ATGGCGTCGTCGGATTCTCCGCCGCCGCC
GGGGAAGCCCCCTCTGCCGTGGCGGGTGCGCCTGCTCGTGGGCGCAGCCTCATTCCTACACTCCGCGTCCCTCCGCGCCG
ACGGCACCGTCAACCGCTCCCTCCTCTCCCTATTCGAACGCACCGTCCCGCCTAGCCCCGCACCCGATGCCGCCGGCGTT
TCGTCCACCGACCACGCCGTCTCCAGCCACCTCCGCGTCCGCCTGTTCGTTCCAGCGCCCGCCGCTAGCGGC------AG
CCAGCTGCCAGTGGTTGTATATTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGACGGCCCAGTTCGACGCTCTGT
GCCGCCGCCTCGCCGCGTCCATCCCAGCCGTCGTCGCCTCCGTGGACTACCGCCTCGCGCCCGAGCACCGCGCCCCGTCC
GCTTACGACGACGGCGAGGCCGCCCTCCGCTGGGCACTCGCCGGCGCCGGGGGCGCCTTGCCGTCTCCCCCCACCGCCGT
CTTTGTCGCCGGGGATAGCGCGGGCGGCAACGTCGCCCACCACGTCGCCGCACGCCTGCAGCGCAGCGTGGCCGGGCTGG
TCCTACTGCAGCCGTTCTTCGGCGGCGAGGCGCAGACCGCGTCCGAGCGACGGCTCCGCCACGCGCCGTTCGGGGCGCCG
GAGCGGCTGGCGTGGCTGTGGCGCGCGTTCCTGCCGCCGGGCGCCACGCGGGACCACGAGTGGGCCAACGTGCCGGCCGC
GATCCAGCGCGACGGTG---CCGCCGCGGGGAAGTGGCGCGCGTTCCCGCCGACGCTGGTGTGCGTGGGCGGGTGGGACG
TGCACCAGGACAGGCAGAGGGAGTACGCGCACGCGCTGCAAGCCGCCGGCGCCGAGGAGGTCCGCGTCGCGGAGTTCCCC
GACGCCATCCACGCGTTCTACGTGTTCGAGGGCCTCGCGGACAGGCAGAGACTGCTGGCCGATGTGGCCGAGTTCGTGAA
CCGGCGAGCCGCCGAACACCTTGACGCGCCAGTGAACGACCAGTGTCCACTGTCCACTGGTTCGTAG-------------
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>chr2B_1_TraesCS2B01G199700
AGGTACATCAACTCTTGTAACCCTTATACCCTCAAATATAATCAAGCAGGAGTAGGGTTTTACCTCCATTAAGAGGGCCT
GAACCTGGGTAAATATTGTGTCCCTTCTCCATTGTTACCGTTGATCTTCAGACGCACAGCTTGGGCCCCCCTACCCGAGA
TCTTCCGGTTTTGACACTGACACCCGCCGCAGCCAACCCACGTCGGGGCTTTGTCCGGCAGGGACTACGGGTGGCGGTGA
GGGAAGGGGCGAAGGAGGAGGGACCGATGGCGGCAAGACTAGGGATCAGAGGTAGATCCAGGACCCAGGCCGTGGGGGCC
TGGGCCTGGGGCGTGAGGATGAACTACTTCGTCTACTGTAGACTACTGCACACTGTAGCGACACTGTAGAGGCCACTGTA
GCATCCTGGGCCCTGGGTGTGGCCCAATCCTGGGTCCGCCCTGGCTAGGGATCAACAACTCTATTGACTTTAGGAATAAA
AAATTGCAAACAAAGGTTAGGTGGGCGTTAGTTGATCCCATCAAATTGCAAGGTAAAACCATCCTCTAGCTAACTTTTTT
TTTTTGCGGGATCTTCTAGCTAACAAGACCCTAACCTTTGCCTCGACGGTTCGAGGCTATCAATTTGATAGAGCTACTCC
TAGTGACAATATTGGCACATCTAAGTTTATGAAGGCATTAATCTATCATACTCCTAGTGTGACCAACTGACCATCCTCTT
TGCGGCCTCATGAATTAGGACAAGTGGTCAAATGGAGACTATTGATGAGGGTTAGGGGAACCAATGACTAGCAACCGTGA
ACCAAAGACGCAACGCTAATCTTGCTGGCCTTGGACATAAACGCAAATGCAAGCTTGACACTGAACTTGAGATTGTTCAG
TTCCTCTCTGCGCCAATAGAGTACAGTACTACAACTGTACAAGAAACGCTCGGTGTCCGCTCATAAACATTATCCCCACC
AACT--------CCAAGGGGCACCCGGACGGCCGGAAACTGA---GCAGAGATGGCGTCGTCGGATTCTCCGCCGCCGCC
GGGGAAGCCCCCTCTGCCGTGGCGGGTGCGCCTGCTCGTGGGCGCAGCCTCATTCCTACACTCCGCGTCCCTCCGCGCCG
ACGGCACCGTCAACCGCTCCCTCCTCTCCCTATTCGAACGCACCGTCCCGCCTAGCCCCGCACCCGATGCCGCCGGCGTT
TCGTCCACCGACCACGCCGTCTCCAGCCACCTCCGCGTCCGCCTGTTCGTTCCAGCGCCCGCCGCTAGCGGC------AG
CCAGCTGCCAGTGGTTGTATATTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGACGGCCCAGTTCGACGCTCTGT
GCCGCCGCCTCGCCGCGTCCATCCCAGCCGTCGTCGCCTCCGTGGACTACCGCCTCGCGCCCGAGCACCGCGCCCCGTCC
GCTTACGACGACGGCGAGGCCGCCCTCCGCTGGGCACTCGCCGGCGCCGGGGGCGCCTTGCCGTCTCCCCCCACCGCCGT
CTTTGTCGCCGGGGATAGCGCGGGCGGCAACGTCGCCCACCACGTCGCCGCACGCCTGCAGCGCAGCGTGGCCGGGCTGG
TCCTACTGCAGCCGTTCTTCGGCGGCGAGGCGCAGACCGCGTCCGAGCGACGGCTCCGCCACGCGCCGTTCGGGGCGCCG
GAGCGGCTGGCGTGGCTGTGGCGCGCGTTCCTGCCGCCGGGCGCCACGCGGGACCACGAGTGGGCCAACGTGCCGGCCGC
GATCCAGCGCGACGGTG---CCGCCGCGGGGAAGTGGCGCGCGTTCCCGCCGACGCTGGTGTGCGTGGGCGGGTGGGACG
TGCACCAGGACAGGCAGAGGGAGTACGCGCACGCGCTGCAAGCCGCCGGCGCCGAGGAGGTCCGCGTCGCGGAGTTCCCC
GACGCCATCCACGCGTTCTACGTGTTCGAGGGCCTCGCGGACAGGCAGAGACTGCTGGCCGATGTGGCCGAGTTCGTGAA
CCGGCGAGCCGCCGAACACCTTGACGCGCCAGTGAACGACCAGTGTCCACTGTCCACTGGTTCGTAGTTGGTTTGCAGTT
CAGTCAGTGTGAGTGTGTGACTGATCTTTTTAATTTTTTTTGGTAAGTGTTGATTCTTGGAGCTGTGATGTGTGTGACGA
CGGAACTTGAGGGCACATGCGATGCACTGTACTCATGACGAGCATGCCTGGTTCCC------------------------
--------------------TGTGAACGAGTTGTTCGTTGGTTCTGAGAAGCAGGGAAT-----TGGACGCAAGCGTCGA
CAGCGCAATGAACGGCATTCATCGCGCAAACAGGGTCGTGTTTGG----------CGGCGTTCCTGTCACGGAG------
------------AGGTTATCGCCCATGCGAACC-AGACAGTAATGGTGCGACGACGCGGACAGATCCACTGTACGTTGGC
CCCCGATTTGGCGAGTGCCAGCATGGGCCGAGCATCTTGAGCAGTTGAGCTACCAGTCTCTGCTGGAATATCTGAAGAGC
ATGACACACCGCCCGCCACATCCATATCCAGCCGGAGCATTCTCGACGCCCGCGCTTCTGGCCGCCGCGCGCTGGCCCCA
CGCCTTGTCGTGGCCATGCGCCAGTGCACCGCCCCAGTGCCAGAGCGCGCGCCCGTGTCCCGACAGGCCGGCACAGAGCA
CGCGTGTGCGCAGCGGCTGCACCGGCACGATGCTGTGTCCGTCCGTGGCTGTGCGATGAGCTGTTTTTCATTGTCAGGCA
TTCAGGATTTGAATCAACTTCAGATGCATCAAGAATTCAACATAGGATATATAGAAAAATCTCTGCTAAGTGGCTGTCAT
CAGTTCCTGGCCGGCGGTAGCAGCTTGCAGCATCAAGCACCGGAAAAGGAGGCCGACATTTATTCG-AACAGAAGCCTGT
TTAGCTGCCGACTGAACTGA------------------------------------------------------------
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---------------------------------------------------------------------AGGTAGCCGGG
GCTTCCGGCCGAAGACATTTCTGCCTTTCCAACGATACGAGGGTCCAGACCAGCTTTACGCCTCCAAAAGAGGGAGACGC
CACCGGCCTCCTTCCATGATGACCCCTTTCTCTGATGAAAAGCTCGCCGCGTTTTCCCCCGAACATTCATATGAT
>chr2A_843
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------------------------------------------GCAAATGCAAGCTTGACACTGAGCTTGAGATTGTTCGG
TTCCTCCTTGCGCCAATAGAGTACAGTA-----------TAAGAAACACTCGGTGTCTGCTCGTAAACCTTATCGCCACC
AAACTCCAAGGACCAAGCGGCACCCGGACGGCCGGAAACTGAGCTGCAGAGATGGCGTCGTCGGATTCT---CCGCCGCC
GGGGAAGCCCCCTCTGCCGTGGCGGGTGCGCCTGCTCGTGGGCGCAGCCTCATTCCTACACTCCGCGTCCCTCCGCGCCG
ACGGCACCGTCAACCGCTCCCTCCTCTCCCTGTTCGAACGCACCGTCCCTCCTAGCTCCGCGCCCGATGCCGCCGGCGTT
TCGTCCACCGACCACGCCGTCCTCAGCCACCTCCGCGTCCGCCTGTTCGTTCCAGCGCCCGCCGCTAGCGGCAGCCAGAG
CCAGCTGCCAGTGGTTGTATATTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGACGGCCCAGTTCGACGCTCTGT
GCCGCCGCCTCGCCGCGTCTATCCCGGCCGTCGTCGCCTCCGTGGACTACCGCCTCGCGCCCGAGCACCGCGCCCCTTCC
GCTTACGACGACGGGGAGGCGGCGCTCCGCTGGGCACTCGCCGGCGCCGGGGGCGCCTTGCCGTCTCCCCCCACCGCCGT
CTTTGTCGCCGGGGATAGCGCGGGCGGCAACGTCGCCCACCACGTCGCCGCGCGCCTGCAGGGCAGCGTGGCCGGGCTGG
TCCTGCTGCAGCCGTTCTTCGGCGGCGAGGCGGCGACCGCGTCCGAGCAGCGGCTCCGCCACGCGCCGTTCGGGGCGCCG
GAGCGGCTGGCGTGGCTGTGGCGCGCGTTCCTGCCGCCGGGCGCCACGCGGGACCACGAGTCGGCCAACGTGCCGGCCGC
GATCCAGCGCGACGGTG---CCGCCGCGGGGAGGTGGCGCGCGTTCCCGCCGACGCTGGTGTGCGTGGGCGGGTGGGACG
TGCACCAGGACAGGCAAAGGGCGTACGCGCACGCGCTGCGAGCCGCCGGCGCCGAGGAGGTCCGTGTCGCGGAGTTCCCC
GACGCCATCCACGCGTTCTACGTGTTCGACGGCTTCCCGGACAGCCAGAGGCTGCTGGCCGACGTGGCCGAGTTCGTGAA
CCGGCGGGCTGCCGAACACCTCGACGCGCCAGTGAACGACCAGTGTCCACTGTCCACTGGTTCGTAGTTGGTTTGCAGTT
CAGTCAGTGTGACTGATT------TTTTTTTAGAATTTTTGGTAAAGTGTTGATTCTTCGAGCTGTGAGGTGTGTGACGA
CGGAACTTGA-GGCACATGCGATG-----CACTGATGATGAACATGTCCGGTTCCTAG--------TGACTGATTGCGTT
GCATGGCACGGTGTGGATCGTGTGAACGAGTTGTTCGTTGGTTCTAAAAAACAGGAAATTCGAGTGGACGCAAGCGTCGA
CAGCGCGATGAACGGCATTCATGGCGCAAACAGGGTCGTGTTTGGTCGTACGTATCGGCGTTCCTGTCACGGAGCAGGCG
GCCAGGCACGAGAGGTTCCCGCCCATGCGACCC-AGACCGTAATGGTGCGACGACGCGGACAGATCCACTGTACGTTGGC
CCCCGATTTGGCGAGTGCCAGCATGGGCCGAGCATCTTGAGCAGTTGAGCTACCAGTCTCCGCTGGAATATCTGAAGAGA
ATGACACACCGCCCGCCGCGG-CATATCCAGCCGGAGCATTCTCGGCGCCCGCGCTTCTGGCCGCCGCGCGCTGGCCCCG
CGCCTTGTCGTGGGCGCGCGCCAGTGCACCGCCCCAGTGCCAGAGCGCGCGCCCGTGTCCCGGCAGGCCGGCACAGAGCA
CGCGTGTGCGCAGTGGCAGCACCGGCACGATGCTGTGTCCGTCCGTGGCTGTGCGATGAGCTGTTCTTCATTGTCAGGCA
TTCAGGATTTGAATCAACTTCAGATGCATCGAGAATTCAATATAGGATATACAGAAAGATCTCTGCTAAGTGGCTGTCAT
GAGTTCCTGTCGGGAGATAGCAGCTTGC----TCAAGCACCGGAAAAGGAGGCCGACATTTATTCTCAACAGAAGCCTGT
TTAGGCCTCCTTTGGTTTGGAGGAATTTTATAGGAATTTTAGAGGATATGATTTTTATAGAATTTTTTGCTTTAGAGTCC
TTTGGTTCGTAGGAATAGATTTTTATTCCTACATAGGATTGGTTCCTATCCTACGTATTTCATAGGAAAATAAAAATGAG
CCTAGACTCAATGGGAAAATTCTTTGGTGTCAATCAAATGACATCTCGTTTCCTATTCCTACTCATAGGATTTGAGATAC
ATGACCATCTTATTTCCTACAAAATTCCTATTCCTATAATATTCTTATCCTATGAACCAAAAGAGGCCTAGGTAGCCGGG
GCTTCCGGCCGGAGACATTT--GCCTTTCCAACGATACAAGGGCCCAGACCAGCTTTACGCCTCCAAAGGTGAGAGACGC
CAGCGGCCTCCTTCCATGATGACCCCTTTCTCTGATGAAAAGCTCGTCGTGTTCTCCCCCGAACATT--------
>chr2D_843
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------------------------------------------GCAAATGCAAGCTTGACACTGAGCTTGAGATTGTTCAG
TTCCTCCCTGCGCCAATAGAGTACAGTA-----------CAAGAAACACTCGGTGTCCGCTCGTAAACCTTATCACCACC
AACT--------CCAAGGGGCACCCGGACGGCCGGAAACTGAGG---AGAGATGGCGTCGTCGGATTCT---CCGCCGCC
GGGGAAGCCCCCTCTGCCGTGGCGGGTGCGCCTGCTCGTGGGCGCAGCCTCATTCCTACACTCCGCGTCCCTCCGCGCCG
ACGGCACCGTCAACCGCTCCCTCCTCTCCCTGTTCGAACGCACCGTCCCGCCTAGCCCCGCACCCGATGCCGCCGGCGTT
TCGTCCACCGACCACGCCGTCTCCAGCCACCTGCGCGTCCGCCTGTTCGTCCCAGCGCCCGCCGCTAGCGGC------AG
CCAGCTGCCAATGGTTGTGTATTTCCACGGCGGCGGCTTCGTGTTCCACTCCGTGGCGACGGCCCAGTTCGACGCCCTGT
GCCGCCGCCTCGCCGCGTCCATCCCGGCCGTCGTCGCCTCCGTGGACTACCGCCTCGCGCCCGAGCACCGCGCCCCTTCC
GCCTACGACGACGGGGAGGCGGCGCTCCGCTGGGCACTCGCCGGCGCCGGGGGCGCCTTGCCGTCTCCCCCCACCGCCGT
CTTCGTCGCCGGGGATAGCGCGGGCGGCAACGTCGCCCACCACGTCGCCGCGCGCCTGCAGCGCGACGTGGCCGGGTTGG
TCCTGCTGCAGCCGTTCTTCGGCGGCGAGGCGCGGACAGCGTCGGAGCAGCGGCTCTTCCACGCGCCGTTCGGGTCGCCG
GAGCGGCTGGCCTGGCTGTGGCGCGCGTTCCTGCCGCCGGGCGCCACGCGGGACCACGAGTCGGCCAACGTGCCGGACGC
GATCCAGCGCGACGGTGCCACCGCCGCGGGGAGGTGGCGCGCGTTCCCGCCGACGCTGGTGTGCGTGGGCGGGTGGGACG
TGCACCAGGACAGGCAGAGGGCGTACGCGAACGCGCTGCGAGCCGCCGGCGCCGAGGAGGTCCGCGTCGCGGAGTTCCCC
GACGCCATCCACGCGTTCTACCTCTTCGAGGGCCTCGCGGACAGCCAGAGGCTGCTGGCCGACGTGGCCGAGTTCGTGAA
CAGGCGGGCCGCCGAACACCTCGACGCGCCAGTGAACGACCAGTGTCCACTGTCCACTGGTTCGTAGTTGGTTTGCAGTT
CAGTCAGTGTGAGTGTGTGACTGATCTTTAAAAAAAAA--TGGTAAGTGTTGATTCTTCGAGCTGTGATGCGTGTGACGA
CGGAACTTGAGGGCACATGCGATG-----TACTCATGACGAACATGCCTGGTTCCCAGTGATTGTCTGGCTGATTGCATT
GCATGGCACGGGGTGGATCGTGTGAACGAGTTGTTCGTTGATTCTGAGAAACAGGGAAT-----TGGACGCAAGCGTCGA
CAGCGCGATGAACGGCATTCATGGCGCAAACAGGGCCGTGTTTGG----------CGGCGTTCCTGTCACGGAGCAGGCA
GCCAGGCACGAGAGGTTCTCGCCCATGCGAACTTAGACAGTAATGGAGCGACGACGCTGACAGATCCACTGTACGTTGGC
CCCCGATTTGGCGAGTGCCAGCATGGGCCGAGCATCTTGAGCAGTTGAGCTAACAGTCTCTGCTGGAATATCTGAAGAGA
ATGACACACCGCCCGTCACA-CCATATCCAGCCGGAGCATTCTGGACGCCC--GCTTCTGGCCGCCGCGCGCTGGCCCCG
CGCCTTGTCGTGGCCATGCGCCAGTGCACCGCCCCAGTGCCAGAGCGCGCGCCCGTGTCCCGGCAGGCCGGCACAGAGCA
CGCGTGTGCGCAGTGGCAGCACCGGCACGATGCTGTGTCCGTCCGTGGCTGTGCGATGAGCTGTTTTTCATTGTCAGGCA
TT-AGGATTTGAATCAACTTCAGATGCATCAAGAATTCAACATAGGATATATAAAAAAATCTCTGCTAAGTGGCTGTCAT
GAGTTCCTGGCCGGCGATAGCAGCTTGCAGCATCAAGCACCGGAAAAGGAGGCCGACATTTATTCGCAACAGAAGCCTGT
TTAGCTGCTGACTGAACTGA------------------------------------------------------------
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---------------------------------------------------------------------AGGTGGCCGGG
GCTTCCGGCCGGAGACATTT--GCCTTTCCAACGATACGAGGGTCCAGACCAGCTTTACGCCTCCAAAAGAGAGAGACGC
CAGCGGCCTCCTTCCATGATGATCCCTTTCTCTGGTGAAAAGCTCGCCGTGTTTTCCCCCGAACATTCATATGAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S---------------
------S---------------------SSSSSSSSSSS--------S--------------S-----S-----S-----
---------------------------------------------------------------------SSS--------
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-------------------------------S------------------------------------------------
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-------------------------S--------------------------------------------------S---
--------------S-----S--S--------------------------------------------------------
---------------------------------------------------S----------------------------
----S----------------------------S--------------SS------------------------------
-------------------------------------------------------------S------------------
--------------------------------S-----------------------------------------------
---------------------S-----------------S----------------------------------------
--------------------------------------------S-----S-----------S-----------------
------S--------------S----------------------------------------------------------
---------------------------------SS-----------------------S---------------------
------------------------SSSSS------------S--------------------------------------
--------------------------------------------------S-----------------------------
------S---------------S---------------------------------------------------------
-----------------S--------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------S----------------------------------------------------------S
--------------------------------------------------------------S-----------------
-------------S---S--------------------------------------------------------------
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S---------------S---------------------------------------------------------------
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-----------S--------SS--------------------------------------------------S-------
--S----------------------------------------------S-------------------------
>forward_187
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-------GTTTTGACACTGACACCCGC-----------------------------------------------------
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>reverse_2139
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----------------------------------------------------------GGAGCTGTGATGTGTGTGAC--
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