>input_sequence_62170
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-----------------------ATGGGGAGGCCGCCGTGCTGCGACAAGGAGGGCGTCAAGAAGGGCCCCTGGACGCCG
GAGGAGGACCTCGTGCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCCACCAGGACCGGTAC
GCCACGCTTCCATCCA------------TCTTCTTCTTCTTCTTCTTGCCGGTTCTTGCCTTCGTTTGTACA-GATCGCA
TGGTTCTTTGTGGACTAAATCCCTCGATCGATGTGCAGGCCTGATGCGGTGTAGCAAGAGCTGCCGGCTCCGGTGGACCA
ACTACCTGCGCCCAGGGATCAAGCGCGGCAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTGCTC
GGCAACAGGTGGGCCGCGATCGCCTCCTACCTCCCCGAGCGCACCGACAACGACATCAAGAACTACTGGAACACGCACCT
CAAGCGCAAGCTGCAGGCGGGGGGCGACGCCGCGGCCAAGCCGGCGGCGCAGAGGCCTGCCTCCTCCTCCAAGGGCCAGT
GGGAGAGGCGGCTGCAGACGGACATCAACATGGCGCGCCGCGCGCTGCGCGAGGCGCTCACCACGCTCGACGACATCAAG
CCGCAGCAGCCCGACGCGGCCGACGGCGTCAATGGGCCTGCCGCAGCCGGCGCCGACAGCGGCAGCCCGGCGGCCTCCAG
CTCGTCGGCCGCGTCGCTGTCCCAGTGCTCGCCCTCCGCGGCTGGGCCGTACGTGCTCACCACCGCGAACATCTCGCGGA
TGCTCGACGGGTGGGCCAGCAAGGGTCGCAGCGCCGGGGCCGCGGCGGACAGCCCCTCTGGCTCGTCGGCGTCCGAGGTT
TCCTACGGCAGCGGCGCGGCCGCCCGTGCGCTGGGGTCCGCGTTCGAGTACGACAGGAAGCCGGCCGTTCTGGCGCCGGA
TCAGACGCAGCTGAACGCGATCGAGACGTGGCTCTTCGCCGACGACAACAGCAACAACGACCACCATGGCCACGGAGGCG
GCGGCAGCGGCCTGCTCGGCGTCGCCGCCA---TGGGTTACCCTTTCTAG------------------------------
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--
>chr2D_1_TraesCS2D01G163700
GCTCTCGCCTGGCATGCAATGCAATGCATGCATGCAGACGAACCCTTTGGAGCTGGAGGAGGTTTGCGTTGCGACAAACA
TGCTTAGCACACGCGCCGGGTTGGACTTTGGCCGTGGCTCGTGGCACCAAACTATTTCTTTTTTTGAGGGATGGCACCAA
ACTATTATAACGTGCAGTGTGATTGTTTTCGGATTTTTTTTCGTTTCCGTTTGGGAGACGGCAGCCGGAGGTAACGGGCC
ATGGCGTGGCATGCAGGTCGCAACATGC------------------------CATATGGTGCCACGCCACGGCCACGCAG
AGCGGGCGA----GCGATTAATGCACGCGGCATCCA-----TCGCAAGGCGGCATGCACAGTGTCGCAGCTGCAGCTGCA
GTGTACCGCCCCACCACCAGGCTGACTTTGCCACGAGACCGAAGTAAATGCACACTCACTAGCCCTGGCCCCTTTCCCTT
TCCCCCTGTCTCTGCACGCACCGCACCTCCCTA-----CCCTCTCTCTACATTTTGACTCCTCAAGGAAGGAGCCATGAC
CCGCAGGCTACAGTAGTACTACTAGCCAGGCTAGCTGTCTCGGTATCCTGGCCGTGGTAAAAGCGGCCGGGAGCTAAACA
GCCCAGGTAATCGCAAGGTCAGCGCTGTGCTTTGCTTTGGGCCTTGG-GCGTGACCACCGAGCGTAACCGTGTATATATA
CGCACCTACACCGCACCCCTGCTCTGGACCCTGC----AGCGAGCCTTGCTTGTCCTCACCCTC----------ACCCCG
CTCCAGCGCAGTGCACCACAGCCTTCGTCTCCACCTCA-----GTCC-----CCTCTCCTCACCTCACTCCCTTTGTAGC
GTAGCAGCGGCCCGCGTCACGCGATCCTGCTCGTATACGGCGCCGGTGGCTAGCTAGACTCCTTGTCCCCGCCCGCCCCG
CGCCTGCAGCAAAAGGCGACCGGCCCCTCGGTCCCTTTCTTTCTTTCATCGTCTCGTTCGGTGTGGCCGAGGTAGCGAGC
GGGGGAGCGGGCGAGACGTGAGCATGGGGAGGCCGCCGTGCTGCGACAAGGAGGGCGTCAAGAAGGGCCCCTGGACGCCG
GAGGAGGACCTCGTGCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCCACCAGGACCGGTAC
GCCACGCTTCCATCCA------------TCTTCTTCTTCTTCTTCTTGCCGGTTCTTGCCTTCGTTTGTACA-GATCGCA
TGGTTCTTTGTGGACTAAATCCCTCGATCGATGTGCAGGCCTGATGCGGTGTAGCAAGAGCTGCCGGCTCCGGTGGACCA
ACTACCTGCGCCCAGGGATCAAGCGCGGCAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTGCTC
GGCAACAGGTGGGCCGCGATCGCCTCCTACCTCCCCGAGCGCACCGACAACGACATCAAGAACTACTGGAACACGCACCT
CAAGCGCAAGCTGCAGGCGGGGGGCGACGCCGCGGCCAAGCCGGCGGCGCAGAGGCCTGCCTCCTCCTCCAAGGGCCAGT
GGGAGAGGCGGCTGCAGACGGACATCAACATGGCGCGCCGCGCGCTGCGCGAGGCGCTCACCACGCTCGACGACATCAAG
CCGCAGCAGCCCGACGCGGCCGACGGCGTCAATGGGCCTGCCGCAGCCGGCGCCGACAGCGGCAGCCCGGCGGCCTCCAG
CTCGTCGGCCGCGTCGCTGTCCCAGTGCTCGCCCTCCGCGGCTGGGCCGTACGTGCTCACCACCGCGAACATCTCGCGGA
TGCTCGACGGGTGGGCCAGCAAGGGTCGCAGCGCCGGGGCCGCGGCGGACAGCCCCTCTGGCTCGTCGGCGTCCGAGGTT
TCCTACGGCAGCGGCGCGGCCGCCCGTGCGCTGGGGTCCGCGTTCGAGTACGACAGGAAGCCGGCCGTTCTGGCGCCGGA
TCAGACGCAGCTGAACGCGATCGAGACGTGGCTCTTCGCCGACGACAACAGCAACAACGACCACCATGGCCACGGAGGCG
GCGGCAGCGGCCTGCTCGGCGTCGCCGCCA---TGGGTTACCCTTTCTAGCTAGCTCCACCGTGCCAAGTTATGAAGGTC
GATGTTCCCCTAGCTCTTGCGTTACTGATGCGAGGAGTGTGTTCACTGCATGCCCACCTAACGAAAACTACATAGATCCT
CTAGTAGTAGTACCTCGGTGGCTATGGCAATCAGCTTCCTTGGTCTCGTGT-TTACTTAGGATCTGCATAGTTTTCATTT
AGGGAAAAGAA-GGGAGGTTGTGGTAGCTTAGTGCTCCTGTTATTTACTGCTGTAACTGTGACTTGGTACTATGTTATGT
TCATGGGTTTTGGGTTTTGTACTTTGAAGTAGATCCGCTGTTTGCAAGCTGCAAAATGTGGACGAATAAAGTCAGTATGT
CAATTAGTACATGTCATGTCTTCTATCA---CTAATTAACCAGTATGCCAAATACAGGTACCTGTCATATACTCCTACTA
TATCTATCACTAATTAAGTTAGTAGGTTGATTAATCTTTGGAGCTTTTTCATGGTCAGTATGTCAACTACTGCCTGTCAT
ATATTTCCACCACTAA----------------------------------------------------------TTGGCC
AGTATGCCAAATAGTACTACCTGCCGTATATATGTATCACTAGTTATGCCAGTAAGTTGATTAATCAGCTATCTGACTTT
AAG-GGGGAAATAGTTTTATTTTATTTCTCTCTATTTCATGTT---TT---TTTGCTTCCTCGGAGTGGTCCACTACATG
ACAACGATTTGTCCCTCGGGTGATTTGTGGAGCTGGTACCAATTGATCAAATCTTAAATTTGACTTGGTGCTTGTATTTT
TCTACAATTGATTCGGCGTCTAAAGCTGTTCAAGATTTCGTAATTTTAGAAAATCTGAGAACAAACACTATTTTTCCTTT
TCACGCGTGAGAATAAACGCTAGATGAACAAAATATTACTACTCTCTC--TGTAAACAAATATAAGAGCATTTAGATCAC
AGTGAGCGTATCTAGATCTGCATGAGCATGTTTGTAACATTGACCATAAAGTAGTTAACTCTGAAATGACTTACACAATT
AT
>chr2A_205
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--------------------------------------------TTCCGTTTGGGAGACGGCGGCCGGAGGTAACGGGCC
ATGTCGTGGCACGCAGGTCGCAACATGA------------------------CATATGGTGCCACGCCACGGCCACGCAG
AGCGGGCGGGCGTGCGATTAATGCACGCGGCATCCATCGCATCGCAAGGCGGCATGCACAGTGTCGCAGCTGCAGCTGCA
GTGTACCGCCCCACCACCAGGCTGACTTTGCCACGAGACCGGAGTAAATGCACACTC--------TGGCCACTTTCCCTT
TCTCCCTGCCTCTGCACGCACCTCC-------CTATCTCCCTCTCTCTCTATTTTGACTGCTCAAGGAAGGAGCCATGGC
TCGCAGGCTACAGTACTCCTACCACCCTGGCTAGCTGTCTCGGTATCCTGGCCGTGGTAAAAGCGGCCGGGAGCTAAACA
GCCCAGGTAATCGCAAGGTCAGCGCCGTGCTTTGCTCTGGGCCTTGG-GCGTGACCACCGAGCGTAACCGTGTATATATA
CGCGCCTACACCGCACCCCTGCTCTGGACCCTGCAGCGAGCGAGCCTTGCTTGTCCTCACCCTCCTC---CCTCACCCCG
CTCCCTC-CAGCGCACCACAGCCTCCGTCTCCACCTCACCTCAGTCTAGCCTCCTCTCCTCACCTCACTCCCTTTGTAGC
GTAGCAGCGGCCCGCGTCACGCGATCCTGCTCGTATACGGCGCCGGTGG-----TAGACCTCTTGTCCCCGCCCATCTCG
CAACTGCAGCAAAAGGCGACCGACCCCTCCGTCCCTTTCTCCCTCTCA---TCCCGTTCGGTGTAGCCGAGGTAGCAAGC
GGGGGAGCGGGAAA-----GAGCATGGGGAGGCCGCCGTGCTGCGACAAGGAGGGCGTCAAGAAGGGCCCCTGGACGCCG
GAGGAGGACCTCGTGCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCCACCAGGACCGGTAC
GCA-----TCCGTCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCCGGTTTTTGTCTTCGTTTTCTGTGGATCACG
TGGTTGATTGTGGACTAAATCCCTCTGG---TGTGCAGGCCTGATGCGGTGTAGCAAGAGCTGCCGGCTCCGGTGGACCA
ACTACCTGCGCCCGGGGATCAAGCGCGGCAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCTCTGCTC
GGCAACAGGTGGGCCGCGATCGCCTCCTACCTCCCCGAGCGCACCGACAACGACATCAAGAACTACTGGAACACGCACCT
CAAGCGCAAGCTGCAGGCGGGGGGCGACGCGGCGGCCAAGCCGGCGGCCCAGAGGCCCGCCTCCTCCTCCAAGGGCCAGT
GGGAGAGGCGGCTGCAGACGGACATCAACATGGCGCGCCGCGCGCTGCGCGAGGCGCTGACCACGCTCGACGACATCAAG
CGGCAGCAGCCCGACGCGGCCGACGGCGTCAATGGGCCTGCCGCAGCCGGCGCCGACAGCGGCAGCCCGGCGGCCTCGAG
CTCGTCGGCCGCGTCGCTGTCCCAGTGCTCGCCCTCCGCGGCCGGTCCGTACGTGCTCACCACCGCGAACATCTCGCGGA
TGCTCGACGGGTGGGTCAGCAAGGGCCGCAGCGCCGTCCCCGCGGCCGACAGCCCCTCCGGCTCGTCGGCGTCGGAGGTT
TCCTACGGCAGCGGCGCGGCCGCCCGTGCGCTGGGGTCCGCGTTCGAGTACGACAGGAAGCCGGCCGTTCTGGCGCCGGA
TCAGACGCAGCTGAACGCGATCGAGACGTGGCTCTTCGCCGACGACAACAGCAACAACGACCACCATGGCCACGGAGGCG
GCGGCAGCGGCCTGCTCGGCGTCCCCGCCACCCTGGGCTACCCTTTCTAGCTAGCTCCACCGTGCCAAGTTATCAAGGTC
GATGTTCCCCTAGCTC--GCGTTAGTGATGTGAGGAGTGTGCTCACTGCATGCCCACCTAACGAAAACTACATAGATCCT
CTAGTAGTAGTACCTCGGTGGCTATGGCAATCAGCTTCCTTGGTCTCCTGTGTTACTTAGGATCTGCATAGTTTTCATTT
AGGGAAAAGAA-GGGAGGTTGTGGTAGCT-AGCGCTCCTGTTATTTACTGCTGTAACTGTGACTTGGTACTAT-----GT
TCATGGGTTTTGGGTTCTGTACTTTGAAGTAGATCCGCGGTTTGCAAGCTGCAAAATGTGGACGAATAAAGTCAGTGTGT
CAATTAGTACATGTCATGTCTTCCATCA---CTAATTAACCACTATGCCAAATACTGGTACCTGTCATATA---------
--TCTATCACTAATTAAGTAAGT----TGATTAATCTTTGG---------------AGTATGTCAATTACTGCCTGTCAT
ATATTTCCACCACTAA----------------------------------------------------------TTGGCC
AGTATGCCAAATACTGGTACATGTCGTATATATGTATCACTAGTTATGCCAGTAAGTTGATTAATCATCTATCTGTCTTT
AAGTGGGGAAATAGTTTCATTTTGTTTCTCTCTATTTCCTGTTTTGTTTTTTTTGCTTCCTCGGAGCAGTCCACTACATG
ACAACGCTTTGTCCCTCGGGTGATTAGCTGAGTTGATACCAATTGATCGAACCTCAAATTTGACTTGGTGCGTGTATTTT
TCTACAATTGATTTGGCGTCTAAAGCTGTTCAAGAGTTCGTACTTTTAGAAAATCTGAGAACAAACACTATTCCA----T
TCACGCGTGAGAATAAACGCTAGATGAACAAGATATTACTGCTCCTTC--TGTAAACAAATATAAGAGCATTTAGATCAC
TGTGGGCGTATCTAGATCTGCATGAGCATGTTTGTGACATTGATCATAAAGTAGTTAACTCTCAAATGACTTACACAATT
AT
>chr2B_236
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---------------------------------------------------------------------------GGGGC
ATGGCGTGGCATGCAGGTCGCAACATGCCACGCCATGCCCCCGGGAGAAGGCCATATGGTGCCACGCCACGGCCACGCAG
AGCGGGCGC----GCGATTAATGCACGCGGCATCCA-----TCGCAAGGCGGCATGCACAGTGTCGCAGCTGCAGCTGCA
GTGTACCGCCCCACCACCAGGCTGACTTTGCCACGAGACCGAAGTAAATGCACACTCACTAGCCCTGGCCCCTTTCCCTT
TCTGCCTGTCTCTGCACGCACCTCGCCTCCCTCTCTCTCCCTCTCTCTACAGTTTGACTCCTCAAGGAAGGAGCCATGGC
TCGCAGGCTACAGTAGTG---CTAGCCTGGCTAGCTGTCTCGGTATCCTGGCCGTGGTAAA-GCGGCTGGGAGCTAAACA
GCCCAGGTAATCGCAAGGTCAGCGCTGTGCTTTGCTTTGGGCGGGCGTGCGTGACCACCGAGCGTAACCGTGTATATATA
CGCACCTACACCGCACCCCTGCTCTGGACCCTGCAGCGAGCGAGCCTTGCTTGTCCTCACCCTCCTACTACCTCACCCCG
CTCCCTC-CAGCGCACCACAGGCTTCGTCTCCACCTCACCTCAGTCC-----CCTCTCCTCACCTCACTCCATTTGTAGC
GTAGCAGCGGCCCGCGTCACGCGATCCTGCTCGTATACGGCGCCGGTGG----CTAGACTCCTTGTCCCCGCCCGCCCAA
-GCCTGCAGCAAAAGGCGACCGACCCCTCCGTCCCTTTCTTTCTTTCATCGTCTCGTTCGGTGTGGCCGAGGTAGCGAGC
GGGGGAGCGGGAGAGACGTGAGCATGGGGAGGCCGCCGTGCTGCGACAAGGAGGGCGTCAAGAAGGGCCCCTGGACGCCG
GAGGAGGACCTCGTGCTCGTCTCCTACGTCCAGGAGCACGGCCCCGGCAACTGGCGCGCCGTCCCCACCAGGACCGGTAC
GCA-----TCCATCCATCTTCTT------------------------GCCGGTTCTTGCCTTCGTTTTGTGTGGATCGCA
TGGTTGTTTGTCGACTAAATCCCTCGATCGATGTGCAGGTCTGATGCGGTGTAGCAAGAGCTGCCGGCTCCGGTGGACCA
ACTACCTGCGCCCCGGGATCAAGCGCGGCAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCGCTGCTC
GGCAACAGGTGGGCCGCGATCGCCTCCTACCTCCCCGAGCGCACCGACAACGACATCAAGAACTACTGGAACACGCACCT
CAAGCGCAAGCTGCAGGCGGGGGGCGACGCCGCGGCCAAGCCGGCGGCGCAGAGGCCCGCCTCCTCCTCCAAGGGCCAGT
GGGAGAGGCGGCTGCAGACGGACATCAACATGGCGCGCCGCGCGCTGCGCGAGGCGCTCACCACGCTCGACGACATCAAG
CCGCAGCAGCCCGACGTGGCCGACGGCGTCAATGGGGCTGCCGCAGCCGGCGCCGACAGCGGCAGCCCGGCGGCCTCGAG
CTCGTCGGCCGCGTCGCTGTCCCAGTGCTCGCCCTCCGCGGCCGGGCCGTACGTCCTCACCACCGCGAACATCTCGCGGA
TGCTCGACGGGTGGGCCAGCAAGGGCCGCAGCGCCGGCGCCGCGGCGGACAGCCCCTCCGGCTCGTCGGCCTCCGAGGTT
TCCCACGGCAGCGGCGCGGCCGCCCGTGCGCTGGGGTCCGCGTTCGAGTACGACCGGAAGCCGGCCGTTCTGGCGCCGGA
TCAGACGCAGCTGAACGCGATCGAGACGTGGCTCTTCGCCGACGACAACAACAACAACGACCACCATGGCCACGCAGCCG
GCGGCAGCGGCTTGCTCGGCGTCCCCGCCA---TGGGTTACCCTTTCTAGCTAGCTCTACCGTGCCAAGTTATTAAGGTC
GATGTTCTCCTAGCTC--GCGTTACTGATGTGAGGAGTGTGTTCACTGCATGCCCACCTAACGAAAACTAGATAGATCCT
CT---AGTAGTACCTCGGTGGCTATGGCAATCAGCTTCCTTGGTCTCCTGA-TTACTTAGGATCTGCATAGTTTTCATTT
AGGGAAAAGAAAGGGAGGTTGTGGTAGCT-AGTGCTCCTGTTATTTACTGCTGTAACTGTGACTTGGTACTAT-----GT
TGATGGGTTTTGGGTTTTGTACTTTGA-GTAGATCCGCTGTTTGCAAGCTGCAAAATGTGGACGAATAAAGTCAGTATGT
CAATTAGTACATGTCATGTCTTCTATCACTACTAATTAACCAGTATGCCGAATTCTGGTACCTGTCATATA---------
----TATCACTAATTAAGTTAGT----TGATTAATCTTTGGAGCTCTTTCATGGTCAGTATGTCAATTGCTGCCTGTCAT
ATATTTCCACCACTATGCAGAGGCCGGGCTGCGTCCCTTTTCCAAAATATATATATATATATTTCCACCACTAGTTGGCC
AGAATGCCAAATACTAGTACCTGCACTATATATGTATCACTAGTTATGTCAGTAAGTTGATT-----TCTATCTGTCTTT
AAGGGGGGAAATAGTTTCATTTTATTTCTTTCTATTCTATGTT---TTTTATTTGCTTCCTCGGAGTGGTCCACTACATG
ACAACGATTTATCCCTCGGGTGATTAGAGGAGTTGGTACCAATTGATCAAATTTGAAATTAAACTTGGTGCATGTATTTT
TCTACAATTGTTTCGGCTTCTAAATCTGTTCAAGATTTAGTATTTCTAAAAAGTCTGAGAACAACCGGTATTTTTCCTTT
TCATGCGCGAGAATTAACACGGGATGAACAAAGTATTACTACTCCCACCGTGTAAACAAATATAAGAGCATTTAGATCA-
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--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-----------------
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--------S-----------------------------------------------------------------------
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--S-------------------S-S-------S---------------------------------------------S-
S----------------S---------S----------------------------------------------------
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----SS-S---S--------------------------------------------------------------------
-------------------------------------------------SSSS---------------------------
----------------------S------S--------------------------------------------------
-----------S--------------------------------------------------------------------
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--SSSSSS-----------------------------------------------------------SSSSS--------
-----S--------------------------------------------------------------------------
-------------S------------------------------------------------------------------
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---------------------------------------------------------S----------------------
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-----------------------------------------------------------------------------S--
------------------------------------------S-------------------------------------
-------------------------S-----------S--------------------S---------------------
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-----------------------S-------------------------------------------------S------
----------------SS------------S-------------------------------------------------
-----------------------------------------------S--------------------------------
-----------------------------S-------------------------------------------SSSSS--
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-------------------------------------------------------S---------------SSSSSSSSS
SS---------------------SSSS------------------S--------------------S-------------
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-------------S--S--------------------------------------------------S-------S----
-----------------S--------------------------------------------------------------
-------------------------S-S----S---------------------S----------------S--------
------------------------------------------S-------------------------------------
--------------------------------------------S-----------------------------------
S---S------------------------------S-------S------------------S-----------------
--
>forward_54
----------------------------------CAGACGAACCCTTTGGAGCT--------------------------
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>reverse_1272
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-----------------------------------------------------------------------AGATCGCAT
GGTTCTTTGTGG--------------------------------------------------------------------
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>forward_55
-----------------------------------AGACGAACCCTTTGGAGCTG-------------------------
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>reverse_1578
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---------------------------------------------------------TGCCTCCTCCTCCAAGGG-----
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>forward_1268
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------------------------------------------------CCGGTTCTTGCCTTCGTTTG------------
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>reverse_2178
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-----------------TGCGTTACTGATGCGAGGAG-------------------------------------------
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--
