>input_sequence_62166
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------------------------------------------------CACCATGCAACCAACCAGCCCCATCAAAAGCT
CTGTCCTCGGTCCTCCACGCGTGCACGCACCGCCCATTTACCTCACGCACCGGACATGCCGTCGCGATCACCGTCGTCGT
CGTCTTGGGCCGCACCCCCCGGCCTTGCCATGGCCACCGAGGCACGCGAGGAGGCCACTGCTGGCGGTTGCCTCCCCGCG
GACCAGTCCTGCTTTGCGCTCTCCGCGGGCCCACCCTACCCTTCGCGTCGTGCCGCTGCCGCCGCGCGAGCCTGCTGCAC
GACCACCTCCTACATCGTCGTTCTGAGCATCAGCTTCGGCTCCCTCCTCGCCATACTGCTCATCCTGTGTGTGATCCGGT
GGTACCTCGTGCACCGCTCCGCGCGCCAGCAGGAGGAGGAGGCCACGGCTGCGGCCACCGATGCGGCCCCGGGAATGGCC
AAGAAGCGGTCGGCGGGGCTGGACGCGGACGCCATCGCAGCGCTGCCCGAGTTTGTGTACCGGAAGGACGGCGGCGTCGG
CGAGGAGGAGGAGGA---CGCCGCAGAATGCGCCGTGTGCTTGGCCGTGATGGTCGACGGGGAGGCGGCGCGGCGGCTGC
CCAGGTGCATGCACGTGTTCCACCGGAGCTGCGTTGACGTCTGGTTGAGGGAGCACTCGACATGCCCGGTCTGCCGAGCT
GAGGTGGTCATCAGGCCGGCCGGAGTAGAGTGCGCCGGGAAGGAACATGTGGGCAGCACGTCACGGGCTGTCACGTCACC
GCCGCCGCGGGAGCAGGTTCTGGACGACGGGGAGAGGGACCTGGAGGCGCAGTAGGAC---GTAGTATTACTTGAGTAGG
AAGTATTATCGTTATTTT-TCATTTCCTTA--TTATGCGCGCGTCGTAGCACTAGCTCTAGCATATAGGTAGGCATTTGT
GGTCGTGAGTAGTATTTGGGGCTGGTTATCGCGAGTAGTATTCGGGAGTAGCTTTTTTCTTTTTTGCGGAATAACTGTTG
TAGCATTGTGTATGACAATA--AAATTAGAATGGCAATGCCAGAATGGACATTAAAGTTCTCACTCAGAT----------
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-----------------------------------
>chr1A_1_TraesCS1A01G126200
ATCTCCGCCACGGCACCACTGATGCATACTCTCTTGCTCACTGCCGGCGAGCAGCGAGCTCTATCCCACACCCGTGCTGC
TACGAAGGCCGCCTCCCAGAGCTGCGAACCGGCGAGAACCAATGCGGTAAGTGGGACGCCCCAGTGGAACAGCGCTCCTC
AGCGGCGGCGGGGATGGGCGGCACCGTGCTGAGGTCCAGCCCTCCTCGGCGGCGGCGAGGATGGGCATCACCTACCTTCC
TCAGCTGCGTTCGACGGGAGCTCACGGTGAACGACAA-TGGTTTTTTCTTGCAACATCCTCCTTGTTGCAAGAAAATTTT
ATGCACCATTATTTATGTTTCAAATCTCTCTTTCGTTGAAAAAGTTTCCGCAACATTAGCTTTGTTGCAGAAAAAATTCT
GTCACAGCACCTTTGTCGCATAAAAGTGGGGATAATTTTTT-TCTGCAACATCACCACAGTTGTAAAGTTTTCTGCAACA
ACATCATTGTTGCAAAAGTTATATCATGTCTCCGCACAAAGTCTCTGTTTTAGTAACAACTAGCTTGTTGCAATTTTTGA
CGCTCATGTGAGA--AGATCTAACGACGTGGGAGGTGGTTGATCTCCCCGAACTTCAACCAACGGCCGCGTAGTACGCAT
CTTGTTTCTATAACACCGCACTTGTTGCAGAAGGGAGGTGGGGAACGTGGGTGATACATTGGACGGCCAGCAGCGCGTCC
ATCCAACGACCAGCCAGGCGGCGGATGTTTCTAACTAATCCACTGGCCGACGCGTAGTACCCCCGCTTTAAGTTCCGTGC
AAATCAAGATTTCAATGCAGACATCCAAATCCTAGAG---TAAAACTGCATTCACGAAGA-TTGGCCGAGGTAAACGCAT
AGTACCAAATGCATAGTACCAAATGCGTTCCAACCTATTCTTGTCAAACGCGTTGGGTCCGGCGGTCAACTCCGCATCTC
AAGAACCCCGTCCGTCCCCTCCGCGCTTCGCTCGCTCCACACTCCCGACACCATGCAACCAACCAGCCCCATCAAAAGCT
CTGTCCTCGGTCCTCCACGCGTGCACGCACCGCCCATTTACCTCACGCACCGGACATGCCGTCGCGATCACCGTCGTCGT
CGTCTTGGGCCGCACCCCCCGGCCTTGCCATGGCCACCGAGGCACGCGAGGAGGCCACTGCTGGCGGTTGCCTCCCCGCG
GACCAGTCCTGCTTTGCGCTCTCCGCGGGCCCACCCTACCCTTCGCGTCGTGCCGCTGCCGCCGCGCGAGCCTGCTGCAC
GACCACCTCCTACATCGTCGTTCTGAGCATCAGCTTCGGCTCCCTCCTCGCCATACTGCTCATCCTGTGTGTGATCCGGT
GGTACCTCGTGCACCGCTCCGCGCGCCAGCAGGAGGAGGAGGCCACGGCTGCGGCCACCGATGCGGCCCCGGGAATGGCC
AAGAAGCGGTCGGCGGGGCTGGACGCGGACGCCATCGCAGCGCTGCCCGAGTTTGTGTACCGGAAGGACGGCGGCGTCGG
CGAGGAGGAGGAGGA---CGCCGCAGAATGCGCCGTGTGCTTGGCCGTGATGGTCGACGGGGAGGCGGCGCGGCGGCTGC
CCAGGTGCATGCACGTGTTCCACCGGAGCTGCGTTGACGTCTGGTTGAGGGAGCACTCGACATGCCCGGTCTGCCGAGCT
GAGGTGGTCATCAGGCCGGCCGGAGTAGAGTGCGCCGGGAAGGAACATGTGGGCAGCACGTCACGGGCTGTCACGTCACC
GCCGCCGCGGGAGCAGGTTCTGGACGACGGGGAGAGGGACCTGGAGGCGCAGTAGGAC---GTAGTATTACTTGAGTAGG
AAGTATTATCGTTATTTT-TCATTTCCTTA--TTATGCGCGCGTCGTAGCACTAGCTCTAGCATATAGGTAGGCATTTGT
GGTCGTGAGTAGTATTTGGGGCTGGTTATCGCGAGTAGTATTCGGGAGTAGCTTTTTTCTTTTTTGCGGAATAACTGTTG
TAGCATTGTGTATGACAATA--AAATTAGAATGGCAATGCCAGAATGGACATTAAAGTTCTCACTCAGATGTCACATTTT
GTTTTGT-AGGATATGTGTGCGCGC--TTAGAGCATCTCCAATAAATAATGATGTGGATGTATAAATAATAGTTATTTTA
CATCTTCAAGGCCAAAAAATACTGCTCCAATAGATAATGGAAAAGTCTTCTTTTCAACCGATTGATTTCTCATCTCGTTA
AGTCGCCTCTACCTTGCGCCACGTGTCCCAGCGGGACCGCCGCACCGCTTACCTCTCACTTCCTTATCTTCTCGGGTGAA
GCAATCTCATCCGCTTCACATGCTCGATCCCCTTCTCTAGCTCTCGCTTCCTTCTCTTTCTTTCCAAATCAACTTTGCCA
TTGGCGAGCTGGTGCTCCCAGGCCCGACCAGCCACCACTGATTGCCAACGCTTCATGTTGCATGGACTCTGCAAGCTGCC
AGATGGGGAGCGACGCCGTCGAGGTCACCAGTGCTGCGATGGCGGCGAGGCTGCAGCAGCTGGCATCTCGCTTCACTGCA
GCTACCGGCCGGTGCTGCAGAACATCGACGGACGACGCGGAGGGGGCGCCTGGCAAGCTGTGTTGCAACATCCACCTTGC
TGCATGCCGGGTGGGGCCCGACGCCGTCAAGTCACCGGTATTGCGATGCTGGCGGGACTACAGTAGCCGGTGAAGCAGAA
AGGGCTCGTCGGCGTTGTGATGAAGCATCGCGTGGGGGCTGCCAGAGATGCAGTGAAGCGCGCGGGGTCATTGAAGCTCC
GCCCACGTTGCAAT-AAGCACCGTCGGAGCTACAGTGAAGCGCCGCCGGAGTTGCAATGAAGCGCTGGGGAGGGGGGGCG
TTGAAGCTCGTCGTCGCGGCAATGAAGCTAAGGT-GGAGCTGCAAATTTTTTGAGGGCTAACGACAGTGGGAAAGGCTCC
CATTGACCTTGTTTATCTTTTTTAATAATAAATGTCAAGAGTCAACTGTACAAAATATTTACATATGAGGGTGTTAGAGT
AGGAGAGAGTGGGATGATGGGAGGACTAACACTAG
>chr3A_1
ATCTCCGCCACGGCACCACTGATGCATGCTCTCTCGCTCACTGCTGGCGAGCAACGAGCTCTACCCCACACCTGTGCTGC
TACGAAGGCCGCCTCCCGGAGCTGCGAACCGGCGAGAACCAGTGCGGCAAGTGGGACGCCCCAGTGGAACAGCGCTCCTC
AGCGGCGGCGGGGACGGGCGGCGCCGTGCTGAGGTCCAGCGCTCCTCGGCGGCGGCGAGGACGGGCAGCACCTACCTTCC
TCGGCTGCGTTCGACGGGAGCTCACGGTGAACGACAA-TGGTTTTTTCTTGCAACATCCTCCTTGTTGCAAGAAAATTTT
ATGCACCATTATTTATATTTCAAATCTCTCTTCTGTTGAAAAAGTTTTCGCAACATTAGCTTTGTTGCACAAAAAATTCT
GTCACAGCACCTTTGTTGCATAAAAGTGGGGATAATTTTTT-TCTGCAACATCACCACAGTTGCAAAGTTTTCTGCAACA
ACATCATTGTTGCAAAAGTTATATCATGTCTCCGCACAAAGTCTCTGTTTCAGTAACAACTAGCTTGTTGCAATTTTTGA
CGCTCACGTGGGGAGAGATCTAACGACGTGGGAGGTGGTCGATCTCCCCGAACTTTAACCAACGGCCGCGTAGCACGCCC
CTTGTTTCTGCAACACCGCACTTGTTGCAGAAGGGAGGTGGGGAACATGGGTGATACATTGGACGGCCAGCAGCGCGTCC
ATCCAACGGCCAGCCAGGCGGCGGATGTTTCTAACTAATCCACTGGCCGACGCGTAGTGCCCCCCTATTAAATT------
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-----------------------------------
>chr6A_1
ATCTCTGCCACGGCACCACTGATGCATGCTCTCTCGCTCACTGCCGGCGAGCAGCGAGCTCTACCCCACACCCGTGCTGC
TACGAAGGCTGCCTCCCGGAGCTGCGAACCGGCGAGAACCAGTGCGGCAAGTGGCACGCCCCAGTGGAACAGCGCTCCTC
GGCGGCGGCGGGAACGGGCGGCGCCGTGCTGAGGTCCAGCGCTCCTCGGCGGTGGCGAGGACGAGCAACACCTACCTTCC
TCAGCTGCGTTCGACGGGAGCTCATAGTAAACGACAAATGGTTTTTTCTTGCAACATCCTCCTTGTTGCAAGAAAATTTT
AGGCACCATTATTTATGTTTCAAATCTCTCTTCCATTGAAAAAGTTTCCACAACATTAGCTTTGTTGCAGAAAAAATTCT
ATCACAGCACCTTTGTTGAATAAAAGTGGGGATACTTTTTTTTCTGCAACATCACCACAGTTGCAAAGTTTTCTGCAACA
ACATCATTGTTGCAAAAGTTATATCATGTCTCCGCACAAAGTCTTTCAA----TAACAACTAGTTTGTTGCAATTTTTGA
CGCTCACGTGGGG--AGATCTAACGACGTGGGAGGTGGTCGATCTCCCCGAACTTCAACCAACGACCGCGTAGCACGCCC
CTTGTTTCTGCAACACCACACTTGTTGTAGAAGGGAGGTAGGAAACGTGGGTGATATATTGGACGGCCAGCGGCGCGTCC
ATCCAACGGCCAGCCAGGCGGCGAATGTTTCTAACTATTCCATCGGCCGACGCGTAGTGCCCC-----------------
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>chr1D_785
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--------------------------------------------------------------------TAAGTTCGTTGC
AGACCAAGATTTCAGTGCGGACATCCAAATCCAAATACACTAAAACTGCATTCACGAAGATTTGGCCGAGGTAAACGCAT
AGTACCAAACGCGTTC-------------CCAACCTATTCTTGTCAAATGCGTTGGGTCCGGCGGTCAACTCCGCATCTC
AAGAACCCCGT-CGTCCCCTCCGCGCTTCGCTCGCTCCACACTCTCGACACCATGCAACCAACCAGCCCCATCAAAAGCT
CTGTCCTCGGTC------GCGTGCACGTACCGCCCATTTACCTCACGCACCGGACATGTCGTCGCGATCACCGTCGTCGT
CGTCTTGGGCCGCACCCCCCGGGCGCTCCATGGCCACCGAGGCACGCGAGGAGGCCACTGCCGGTGGTTGCCTCCCCGCG
GACCAGTCCTGCTTTGCGCTCTCAGCGGGCCCACCCTATCCCTCGCGTCGTGCCGCTGCCGCCGCGCGAGCCTGCTGCAC
GACCACCTCCTACATCGTCGTTCTGAGCATCAGCTTCGGCTCCCTCCTCGCCATACTGCTCATCCTGTGTGTGATCCGGT
GGTACCTCGTGCACCGCTCCGCGCGCCAGCAGCAGGAGGAGGCCACGGCTGCGGTCACCGATGCGGCCCCGGGAATGGCC
AAGAAGCGGTCGGCGGGGCTGGACGCGGACGCCATCGCAGCGCTGCCTGAGTTTGTGTACCGGAAGGACGGCGGCGTCGG
CGAGGAGGAGGAGGAGGACGCCGCAGAATGCGCCGTATGCTTGGCCGTGATGGTCGACGGGGAGGCGGCGCGGCGGCTGC
CCAGGTGCATGCACGTGTTCCACCGGAGCTGCGTTGACGTCTGGTTGAGGGAGCACTCGACATGCCCGGTCTGCCGAGCT
GAGGTGGTCATCAGGCCGGCCGGAGGAGAGTGCGCCGGGAAGGAACATGTGGGCAGCACGTCACGGGCTGTCACGTCACC
GCCGCCGCGGGAGCAGGTACTGGACGACGGGGAGAGGGACCTGGAGGCGCAGTAGGAC---G---TATTACTTGAGTAGG
AAGTACTGTCGTTGTTTTTTCATTTCCGTA--ATATGCGCGCGTCGTAGCACTAGCTCTAGCATATAGGTAGGGATTTGT
GGTCGTGAGTAGTATTTGGGGGTGGTTATCGAGAGTTGTATTCGGGAATAGCTTTTTTC-TTTTTGCGAAATAACTGCTG
TAGCATTGTGTATGAGAATA--AAATTAGAATGACAATGCCAGAATGGACATGAAAGTTCTCTCTTAGATGTCACATTTT
GTTTTTGAAGGACATGTGTGCGCGCGCTTAGAGCATCTCCAATAAATAATGATGTAGATGTATAAATAATA---------
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>chr1B_843
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-------------------------------------------------ATTCACGAAGA-TTGGCCGAGGTAAACGCAT
AGTACCAAACGCGTTC-------------CCAACCTATTCTTGTCAAATGCGTTGGGTCCGGCGGTCAACTCCGCATCTC
AAGAACCCCGTCCGTCCCCTCCGCGCTTCGCTCGCTCCACACTCTCGACACCATGCAACCAACCAGCCCCATCAAAAGCT
CTGTCCTCGGTCCTCCACGCGTGCACGCACCGCCCATTTACCTCACGCACCGGACATGTCGTCGCGATCACCGTCGTCGT
CGTCTTGGGCCGCACCACCCGGCCGCGCCATGGCCACCGAGGCACGCGAGGAGGCCACTGCCGGCGGTTGCCTCCCCGCG
GACCAGTCCTGCTTTGCGCTCTCAGCGGGCCCACCCTACCCCTCGCGTCGTGCCGCTGCCGCCGCGCGAGCCTGCTGCAC
GACCACCTCCTACATCGTCGTTCTGAGCATCAGCTTCGGCTCCCTCCTCGCCATACTGCTCATCTTGTGTGTGATCCGGT
GGTACCTCGTGCACCGCTCCGCGCGCCAGCAGGAGGAGGAGGCCACGGCTGCGGCCACCGATGCGGCCCCGGGAATGGCC
AAGAAGCGGTCGGCGGGGCTGGACGCGGACGCCATCGCAGCGCTGCCTGAGTTTGTGTACCGGAAGGACGGCGGCGTCGG
CGAGGAGGA---------CGCCGCAGAATGCGCCGTGTGCTTGGCCGTGATGGTCGACGGGCAGGCGGCGCGGCGGCTGC
CCAGGTGCATGCACGTGTTCCACCGGAGCTGCGTTGACGTCTGGTTGAGGGAGCACTCGACATGCCCGGTCTGCCGAGCT
GAGGTGGTCATCAGGCCGGCCGGAGGAGAGTGCGCCGGGAAGGAACAAGTGGGCAGCACGTCACGGGCTGTCACGTCACC
GCCGCCGCGGGAGCAGGTACTGGACGACGGGGAGAGGGACCTGGAGGCGCAGTAGGACATAG---TATTACTTGAGTAGG
AAGTATTATCGTTGTTTTT-CATTTCCTTATTATATGCGCGCGTCGTAGCACTAGCTCTAGCATATAGGTAGGGATTTGT
GGTCGTGAGTAGTATTTGGGGGTGGTTATTGCGAGTAGTACTTGGGAGTAGCTTTTTTC-TTTTTGCGAAATAACTGCTG
TAGCATTGTGTATTATGAGAATAAACTAGAATGGCAATGCCAGAATGGACATTAAAGTTCTCACTCAGATGTTACATTTT
GTTTTAT-AGGACATGTGTGTGCGC--TTAGAGCGTCTCCAATAAATAATGACGTAGATATATAAATAATAGTTTTTTTA
CATCTTGGAGGCCAAAAACAA-TGCTCCAATAGAT---------------------------------------------
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>chr3B_2174
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-----------------------------------AATGGAAAAGTCTTCTTTTCAACCGACTGATTTCTCATCTCGTTA
AGTCACCTCTGCCTTGCGCCACGTGTCCCAGCGG-ACCGCCGTACCGCTTACCTCTCGCTTCCTTATCTTCTCGGGGGAA
GCAATCACATCCGCTCCACACGCTCGATCCCCTTCTCTAGCTCTCGCTTCCTTCTCTTTCTTTTCAAATCGACTTTGCCA
TTGGCGAGCTGGTGCTCCCAGGCCCGGCCAGCCACCACTGATTGCCAACGCTTCATGTTGCAGGGACTCTGCGAGCTGCC
GGATGGGGCGCGACGCCGTCGAGGTCACCGGTGCTGCAATGGCAGCGGGGCTACAGCAGTTGGCATCTCGCAGCTGAGGC
GCTGCCGGCCGGTGCTGCAGAACGTCAAAGGACGACGCGGAGGGGGCGCCTAGCAAGCTGCATTGCAGCATCCACCTTGC
TGCATACCGGATGGGGCGGGCCACCGTCAGGTAACCGGTATTGCGATGTCGGCGGGACTGCAGCAGCTGATGAAGCAGAA
AGGGCTCGTCGGCGTTGCGATGAAGCATCGCGTGGGGGTTGCCGGAGCTGCAATGAAGCGCGCGGGGTCGTTGAAGCCCC
GCCCACGTTACAATGAAGCACCGTCGGAGCTACAGTGATGTGTCACTGGAGTTGCAATGAAGCGCC------GGGGGACG
TTGAAGCTCGCCGTCGCGGCAAAGAAGCTAATGCCGGAGCTGCAA-----------------------------------
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>chr7A_2261
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------------------------------------------CACCGCTTACCTCTCGCTTCCTTATCTTCTTGGGTGAA
GCAATCCCATCCGCTCCACATGCTCGATCCCCTTTTCTAGCTCTCGCTTCCTTCTCTTTCTTTCCAAATCAACTTCACTA
TTGGCGCGCTGGTGCTCCCAGGCCCGGCCAGCCACAATTTATTGCCAACACTTCATGTTGCAGGGACACTGCGAGCTGCC
GGATGGGGGGCGACGCCGTCGAGGTCACCAATGCTGCGATGGCGGCGGGGCTGCAGCAGCCGACATCTCGCAGCTGAGGC
GCTGCCAGCCGGTGCTGCAGAACGTCGACGGATGACGTGGAGGGGGCGCCTGGCAAGCTTCGTTGCAGCATCCACCTTGC
TGCATGCCGAATGGGGCCCAACGCCGTCAGGTCACAGGTATTGCGATGCCCGTGGGACTGCAGCAGCCGGTGAAGCAGAA
AGGGCTCGTCGGCGTTGCGATGAAGCATCGCGTGGGGGCTGCCGGAGCTGCAGTGAAGCGCGCGGGGTCGTTGAAGCTCC
GCCCACGTTGCAAT-AAGCACCGCCGGAGATACAGTGAAGCGTCGCCGGAGTTGCAATGAAGTGCC-----GGGGGGACG
TTGAAGCTCGTCCTCGCGGCAATGAAGCTTAAGCCGGAGCTGTAA-----------------------------------
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>SNPs
---------------------------S------S----------------------------S----------------
-----------------S-----------------------S-----S--------------------------------
--------------S-------S-----------------S--------------------S-----S------------
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--------------------------------S-----------------------------------------------
----------------S----------------------------------------------S----------------
--------------------------------------------------S-----------------------------
------S---S-S--------------------------S---------------------------------S----SS
---------SS---------------------------------------------------------------------
--------S-------------------------------------------------S-----SSS--------SS---
-S-S----------S---S-------------S-SSS-------------------------------------------
---------S--S-SSSSSSSSSSSSSSS-------------------S-------------------------------
--------------------------------------------S-----------------------------------
----------------------------------------------------------S---------------------
------------------------SS-----------------------------------S------------------
-----------------------S-----------------S--------------------------------------
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-----------------------------------------------S--------------------------------
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-------------------------S------------------------------------------------------
------------------S-------------------------------------------SSS---------------
-------------S------------------S----------------------------------------S------
---------------------S-------------------------------------S--------S--------S--
---------------S----------------------------------------------------------------
-----S------S------------------------------------------S------------------S-----
------SS----------SS-S---------------------------------------S------------------
----S-----S-----------------------S----------------------S----------------------
------S--------S----------------------------------------------------------------
--------------------------S-----------------------------------S---------S-------
S-------S--------------------------------------S-----------------------SS-SSS-SS
---S-------------------S------------------------------------S------S------------
----------S------------------S-------------------S---------S---S----------------
-----------------S-------------------------S---S---------------------S----------
------------------------------------------S----------------------SSSSSS------S--
-------------------------------S-S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_797
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---------------------------------------------------------TACCCCCGCTTTAAGTTCCG---
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>reverse_2704
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---------------------------------------------------------------TAGCCGGTGAAGCAGAA
AGG-----------------------------------------------------------------------------
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