>input_sequence_62236
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-------------ATGGCTGACAAACAGAACAACAAGGGGAAGGAGAAGATGCGCTGCTCGGACTCGCTGTCCGAC----
--GATTCAGATTCAGTACGGCCCTGCAAGAGGCCCCGGCGGCCGGCTCCAGAGACCACCCCGGAGCAGCCGGTATGATCC
TGTCGAATTCTCGCTTGTAGGATCGATTCTGTTGGTAGAAAGGCCGTATGCGA--TTTATCTTCTGCGTTGCAATTCTGT
GCTAGCGGATTCTAGGGCTA-T-TTTTTCTGTGATGTTTCTTGAGATGGTTTCTTGTTCTGGGTAATTTCTGCCTTAAAT
TTTTTTTTTGTCTCGAAGAACTCCAGATCTTATGGATTTCTGATAGATTTTATCAGTCAACTCCGTGGACTGAA-AAAAG
GGCTTGCCCTGAATTTTCATCCAATCCCTGAACTAGTTGACATTATGGGGCAAAACAACTCACAAAACCAATAGACAAAA
ATCTCGTGT---------GCTCCAACTCTGGCATGGCAGTCTTTTTTAGATTGCAGCAGAGAGA----------ACCTGA
TCTGATCTTTTTTTTTTCCGAATGGAACCTGATCTGATCTGTACAACTATCT--AACACTCCTAAATTTGGCAGAGCGCA
CAAGGTTCCCTGAAAATCAGGGATCGTAAGGGATGGCAGCATGGTA------TCATCATCGACGGAAACAGAAACTGGAA
GTGCAAGTACTGCCCCATGGTTGGGCGCAGCGGCGGCGTCACCAGCCTCAAGCATCATGTTGCTGGTGGCAGCACCAGGG
TAAGGGCCTGCCCATCTGCTCCTAAACATGTCTCCAAGGAGGTGAAAC----GTTGGTTGGACAGTAGAAGGCGGAAACC
---AAAGTGGACTGCACGAAAAGG--GACTGTTGTGCAGCCGGCAATGGCCACAA--CCACTGACCCCAAGAACCCTGTA
CCCAGCAATTC---------------------------GACACAAGGTTCTGATGAAAACAGTGCATTCCCCTCCCCAGC
ATCATTCATGACACCTCTTGTGGACATGATGCTTGCTGCCGCGGAGGTGCTGAGGGCGGAGG---AGGAGCAGGCCAAGG
ACTCTGAAAAGAAGCCATGA------------------------------------------------------------
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>chr3D_1_TraesCS3D01G401500
CACTATGTGTTGGCATCGCTTATGCCAGATACATCCATTTGAGGGATAAACTTGGGACAAACTTTCTCGGACGGAGGGAG
TACATGTTAACAACCATTTGCAACGTCAAGCAGTTCACAAAGATGCTTTTTTTTGTTTTGGTTTTGCATGGGCACAGAGA
TAATTACTTGAGGAAGAACGGTCAGAAGTCCACAGTACTGTGAATGTATTCGTAGCTCTCGCTTGTATCTTTCTTGTAGC
TTCACT-----------------------------------TGTAAATCAGGTTGACTCAAAAAATTGCAAACAAGAAGG
TGTGCTGCAACATCTCCATGCTTTTTCCAGTAATTTTG-TTGGTTCAGGCCAATCTGTTAACAGTCAATCTGTCACGTCC
AGCCAAGCAAATTT------------------------------------TTGTCCATATCAATTAACACCCGAACTTTT
TAACCAAAGAGACAGCTTGAGATGGGA-TGCCTCCAACTCTAATTTGTTGGTACGAAACGATGGAAGGAAAAACTTTACT
GCCTTCCCAAATTTGTTTACG-----------------------------------------------------------
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----------------------------------------------------------------------------AAAA
TACCACTGTAAAGCACTT-GATACGGAGGGAGAGCGTAGAACCACCAACGAATGGATACAT--TACATGCACCTTGAAAA
GATAACTTGTCCACGTCACGGATCCGGGTGCTCTGTAGAAAGTAGCCGTTGATAATTCCAGGCAGGAAATTAAAGCTTAC
CACAAGTTACAGGACTGCTAATCTGTACGTAGAAAGAAACACAGGCGCGCGAACAGATTTAGAAGAAAACACATCTGGCG
CCCGGTGATGAATTCATAGTCAAGAATAGAAAGGCAATACTCCTGGGACTTTAAAAGGAGATGCTAGGCGCCAAGTTTGT
CACCAGGCATTGCCGGATCATCTACCGTCAGCCCTCCTCTCCGACGCTTTCTGTTCAGGTTGCAAATTT-TCTTCTCATT
ATCTTTCGTTGGGTAGTGGATAGTGGT-GTAGTAGTGACAATTTCGGTTGGATTTGATGCAGGATCCTCGTTTCTGGGTC
GAAACTTTTGTAGATGGCTGACAAACAGAACAACAAGGGGAAGGAGAAGATGCGCTGCTCGGACTCGCTGTCCGAC----
--GATTCAGATTCAGTACGGCCCTGCAAGAGGCCCCGGCGGCCGGCTCCAGAGACCACCCCGGAGCAGCCGGTATGATCC
TGTCGAATTCTCGCTTGTAGGATCGATTCTGTTGGTAGAAAGGCCGTATGCGA--TTTATCTTCTGCGTTGCAATTCTGT
GCTAGCGGATTCTAGGGCTA-T-TTTTTCTGTGATGTTTCTTGAGATGGTTTCTTGTTCTGGGTAATTTCTGCCTTAAAT
TTTTTTTTTGTCTCGAAGAACTCCAGATCTTATGGATTTCTGATAGATTTTATCAGTCAACTCCGTGGACTGAA-AAAAG
GGCTTGCCCTGAATTTTCATCCAATCCCTGAACTAGTTGACATTATGGGGCAAAACAACTCACAAAACCAATAGACAAAA
ATCTCGTGT---------GCTCCAACTCTGGCATGGCAGTCTTTTTTAGATTGCAGCAGAGAGA----------ACCTGA
TCTGATCTTTTTTTTTTCCGAATGGAACCTGATCTGATCTGTACAACTATCT--AACACTCCTAAATTTGGCAGAGCGCA
CAAGGTTCCCTGAAAATCAGGGATCGTAAGGGATGGCAGCATGGTA------TCATCATCGACGGAAACAGAAACTGGAA
GTGCAAGTACTGCCCCATGGTTGGGCGCAGCGGCGGCGTCACCAGCCTCAAGCATCATGTTGCTGGTGGCAGCACCAGGG
TAAGGGCCTGCCCATCTGCTCCTAAACATGTCTCCAAGGAGGTGAAAC----GTTGGTTGGACAGTAGAAGGCGGAAACC
---AAAGTGGACTGCACGAAAAGG--GACTGTTGTGCAGCCGGCAATGGCCACAA--CCACTGACCCCAAGAACCCTGTA
CCCAGCAATTC---------------------------GACACAAGGTTCTGATGAAAACAGTGCATTCCCCTCCCCAGC
ATCATTCATGACACCTCTTGTGGACATGATGCTTGCTGCCGCGGAGGTGCTGAGGGCGGAGG---AGGAGCAGGCCAAGG
ACTCTGAAAAGAAGCCATGAAGAAGCAGGAAGATTGGTGGAGGTGTA-----AAA--AA--AAAATGTTATCTTAACCTC
TGCGAGTTCAAATCTTATTTTAAG-----TACTTGTTAATGTAACTTGAGGATGCTTCATACAGTATTTTCCTCTTGGGA
GAATGCTGTC--AG-------------------------------TCTTAAGAAAAGTTGCA----TTACCATTTAGAAC
GCCTCATGTTTCAACT-------------------------CTATACGATGATATGATGCCGAGACGTTCTCGTTGAATG
CTAAAAGTTGCACGTCTCC----GCGTCATTTCTCTCATGATCTCTCCTCTGCCTGTCTCAATCTACTGGCGCATATCTG
ATAATGTGAATGTACACGCCGCTATAAGAATGGATTATAGATCTGTAAGTGCGTACTTCGGTGACATTGACATTG-----
--------------------------------------ACTTAGCCGATTCATAAGCATGTTATGGGCCATGGACTATAT
ATATGCTACACAAAGTTAATAACTTATCTAGCCCCAAATGTAGAAGACTGCCATGCCATAGTTGGAGGCAGAGTGAGTGG
AAAGTTCAACATAAAGCTTTTGGCTATTTGGTCTGTATGATTTCAGGCAACTAGTATAGTTACCCTGTAACTAGTGAATC
ATGGTAAGACTAATTTTACGATATAGAGTTGGAAGGTAAATTTTAGCATAAATCTCGAAATCTCTATAGTTCTTTCAGAA
AATGAAGGAGGT----------------TTACCCAAAACAATTTAGTCCTACTGGAAGTGTTTTAGCTGTTAAAAGCA--
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-----------------------------------AACAAATTATGGAAACCATCAGCTAGTTATTATTACATATCTAAT
CATACCTATGTTGTCTCTTTATGCTAAACTATTTTCAAATTTTTTGGAAACCTGTAATGTGTTTTTCTAATTGGGTGCAC
AGGTTGCATAGAAACCATGGGTGCACAGGAGGATATGTTCTCAGTTGCCAACTTGTCATGGCCGAGGGAGTATCCTGTGC
ACA-GTAGTTCTTGTGCAACTGGTGCACCCTACAGTATAGATCTATATAATAAAAGTTTCGGAAAATGATCATATAG
>chr3A_159
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GA
TAATTACTTGAGGAAGAACGGTCAGAAGTTCTCAGTACTGTGAATGTATTGGCATCTCCCGCTTGTATCCTTCTTGTAGC
TTGACTTGTAAGCAAGTGGTTTTTTCACATTTCCATAATCATGTAAATCAGGTTGAGTCCAAAAATTGCACACAAGAAAG
TGTGCTGCAACATCTCCATGCTGTTTCCAGTAATCATTTTTGGTTCAGGCCAATCTGTTAACAATCAGTCTGTCACGTCC
AGCCAAGCAAGTTAGCTTCAGTTTTGTCCATATCATTTTTTTTGCGAAAGTTGTCCATATCAATTAACACCCCAACTTTT
TAACCAAAGAGACAGCTTGAGATGGGA-GGCCTCCACCTCTAATTTGTTGGTACGAAACGATGGAAGGAAAAACTTTACT
GCCTTCCTTCCAAAGCCCACCGATTTTTTAT-------------------------------------------------
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------------------------------------------------------------------------ACGAAAAA
TACCACTGTAA-GCACTT-GATACGGAGGGAGAGCGTACAAACACCAAATATTGGATACATTATACATGCACCTTGAAAA
GATAACTTGTCCACGTCACGGATCCGGGTGCTCTGTAG-AAGTAGCCGTTAATAATTCCAGGCAGGAAATTAAAGCTTAC
CACAAGATACAGGACTGCTAATCTGTACGTAGAAAGAAACACAGGCGCGCAAACAGATTTAGAAGAAAACACATCTGGCG
CCCGGTGCTGAATTCATAGTCAGGAATGGAAAGGCAATACTCCTGGGACTTTAAAAGGGGATGCTAGGCGCCAAGTTTGT
CACCAGGCATTGCCGGATCATCTATCGCCAGCCCTCCTCTCCTACACTTTCTGTTCAGGTTGCAAATTCGTCTTCTAATT
ATCTTTCGTTGGGTAGTGGATAGTGATCGTAGTAGTGACAGTTTCGGTTGGATTTGATGCAGGATCCTCGTTTCTTGATC
GAAACTTTTGTAGATGGCTGACAAACAGAACAACAAGGGGAAGGAGAAGATGCGCTGCTCGGAGTCGCTGTCCGACGATT
CAGATTCAGATTCAGTACGGCCCTGCAAGAGGCCCCGGCGGGCGGCTCCAGAGACCACCCCGGAGCAGCAGGTATGATCC
TGTCGAATTCTCGCTTGTAGGACCGATTCTGTTGGTAGAAAAGCTTTATGCGCTTTTTATCTTCTGCGTTGCAATTCTGT
GCTAGTGGATTCTAGGGCTATT-TTTTTCTGTGATGTTTCTTGAGATGATTTCTTGTTCTGGGTAATTTTTGCCTTA---
TTTTTTTTTGTCTCGAAGAACTCCAGATCTTGCAGATTTCTGATAGATTTTGTCATTCAACTCTGTGGACTGAATAAAAA
GGCTTGCCGTGAATTTCCATCCAATCCCTGAACTAGTTAGCATTATGGGGGAAAACAACTCGCAAAACCAATAGACAAAA
ATCTCGTGT---------GCTCCAGCTCTGGCATGGCAGTCTTTTTTAGATTGCAGCAGAGAGA----------A-----
---------------------------CCTGATCTGATCTGTACAACTCTCT--AACACTCCTGAATTTTGCAGAGCGCA
CAGGGTTCGTTGAAAATCAGGGATCGAAAGGGATGGCAGCATGGTA------CCATCATTGACGGAAACAGAAACTGGCA
GTGCAAGTACTGCCCCATGGTTGGGCGCAGCGGCGGCGTCACCAGCCTCAAGCATCATGTTGCTGGTGGCAGCAGCAGGG
TAAGGGCCTGCCCATCTGCTCCTAAACATGTCGCCAACGAGGTGAGAC----GTTGGCTGGACAGGACGAGGCGGAAACC
GCGAAAGTGGACTGCAAGAAAAGG--GACTGCTGTGCAGCCGGCTGTGGCCACGA--CCACTGACCCCAACAACTCTGTA
CCCCGCGGTTC---------------------------GACAGA---TAATGAGGAAGGCAGTGCCTTCCCCTCACCCGC
ATCTTTCATGACACGTCTCGTGGACATGATGCTTGCTGCCGCAGAGGTGCTGAGCA---AGG---AGGAGCAGGCGAAGG
ACTCTGAAAAGAAGCCATGAGGAAGCAGGAAGATTGGTGGAGGTGTA-----AATTTTTT---TTTGTTACCTTAATCTA
TGCGAGTTCAAATTTTATTTTAAGTACTATACTTGTTAATGTAACTTGAGGATGCTTCATACAGTATTTTCCTCTTGGGA
GAATGCTGTC--AG-------------------------------TCTTAAGAAAACGTTGCATTGTTACCATTTAGAAC
GCCTCATGTTTCAACTG-TCGCCGTTTGATGTGCTATTTTGCTATACGATGATATGATGCCGATACGTCGTCGTTGAATG
CTAAAAGTTGCACGTCTCC----GCATCATTTCTCTCATGATCTCTCCTCTGCCCGACTCAATCTACTGGTGCTTATCTG
ATAATGTGAATGTACACGCCACTATAAGAATAGATTATAGATCTGTAAGTGCGTACTTCAGTGACATTGACTTGTAAACA
GTACAAGCGTTTTTCATATCGT--TTTTGTACTTATTTACTTAGCCGATTCATAAGCATGTTATGGACCATGGACT----
--------------------------------------------------------------------------------
----------------------GCTATTTGATCTGTATGATTTCAGGCAACTAGTATAGCTACCCTGTAACTAGTGAATC
ATGGTAAGACTAATTTTATGATATAGAGTTGGAAGGTAAATTATAGCATAAATCTCGAAATCTATATAGTTCTTTCAGAA
AATGAAGGAGGT----------------TTACCCAGAACAATTTAGTCCTACTGGAAGTGTTTTAGCTGTTAAAAGCAAG
CAATCAT-------------------------------------------------------------------------
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-----------------CAGAAGATTGTTTCGTTTAACAAATTACGGAAACCATCAGCTAGTTATTATTACCTATCTAAG
CATACCTATGTTGTCTCTTTATGCTAAACTATTTTCATTTTTTTTGGAAACCTGTAATGTGTTTTTCTAATTGGGTGCAC
AGGTTGCATAGAAACCATGGGTGCACAGGAGGATACGTTCTGAGTTGCCAACTTGCCATGACCGAGGGAGTATCCTGTGC
ACA-TTAGTTCTTGTGCAACTGGTGCACCCTACATTATAGATCTATATAATAAAACTTTCAGAAAATG---------
>chr3B_247
--------------------------------------------------------------------------------
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-----------------------------------------TGTAAATCAGGTTGACTCCAAAAATTGCATACAAGAAAG
TGTGCTGCAACATCTCCATGCTGTTTCCAGTAATTTTG-TTGGTTCAGGCCAATCTGTTAACAGTCAGTCTGTCACGTCC
AACCAAGCA----------------------------------------------------AATTAACACCCGAACTTTT
TAACCAAAGAGACAGCTTGAGACGAGAGGGCCTCCAGCTCTAATTTGTTGATACGAAACGATGGAAGGAAAAACTTTACT
GCTTTCCTTCTAAAGCCCCCCAATTTATTTTTAGAAAAACTAACGCTCACACGTGTGGGCGTTTGCAGATCGCCCACACG
CCTCCATCACCACTCGTTTTGCCACGTATGAATAGATGACATCAGCAGAAATCTTTTTGGTTTTCGGCTTAAAAATGTTT
TATCTCCTAAATAAAAAAGCAAACTAAAAATCCGTTTTCACCATTAAATCCGTCTCGACGAGATCTTCAAAACTAGACCC
CATGTTGATATATTTTGAAGAATTTTTTTTTGCCCAGAAGTTGCCATGGTGTTTACACTATAGTTGCCATAGTGCTTAAA
CTAAAGTTGCCATGTGGCAATTTTAGTTTGTAGATCATGGCAAATTTAGTTTTTTGATGATGGCAATTCTAGTACTTTGA
CCATAAAAATATTTTTTTATTGAACCATGGCAATTTTAAGTGCATGTATCATGACATTTTAGTTTATGGTGCATGGCAAA
TCTAGTTTCTTAATTCTTTGTTTTATAATATGTTAAATTCTACTTTTAAATGTAAAATAAAATAGTTGAAACATATCATG
GCAACTTCAGTGTAAATACCATGGCAATTCATGTGCAATAGACATGGCAACTTTTAACAAAAAAAAAATTTCGCCAAAAT
ATATCGATATGAGATCTAGTTTTGAAGATCTCGTCGCGAGGGATTTAATGGTGAAAACAGATCTTCAATCAGATTTTTCA
TTTAAGAGATAAAACATTTTAAAAACTAAAAATCCGAAAAGATTCTCGCATACATGCATGCGATGACGTGACAATCTATT
TGCATTAGAGACATGTGGTGCGTATCCTTTCCTGTCACACGTGTGACAGTTATTGACGTTCTTTATTTTTTAACGAAAAA
TACCACTGTAA-GCACTTAGATACGGAGGGAGAGCGTAGAAACACCAACGAATGGATACAT--TACATGCACCATGAAAA
GATAACTTGTCCACGTCACGGATCCGGGTGCTCTGTAG-AAGTAGCCGTTGATAATCCCAGGCAGGAAATAAAAGCTTAC
CACAAGTTAGAGGACTGCTAATCTGTACGTAGAAAGAAACACAGACGCGCGAACAAATTTAGAAGAAAACACGTCTGGCG
CCCGGTGATGAATTCATAGTCAAGAATAGAAAGACAATACTCCTGGGACTTTAAAAGGAGATGCTGGGCGCCAAGTTTGT
CACCAGGCATTGCCGGATCATCTATCGTCAGCCCTCCTCTCCGACGCTTTCTGTTCAGGTTGCAAATCTGTCTCCTCTGT
ATCTTTCGTTGGGTAGTGGTTAGTGGTGGTAGTAGTAACAAGTTCTGTTGGATTTGATGCAGGATCCTTGTTTCTTGGTC
GAAACTTTTGTAGATGGCTGACAAACAGAACAACAAGGGGAAGGAGAAAATGCGCTGCTCGGAGTCGCTGTCCGACGA--
----TTCAGATTCAGTACGTCCCTGCAAGAGGCCCCGGCGGCCGGCTCCAGAGACCACCCCGGAGCAGCAGGTACGATTC
TGTTGAATTCTCGCTTGCAGGATCGATTCTGTTGGTAG----------TGCGC--TTTATCTTCTGCGTTGCAATTCTGT
GCTAATAGATTCTAGGGCTA-TATTTTTGTGTGATGTTTCTTGAGATGATCTGTTGTTCTGGACAAATCTGGCATAA---
-TTTTTTTTGTCTCGAAGAACTCCAGATCTTATGGATTTCTGATAGATTTTATCAGTCAACTCCGTGGACTGAA-AAAAG
GGCTTGCCGTGAA-TTTCATCCAATCCCTGAATTAGTTAACATTATGAGGGAAAACAACTCACAAAACCAACAGACAAAA
ATCGCGTGTTAGTCTTTGGCTCCAACTTTTGCATGGTAGTCTTTTTAAGGTTGCAACAAAGAGA----------A-----
---------------------------TCTGATCCGATCTGTAAAACCATCTATAACACTCGTGAATCTTGCAGAGCGCA
CAAGGTCCGCTGAAGATCAGGGATCGAAAGGGATGGCAGCATGGTA------CCATCATTGACGGAAGCAGAAACTGGCA
GTGCAAGTACTGCCCCATGGTCGGGCGCAGCGGCGGGGTCACCAGCCTCAAGCATCATGTTGCTGGTGGCAGCACCAGGG
TAAGGGGCTGCCCATCTGCCCCCAAAGAAGTCTCCCGTGAGATGAGAC----GTTTGTTGAACAGCAGGAGGCGGAAACC
---AAAGTGGACTGCACGGAAAGG--GACTGTTGTGCGGCCGGCTATGGCCACAA--CCACTGAGCCCAAGAACTCTGTA
CCCAGCGATTC---------------------------GACAGAAGGTTCTGATGAAAACCGTGCATTCCCCTCCCCGGC
ATCATTCATGACACGTCTTGTGGACATGATGCTTGCTGCCGCAGAGGTGCTGAGCA---AGGAGGAGGAGCAGGCCAAGG
ACTCTGAAAAGAAGCCATGACGAAGCAGGAAGATTGGTGGAGGTGTA-----AAAGTAA-TAATTTGTCACCTTAACCTC
TGCGAGTTCAAATCTTATTTTAAG-----TACTTGTTAATGTAACTTTAGGATGCCTCATACAGTATTTTCCTCTTGGGA
GAATGCTGTC--AGCTTAAGTAAAGTTTGTTTTTTTGCAAATTAGTCTCAAGAAAAGTTGCA----TTACCATTTAGAAC
GCCTCATGTTTCAACT-------------------------CTATACGATGATATGATGCCGAGACGTCCTCGCTGAATG
CTAAAAGTTGCACGTCTCC----GCATCATTTCTCTCATGATCTCTCCTCTGCCTGCCTCAATCTACTGGCGCATATCTG
ATAATGTGAATGTACACGCCACTAGAAGAATAGATTATAGATCTGTAAGTGCGTACTTCGGTGACATTGACTTGTAAACA
GTACAAGCGTTTTTACATATGT--TTTTGTGGTTATTTACTTAGCCGATTCATAAGCGTGTTATGGGCCATGGACTATAT
ATATGCTACAGAAAGTTAATTACTTATCTAGCCCCAAATCTAGAAGACTGCCATGCCATAGTTGGAGGCAGAGTGAGTGG
AAAGTTCAACATGAAGCTTTTGGCTATTTGATCTGTATGATTTCAGGCAACTAGTATAGTTACCCTGTAACTAGTGAATC
ATGGTAAGACTAATTTTACGATATAGAGTTGGAACGTAAATTTTAGCATAAATCTCGAAATCTCTATAGTTCTTTCAGAA
AATGAAGGAGGT----------------TTACCCGAAACAATTTAGTCCTACTGAAAGTGTTTTAGCTGTTAAAAGCAAG
CAATCAT-------------------------------------------------------------------------
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-----------------CAGAAGATTGCTTTGTTTAACAAATTATGGAAACCATCAGCTAGTTATTATTACATATCTAAT
CATACCTATGTTATCTCTTTATGCTAAACTATTTTCAATTTTTTTGG-AACCTGTAATGTGTTTTTCTAATTGGGTGCAC
ATGTTGCATAGAAACCATGGGTGCACAGGAGGATAT-TTCTCAGTTGCCAACTTGTCATGACCGAGGGAGTATCCTGTGC
ACAGTTAGTTCTTGTGCAACTGGTGCACCCTACAGTATAGATCTATATAATAAAAGTTTCGGAAAATGATCATATAG
>chr3B_1302
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----TTTCTGTCTCGAAGAACAACAAATCTTACAGATTTCTGCTAGATTTTATCATTCAAATCTGTGGACTGAA-AAGAA
GGCTTACCATGAATTTTCATCCAATCCCTGAACTAGTTAACATTACTAGGGAAAACAATTCACAAATCTAATAAACAAAA
ATCGCACGT---------GCTCCAACTCTGGCATGGTAGTCTTTTTTAGGTTGCAGCAGAGAGAACCTGATCTGA-----
---------------------------TCTGATCTGATCTGTATGACTATCT--GACACTCCTAAGTTTTACAGAGTGCA
CATGGTTTCTTCAAAATTAGGGATCGCAAAGGATGGGAGCATGGTA------CCGTGATTTATGAAAACAGACATTGGAA
GTGGAAGTACTGCCCCACGGTTGGGCGTAGCGGTGGTGTCACCAGCCTCAAGCATCATATTGCCGGTGGCAGTAGCAGGG
TAAGGCCGTGCCTATCTGCTCCCAAAGATGTCTCCAATGAGATGAAACGCTTGTTTGTTGGGCAGTAGGAGGCGGAAACC
GCAAAAATGGACGACACAAAAAGCTATACTGTTGTGCAGCCGGCTATGGCAACAGAGCCTCTGAGCCCAAGAACTCTATA
CCCTTGACCACGCATTCGACAGAAGGTTCCATGACGGAGACAGA---TTCTGAGGAAAACAGTGCATTCCCCTCGTCAGC
ATCATTCATGACACGCCTTGTGGACATGATGCTTTCTGCTGCAGAGGTGCTGAGGG---CGGAGGAGGC---GGCGATGA
CCTCTGCAAACAAGCCATGACGAAGCAGGAAGATTGGTGGAGGTCTAGTAGTAAA--AAGAAAATTGTTACCTTAACCTC
TGGGAGGTCAAATTTTATTTAAAG-----TACTTGTCGATGTAACTTGAGGATGCTTCATACAGTATTTTCATCTTGGGA
GGATGCTGTC--AG-------------------------------TCTTAAGAAAAGTTGCA--TGTTACCATTTAGAAC
GCCTCATGTTTCTAATTATCGCCCTTGGATGTGCTATTTTGCTACACTAC--------------ACGTCGCTGTTGAATG
CTAAAAGTTGTTCCACGTCGCAGGCATCATTTCTCTCATAGTCACTCCTCTCCCTGTCTCAATCTACTGGTGCATATCTG
TTAATGTGAATGTACACAGCACTACAAGAATAGATCTGT------TAAGTGCATACCTCGGTGACATTGATATGTAAACA
GTATATGCATTTTTATGTATCGCCTTTTGTGGTCATTTACTTAAACGAAAACA---------------------------
-----------AAAGCTAATAACCTATCTAGCCTCGAATCTAGAAGACTGACAAGCCATAGTTGAAGGCAGAGCGAGTGA
AAATTTCAAGATGAAACTTTTGGCT-------------------------------------------------------
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>chr3A_1332
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----------------------------------GATTTTTGCTAGATTTTATCATTCAAATCTGTGGACTGAA-AAGAA
GGTTTACCGCGAATTTTCATCCAATCCCTGAACTAGTTAACATTATGAGTGAAAACAATTCACAAAGCCAATAAACAAAA
ATCTCACGT---------GCTCCAACTCTGGCATGGTAGTCTTTATTAGGTTGCAACAGAGTGAACCTG-----A-----
---------------------------GCTGATATGATCTGTACAACTATCT--AACACTCCTAAATTTTACAGAGTGCA
CATGGTTTCTTCAAAATTAGGGATCGAAAAGGATGGGAGCATGGTAGTGGTACCATGATTGACGGAAACAGACATTGGAA
GTGTAAGTACTGTCCCATGGTTGGGCGCAGCGGTGGTGTCACCAGCCTCAAGCATCATGTTGCTGGTGGCAGTAGCAGGG
TAAGGGCCCGCCCATCTGCTCCTAAACATGTCTCCAACGAGATGAAAC----ATTGGTTGGACAGGACGAGGCGGAAACC
ACGAAAGTGG-----------------ACTGTTGTGCAGCCGGCTACGGCCACGA--CCATTGACCCCAACAACTCTGTA
CCCAGCGATTC---------------------------GACAGA---TAATGAGGAAGGCAGTGCATTCCCCTCACCAGC
ATCATTCATGACACGCCTTGTGGATATGATGCTTTCTGCTGGAGAGGTGTTGATGG---CGGAGGAGGTGGT---GATGA
CCTCTGCAAACAAGCCATGACGAAGCAGGAAGATTGGTGGAGGTCTAGTAGTAAA--AA-AAAATTGTTACCTTAACCTC
TGGGAGGTCAAATTTTATTTAAAG-----TACTTATCAATGTAACTTGAGGATGCTTCATACAGTATTTTCCTCTTGGGA
GGATGCTTTC--AG-------------------------------TCTTAAGAAAAGTTGCA--TGTTACCATTTAGAAC
GCCTCGTGTTTCTACTTATCGCCATTGGATGTGCTATTTTGCTACACTAC--------------ATGTCGTCGGTGAATG
CTAAAAGTTGTTCCACGTCGCAGGCATCATTTCTCTCATAGTCACTCCTCTCCCTGTCTCAATCTACTGGTGCATATCTC
ATAATGTGAATGTACACAACACTATAAGAATAGATCTGT------TAAGTGCATACCTCGGTGACATTGATATGTAAATA
GTATATGCATTTTTACATATCACCTTTTGTGGTTATTTACTTAAACGAAAACA---------------------------
-----------GAAGCTAATAACCTATCTAGCCTCCAATCTAGAAGACTGACAAGCCATAGTTGGAGGCAGAGCGAGTGA
AAATTTCAAGTTGAAACTTTTGGTTGTTTGCTGTTCATGGCATGATTTGTTTTACTC-----------------------
--------------------------------AAGGTAAATTTTAGCAAAAGTATTGGAATGTCTATAGTTCTTTCAGAA
AGTAAGAAGATTTACCCAAAACAATTAGTTACATGAAACAACTTAGTCCTACTGGAAGTGTTTTGGCTTCTTAAAGTGGT
GTGTACATTCACATTATCAGATATGCACCAGTAGATTGAGACAGGGTGAGGAGAGATTATGAGAGAAATGGCGCCTGACA
CGTGCAACTTTTAGCATTCAATGGTGACGTCTCCGCATCGTAGTAGTATAGCAAAATAGCACATACAAGGGCGATAATTA
GAAAAATGAGGCGTTCTAAATGGTAACATGCAACTTTTCTCAAGACTATGACAACATCCTCCCAAGAGGACAATACTGTA
TGAAGCATCCTCAAGTTACATTGACAAGTACTTCAAATAAATTTGACCTCGCAGAGGTTAAGGTAACAATATTATTATTA
TTACTAAACCTCCCCCAGTTTTCCTACTTCGTCACAATTTGTTTGCAGAGGTCATCGCCAGCTCTTCCGCGCTCAGCACC
TCTGCAGCAGAAAGCATCATGTCCACAAGAGGTGTCATGAATGATGCTGAGGAGGGGAATGCACTGTTTTCCTCATAATC
TATCTCCATATTGTGACCAGAAGATTGTTTTGTTTAACAAACTATGAAAAACATCATCTAGTTATTATTACCTATTCTAA
TCCTTTGCAAGCTGGATGTTTCGTTGTAACCTGGGAGTATATTGCTTTCCGGTTAACTCATGTTCTTCCATGACCTGCTC
GATACTATGCTATTCTGCAGCCAAAA------------------------------------------------------
-----TAGTTCTTGTGCAACTGGTGCACCCTACA-------------------------------------------
>chr3D_1546
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----------------------------CTGATCCGATCTGTACAACTATCT--AACACTCCTAAAATTTACAGAGTGCA
CATGGTTTCTTCAAAATTAGGGATCGAAAAGGATGGGAGCATGGTA------CCATGATTGACGGAAACAGACATTGGAA
GTGTAAGTACTGCCCCATGGTTGGGCGCAGCGGTGGTGTCACCAGCCTCAAGCATCATGTTGCTGGTGGCAGTAGCAGGG
TAAGGGCCTGCCCATCTGCTCCCAAACATGTCTCCAATGAGATGAAACGTTTGTTTGTTGGGCAGTAGGAGGCAGAAACC
GCGAAAGTGGACTGCACAAAAAGC--TACTGTTGTGCAGCCGGCTATGGCAACAG--CCTCTGAGCCCAGGAACTCTATA
CCCTTGACCACACATTCGATAGAAGTTTCCATGACGGAGACAGA---TTCTGAGGAAAACAGTGCATTCCCCTCCTCAGC
ATCATTCATGACATGCCTTGTGGACATGATGCTTTCTGCTGCAGAGGTGCTGATGG---CGGAGAAGGC---GACAATGA
CCTCTGCAATCAAGCCATGACGAAACAGGAAGATTGGTGGAAGTCTAGTAGTAAA--AA--AAATTGTTACCTTAACCTC
TGGGAGGTCAAATTTTATTTAAAT-----TACTTGTCAATGTAACTTGAGGATGCTTCATACAGTATTTTCCTGTTGGGA
GGATGCTGTCACAG-------------------------------TCTTAAGAAAAGTTGCA--TGTTACCATTTAGAAC
GCCTCATGTTTCTAATTATCGCCCTTGGATGTGCTATTTTGCTACACTAC--------------ACGTCGCCGTTGAATG
CTAAAAGTTGTTCGACGTTGCAGGCATCATTTCTCTCATAGTCACTCCTCTCCCTGTCTCAATCTACTGGTGCATATTTG
ATAATGTGAATGTACACAACACTATAAGAATAGATCTGT------TAAGTGCATACCTCGGTGACATTGATATGTAAACA
GTATATGCATTTTTACATATCGCCTTTTGTGGTTATTTACTTAAATGAAAACA---------------------------
-----------GAAGCTAATAACCTATCTGGCATCGAATCTAGAAGACTCACAAGCCATAGTTGGAGGCAGAGCGAGTGA
AAATTTCAAGATGAAACTTTTGGCTGTTTG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-----------------------------S-S------------------S-S-S---S----------S----------
--S--------------------------------------------------------S----------S-------S-
----------------------S--------------------------------------------S------------
----------S--S------------------------------------------------------------------
----------------------------S-------S-------------------------------------------
-------SSSSSSS-SSS--S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-----------------------------S--------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
---------------------------------------------------------------------------S----
---------------------------------------------------------------S----------------
---------------------------------------------------------------------S----------
-----------------------------------------S--SS------S---------------------------
-----S------------------------------------------S--------------------S-------SSS
--------------------------------------------------------------------------------
--------S-----------------------------S-----------S-----------------------------
---------------------------------------------------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------S----------
--------------------------S-------------------------S------S--------------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------S-----------
--------------------------------------------S-----------------------------S-----
------------------------------------------S-------------------------------------
--------------S---------------------------S-------------SSS---------------------
--------------------S-------------------------------------------S-----S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
-------------------------S------------------------------------------------------
--------------------S----------S-----------------------------------------SS-----
--------------------------------------------------------------------------------
----------S----------------------------S----------------------------------------
------------S-----------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
----S------------------------------------------------------------------------
>forward_78
----------------------------------------------------------AAACTTTCTCGGACGGAGGG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>reverse_2789
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AAGGCGGAAACC
AAAGTGGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>forward_2133
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------GGTAGAAAGGCCGTATGCGA---------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>reverse_3061
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------AGAAGCAGGAAGATTGGTGGA---------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
