>input_sequence_62220
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----------------------------------------------------ATGGAATATTGTGAAACAAAAATTGAAA
TGGAAGAACATTTTCCTGTGGAATATCCATGGAAATTGATCCGTGGATATAAAATCTTTTGTATTTACCATGGCGACGCG
GGGCAGGGTGAAGTTGGCGTTGGTGTCCCTGAGCGAGCAGCCGCGATAATGGGTGT-GTGGGGCGCTCATGGCGGAAGGT
GAGAAGAATTTGAACTAGGATGAAAATGGAGTGGAAACTTCCGGATT---------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTCCAAG-AAAAAACGGAAACAAAGTG
AAAATACGGAAACAAAAACAGAATGTTGCGAAACGAAAACGGAAGTGGAACAACGTTTTCCGGTGGAACACCCATGGAAA
CGGATCCGTGAATGTGAAACTTCCTATTTTCACCATGGCGACACGGGGCGGGGTGAAGATGGTGTTGCCGTCCCTGAGTG
AGCGGCTGCCACAATGGGTGCTTGGGGCACTCATTGCGGAAGGTGAGAAGGATTTGAACTAGGATGAAAATGGAGTGGAA
ACTTACCGGATTTTCCACGGGAAAAAGGAAACAAAGTGAAAA-TATGGAAACCAAAACAGAATTTGTGAAAGGGAAATTG
AAATGGAATAGCGTTTTCTGGTGGAACATCGACGAAAACGGATCCTTGAATATGAAATTTTCTGTTTTTACCATGGTGAC
GCGGGGCATGGTGAAAAGACGACGTTGGCGTCCCCTAGTTAGCGGCTGCGGCAATGGGTGCGTGGGGGCGCTCATGACGG
AAGGCGAAAAGGATTTGGACTAGGATTAAAATGGGGTGGAAATTGTCCGGA-TTTTCCAGAAAGAACGGAAACGGAGTGA
AAATACGAAAACAAAAACGAATATTGCGAGATGGAAACGG----AAACGGAAATGGAACAGCATTTTCCGGTGGAACAGC
CATGGAAACGGATCCGTGAATATGAATCTTTCTGTTTTTGCCATGGTGACGCGGGTTGGGGTGAAGGTGGCATTGGCATC
CCCGAGCGAGCGGCTGCGAGAAAGGGTGCGTGGGGCGCTCATGGCGGACAGTGGGAAGGATTTGAACTAGGATGA-----
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>chr3A_1_TraesCS3A01G363200
GAACATCTGGCGCCACTTCCAGTAGTTGTTGGTTTCGAGACTGAGCTTGAATGGGATGTAAGAAGTATTGCTGATATGAT
GCATGGAAGGAGCAGGGACAAGGGGACCTGGGTGAGGAAGCAGCGCCGGCGGGGGGTGAGGGCATTGGAAGTAAGGTGCA
ACTCACGAATGATGCTAGCTTGGGTAAGTGGTCAGCTGTCGCCAGCAGGACCAGCGATGCCGGT----------GGCTGG
AGTAGGCTGCATTGCCTAGGGGACAGGCGCAGGGGCGACGCGGGGCGGGGTGAAAATGGCGTTGGCGTCCCTGAGCAAGT
TGCTGCAACAATGGGTGCGTGGGGCGCTCATGGCGGAAGGTGAGAATGATTTGAACTAGGATGAAAACGGAGTGGTAAAT
TTCTGGATATTCCACAGAAAAACGGAAACAAAGTGAAAATACGGAAACCAAAACGGAATATTGTGAAATGGAAATTGAAA
TGGGAAAACGTTTTCCGGTGGAGCATCCATGGAAACGGATCTGTGAGTATGAAACTTTCTGTTTTTACCATGGCGGCCTG
GGGCGGGGTGAAGACAACTGTGGCATCCCCAAGCGAGCAGCTGCGACAATGGGTGCGTGGGGCGCTCATG-CGGAACGTG
AGAAGGATTTGAACTATGACAAAATGAAATGGACACTATCTGGATTTTCCACGAAAAACAGAAACGGAGTGAAATACGGC
AACAAAAACGGAATATTGCGAAACAGAAACAAAAATGGAAATGGAAAAGTGTTCTCCGGTGGAATAGCCACGGAAATGGA
TTCGTGAATATAAAGCTTTCTGTTTTTACCATGGCGACGCGGGGTGGGGTGAAGACGACATTGGCGTCCCCGAACGAGCG
GATGCGACAATGGGTGCATGGGGCGCTCATGGCGGAAGGTGGGAAGGATTTGAACTAGGATGAAAACGGAGTGGTAACTT
TTCGGATTTTCCATGGAAAA-ATGGAAACATAGTGAAAATACATAAACCAAAATGGAATATTGTGAAACAAAAATTGAAA
TGGAAGAACATTTTCCTGTGGAATATCCATGGAAATTGATCCGTGGATATAAAATCTTTTGTATTTACCATGGCGACGCG
GGGCAGGGTGAAGTTGGCGTTGGTGTCCCTGAGCGAGCAGCCGCGATAATGGGTGT-GTGGGGCGCTCATGGCGGAAGGT
GAGAAGAATTTGAACTAGGATGAAAATGGAGTGGAAACTTCCGGATT---------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTCCAAG-AAAAAACGGAAACAAAGTG
AAAATACGGAAACAAAAACAGAATGTTGCGAAACGAAAACGGAAGTGGAACAACGTTTTCCGGTGGAACACCCATGGAAA
CGGATCCGTGAATGTGAAACTTCCTATTTTCACCATGGCGACACGGGGCGGGGTGAAGATGGTGTTGCCGTCCCTGAGTG
AGCGGCTGCCACAATGGGTGCTTGGGGCACTCATTGCGGAAGGTGAGAAGGATTTGAACTAGGATGAAAATGGAGTGGAA
ACTTACCGGATTTTCCACGGGAAAAAGGAAACAAAGTGAAAA-TATGGAAACCAAAACAGAATTTGTGAAAGGGAAATTG
AAATGGAATAGCGTTTTCTGGTGGAACATCGACGAAAACGGATCCTTGAATATGAAATTTTCTGTTTTTACCATGGTGAC
GCGGGGCATGGTGAAAAGACGACGTTGGCGTCCCCTAGTTAGCGGCTGCGGCAATGGGTGCGTGGGGGCGCTCATGACGG
AAGGCGAAAAGGATTTGGACTAGGATTAAAATGGGGTGGAAATTGTCCGGA-TTTTCCAGAAAGAACGGAAACGGAGTGA
AAATACGAAAACAAAAACGAATATTGCGAGATGGAAACGG----AAACGGAAATGGAACAGCATTTTCCGGTGGAACAGC
CATGGAAACGGATCCGTGAATATGAATCTTTCTGTTTTTGCCATGGTGACGCGGGTTGGGGTGAAGGTGGCATTGGCATC
CCCGAGCGAGCGGCTGCGAGAAAGGGTGCGTGGGGCGCTCATGGCGGACAGTGGGAAGGATTTGAACTAGGATGAAAATG
GAGTGGGAACTTCCCGGATTTTCCGTGGTAAAACGGAA--AGAGTGAAAATACTGAAACGAAAACAGAATATTGCAAAA-
GGAAATTGAAATGGAACAGCGTTTTCCGGTGGAACAGCCACGGAAGCAGATTCGTGAATACGAAACTTTCTGTTTTTACC
ATGTCTACTATGTGGCTCAGTCCAGCACTCAATAAAACTCACGTTGTGGCCAATAATGGCAACACTAATATCTAATAGAA
TCCTCACCCATCCTCAC--TATTGTCCAGGAGCCTCTGTTTGGCGCGGCTGGTTTATGAGTTATACCACCGGCTTAGGAG
TCACCAAAAGTTGTTGTGGTCATATCAATTGAAATAGTTTGCTTGTGATTTTCTCAATTGTTAAAGGGGTCTTTTGGTTC
CGGCGAACATCTGGTTTTGTATCTGCTGTACACCGTATTTGATTTGTATCTGTTTCCAGTAGTATTTATCTCCCTATTCA
TTTCCTAGGTTTTTGCATTCGTTATGAAAATAAATGTGGCAGCACTCAGTTCCTTCTGTTTCCGCTCCGTTTCCATCCAT
ATTTGAACATGCGACTGATACCAAGTTAGATGGGGGGAATTCTCTATTTATTGCATTGACCAACACGGGTGTGCTTATGT
ACACTTGAGAGGTACATGAGGATTACACGTTACAACGGAAACACAGATGAGTGCCGATCATGGCACGCGTGGGAGCGTGG
GCGAGTGTGTGCACCTGTACGCCGTGGGAACCGGTCCTGGAGGTTGGCCTCCCAAGAGTGAGTCTGTAACGGGTTTCTAA
CATTTAATCACTTGACCCTTCTTGTGCCACTCTTTTAACCCAAAAAATCTAAACTTGCCAGTCTGTTAAGTAAAATTGTA
TGACAAGCCACACGGGTAGTATATCAGAACTATTATCTTGTTCTGTGTGTGATAGCTAACAGCCTTTTAATGACGAGCAT
TCATCTGTACTAAGGTTGAATATTGGTGTAGATGCATACA
>chr3D_1
GAACATCTGGCGCCACTTCCAGTAGTTGTTGGTTTCGAGACTGAGCTTGAATGGAATGTAAGAAGTATTGCTGATATGAT
GCATGGAAGGAGCAGGGACCTGGGGACCTGGGTGAGGAAGCAACGCCGGCGGGGGGTGAGGGCATTCGAAGTAAGGTGCA
ATTCACGAATGATGGTAGCTTGGGTAAGTGGTCTGCTGTCGCCAGCAGGACCAGCGATCCCGGT----------GGCTGC
AC----------TGCCGAGGGGACAGGCGTAGGGGCGGCGCGGGGCGGGGTGAAAATGGCGTTGACGTCCCTGAGCGAGC
TGCTGCAACAATCGGTGCGTGGGGTGCTCATGGCGGAAGGTGAGAATGATTTGAACTAGGATGAAAACGGAGTGGTAAAT
TTCTGGATATTCCATAGAAAAACGGAAACAAAGTGAAAATACGAAAACCAAA-CGGAATATTGTGAAACGGAAATTGAAA
TGGAAAAACGTTTTCCGGTGGAACATCCATGGAAACGGATCCGTGAATACGAAACTTTCTGTTTTTACCATGGCGGCTTG
GGGCGGGGTGAAGACAACGTTGGCATCCCCAAGTGATCGGCTGCGACAATGGGTGCGTGGGGCGCTCATGGCGGAACGTG
AGAAGGATTTGAACTATGACAAAATGAAATGGACACTGTCTGGATTTTCCACGAAAAACAGAAACTGAGTGACATACGGA
AACAAAAAGGGAATATTGCGAAACAGAAACAAAAATGGAAACGGAACAGTGTTTTCCGGTGGAATAGCCACGGAAATGGA
TCTGTGAATATAAAGCTTTCTGTTTTTACCATGGCGACGCGGGGTGGGGTGAAGACAACATTGGCGTCCCCGAACGAGCG
GATGCGACAATGGGTGCATAGGGCGCTCATGGCGGAAGGTGGGAAGGATTTGAACTAGGATGAAAACGGAGTGGTAACTT
TCCGGATTTTCCATGGAAAAAATGGGAACATAGTGAAAATACGTAAACCAAAATGGAATATTGTGAAACAAAAATTGAAA
TGGAAGAGCATTTTCCCGTGGAATATCCATGGAAATTGATCGTGA-ATATAAAATCTTTTGTATTTACCATGGCGACGCG
GGGCAGGGTGAAGTTGGCGTTGGTGTCCCTGAGCGAGCGGCCGCGACAATGGGTGGCGTGGGGCGCTCATGGCGGAAGGT
GAGAAGAATTTGAACTAGGATGAAAATGGAGTGGAAACCTCCGGATT---------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTCCGCGAAAAAAACGGAAACAGAGTG
AAAATACGGAAACAAAAACAGAATGTTGCGAAACGAAAACGGAAATGTAACAACGTTTTCCGGTGGAACACCCACGGAAA
CGGATCCATGAATGTGAAACTTCCTATTTTTACCATGGCGACACGGGGTGGGGTGAAGATGGCGTTGCCGTCCCTGAGTG
AGCGGCTGCCACAATGGGTGCTTGGGGTGCTCATTGCGGAAGGTGAGAAGGATTTAAACTAGGATGAAAATGGAGTGGAA
ACTTGCCGGATTTTCCACGGAAAAAAGGAAACAAAGTGAAAAATATGGAAACCAAAACAGAATTTGTGAAAGGGAAATTG
AAATGGAACACCGTTTTCTGGTGGAACATCGACGAAAACGGATCCTTGAATATGAAACTTTCTGTTTTAATCATGGTGAC
ACGGGGCATGGTGAAGACGACA--TTGGCGTCCCCTAGTTAGCGGCTGCGACAATGGGTGCGTGGGGGCGCTCATGACGG
AAGGCGAAAAGGATTTGGACTAGGATTAAAATGGGGTGGAAATTGTCCGGA-TTTTCCAGAAAAAACGGAAACAGAGTGA
AAATACGAAAACAAAAAGGAATATTGT------GAAACGG----AAACGGAAATGGAACAGCGTTTTCTGGTGGAACAGC
CATGGAAACGGATCCGTGAATATGAAACTTTCTGTTTTTGCCATAGTGACGCGGGTTGGGGTGAAGATGGCATTGGCATC
CCCGAGCGAGCGGCTCCGAGAAAGGGTGCGTGGGGTGCTCATGGCGGACAGTGGGAAGGATTTGAACTAGGATGAAAATG
GAGTGGGAACTTCCTGGATTTTCCGTGGTAAAACGGAAACAGAGTGAAAATACTGAAACGAAAACGGAATATTGCAAAAC
GGAAATGGAAATGGAACAGCGTTTTCCGGTGGAACAGCCGTGGAAACAGATCCGTGAATACGAAACTTTCTGTTTTTACC
ATGTCTACTATGTGGCTCAGTCCAGCACTCAATAAAACTCACGCTGTGGTCAATAATGACAACACTAATACCTAACAGAA
TCCTCACCCATCCTCAC--TATTGTCCAGGAGCCTCTGTTTGGCGCTGCTGGTTTATGAGTTATACCACCGGCTTAGGAG
TCATCAAAAGTTGTTGTGGTCATATCAATTGAAATAGTTTGCTTGTGATTTTCTCAATTGTTAAAGGGGTCTTTTGGTTC
CGGCGAACATCTGGTTTTGTATCTGCTGCGCATCGTATTTGCTTCGTATCTGTTTCCAGTAGTATTTATTTCCCTATTCA
TTTCCCAGGTTTTTGCATTCGTTATGAAAACAAATGTGGCAGCACTCAGTTCCTTCTGTTTCCGCTCCGTTTCCATCCAT
ATTTGAACATGCGACTGATACCAAGTTAGATGGGGGGAATTCTCTATTTATTGCATTGACGAACACGGGTGTGCTTATAT
ACACTTGAGAGGTACATGAGGATTACACGTTAAAACGGAAACACAGATGAGTGCTGATCATGGCACGCGTGGGAGCGTA-
-----------CACCTGTACGCCGTGGGAACCGGTCCTGGAGGTTGGCCTCCCAAGAGTGAGTCTGTAACGAGTTTCTAA
CATTCAATCACTTGACCCTTCTTGTGCCGCTCTTTTAACCCAAAAAATCCAAACTTGCCAGTCTGTTAAGTAAAATTGTA
TGACAAGCCACACGGGTAGTACATCAGAACTATTATCTTGTTCTGTGTGTCATAGCTAACAGCCTTTTAATGACGAGCGT
TCATCTGTACTAAGGTTGAATATTGGTGTAGATGCATACA
>chr3B_140
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-----------------------------------------------------------GGGCATTGGAAGTAAGGTGCA
ATTCACGAATGATGCTAGTTTGGGTAAGTGGTCAGCTGTCGCCAGCAGGATCAGGGATGCCGGTGGCTGGAGTGGGCTGC
AC----------TGCCGAGGGGACAGGCGCAGGGGCTACACAGGGCGGGGTGAAAATGGTGTTGGCGTCCCTGAACGAGC
GGCTGCAACAATGGGTGTGTGGGGCGCTCATGGTGGAAGGTGAGAAGGATTTGAACGAGGATGAAAACGGAGTGGCAACT
TTCTGGATTTTCCACAGAAAAACGGAAACAAAGTGAAAATACGGAAACCAAAACGGA---------------AATTGAAA
TGGAAAAACGTTTTCCGGCGGAACATCCATGGAAACGGATCTGTGAATATGAAACTTAATGTTTTGACCATGGCGACGTG
GGGCGGGGTGAAGACATCG-------------------------------------------------------------
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------------------------------------------------------------TTGGCATCCCCGAGCGAGCG
GCTGCGACAATGGGTGCATGGGGCGCTCATGGCGGAAGATGGGGAGGATTTGAACTAGGATGAAAACGGAGTGGTAACTT
TCCGAATTTTCCACGGAAAA-TCAGAAACAGAGTGAAAATACAGAAACCAAAACAGAATATTGTGAAACAGAAATTGAAA
TGGAACACG-TTTTCCTGTGGAATATCCATGGAATTGATCCATGA-ATATCATTTTTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCAAG-AAAAAACGGAAACAGAGCG
AAAATACGGAAACAAAAACGGAATGCTGTGAAACGAAATCGGAAATGGAATAGCGTTTTCTGGTGGAACACCCACGGAAA
CGGATCCGTGAATGTGAAACTTCCTATTTTTACCACGGCGACGCGGGGCAGGGTGAAGACGGCATTGCTGTCCCTGAGTG
AGCGGCCGCCCCAATGGGTGTGTGGGGCGCTCATTGCGGAAGGTGAGAAGGATTTGAACTAGGATGAAAATGGAGTGGAA
ACTTTCGGGATTTTCCACGGAAAAAAGGAAACAAAGTGAAAA-TACGGAAACCAAGACAAAATTTGTGAAAGGGAAATTG
AAATGGAACAGCGTTTTCCGGTGGAACATCGACGGAAACGGATCCTTGAATATGAAACTTTCTGTTTTTACCATGGCGAT
GCGGGGCGTGGTGAAGACGACGTG-TGGTGTCCCCGAGTGAGCGGCCGCGGAAGTGAG----------------------
--------AAGGATTTGAACTAGGATGAAAATGGAGTGGAAATTGTCTGGATTTTCCCAGAAAAAACGGAAACTGAGTGA
AAATACGAAAACAAAAAGGAATACTGC------GAAACTGACGAAAATGGAAATGGAACAGTGTTTTCCGGTGGAACAGA
CACGGAAACGGATCTGTGAATAGGAAACTTTCTGTTTTA-CCATTGTGACGCGGGTTGGGGTGAAGATGGCGTTGGCATC
CCCGAGCGAGCAGCTGCGGCAATGGGTGCATGGGGCACTCATAGCGGTCTGTGGGAAGGGTTTGAACTAGGATGAAAATG
GAGTGGAAACTTCCCGGATTCTCCATGGAAAAACGGAAACAGAGTGAAAATACTGAAACAAAAACGGAATATTGCAAAAC
GG------AAATGGAACAGTGTTTTCCGGTGGAACAGCCATGGAAACAGATCCGTGAATACAAAACTTTCAGTTTTTACC
ATGGCTACAATGTGGCTCAGTCCAGCACTCAATAAAACTCACGTTGTGGCCAGTAATGACAACACCAATACCTAACAGAA
TCCCCAACCATCATCACTGTATTGTCCAGGAGCCTTTATTTGGCGCGGCTGGTTTATGAGTTATA-CACTGGCTTAGGAG
TCATCAAAAGGTTTTGTGGTCATATCAATTGAAATAGTTTGCTTGTGACTTACCCAATTGTTT-----------------
-----------------------TGCTGCGCACCGTATTTGCTTCGTATCTGTTCCCAGTAGTATTTATTTCCCTATTCA
TTTCCCAGGTTTTTATATTAGTTATGAAAACAAATGTGGCAGCACTCAGTTCCTTCTGTTTCTGCTCCGTTTCCATCCAT
ATTTGAACATGCGACTGGTACCAAGTTAGATGGGGGGAATTCTCTATTTATTGCATTGACCAACACGGGTGTGCTTATAT
ACACTTGAGAGGTACATGAGGATTACACGTTACAACGGAAATGCAGATGAGTGCCGATCACGGCGCGCGTGGGAGTGTGG
GCAAGTGCGTGCACCTGTACGCCGTGGGAACCGATCCTGGAGGTTGGCCTCCCAAGTGTGAGTCTGTACCGGGTTTCTAA
CATTCAATCACTTGACCCTTCTTGTGCCACTCTTTTAACCCAAAAAATACAAACCTGCCAGTCTGTTAAGTAAAATTGTA
TGACAAGCCACACGGGTAGTACATCAGAACTAGTATCTTGTTCTGTGTGTCATAGCTAACAGCCTTTTAATGACGAGCAT
TCATCTGTACTAAGGTTGAATATTGGTGTATATGCATACA
>SNPs
------------------------------------------------------S-------------------------
-------------------SS---------------------S-------------------------------------
-S-----------------------------------------------------------------------------S
-SSSSSSSSSSS----S-----------------------------------------------------------S--S
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--------------------------------------------------------------------S-----------
---S------------------S-----------------------S------------------------------S--
------------------SS-------------S--S-S-----------------------------------------
-------------------------------------S---------------------------S------S------S
--------S--------------------------------S----S------S--------------------------
-SS-----------------------------------------------------S-----------------------
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-S------------------------------------------------------------------------------
-------S---------------------------------SSSSS----------------------------------
--------------------------------------S-------S--------S------------------------
--------------------------------------S-----------------------------------------
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---------------------------------------------------------------------------S----
--------------------------------------------S-----------------------------S-----
------------------------------S-------------------------------S-----------------
----------------------------S---------------------------------------------------
----S---------------S-----------------------------------------------------------
--------S------------------------------------------------S----------------------
---------------S-SSSS-S---------------------------------------------------------
---------------------------------------------------------------S---------S------
-----------------S---------SSSSSS-----------------------------S-----------------
--------------------------S-----------------S---------------------S-------------
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-----------------------------------------------------------------S--------------
------S---------------------------------S----S-----S----------------------------
----------------------------------------------------------S-----------S----S----
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---S----------------------------------------------------------------------------
----------------------------SS-----------S--S------------------------S----------
-----S------------------------S-------------------------------------------------
------------------------------------------------------------------------------S-
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--S----S------------------------------------------------------------------------
----S--------------------------------------------S------------------------------
---------------------S----------------------------S-----------------------------
----------------------------------------
>forward_558
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----------------------------------------------------------CTGTTTTTACCATGGCGGCC--
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>reverse_2063
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--------------------------------------------------------------ATTTTCCGGTGGAACAGC
CA------------------------------------------------------------------------------
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>forward_1863
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---GGGCATGGTGAAAAGACGAC---------------------------------------------------------
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>reverse_2963
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--GAGTGTGTGCACCTGTACGC----------------------------------------------------------
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