>input_sequence_62154
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-------------------------------------------------ATGACTCCTCGGCG-----------------
-------------------TTGTCCGATGCCTCCTCGGCGTTGCTGGTTCTTGGCGTACGTTTGGTGGCTGCCACTGATG
ATCGTGGCGGTCGACGACCAGAAGGGCGAAGGCTGCTCGGCCAAGAGATGCAGCAA---CTACACCATCTCCCACCCATT
CTGGCTCGTTGACGACCAGACGGGAAGATCATGTGGCCACTTGGGCTTTGAAGTCACTTGCCGTAGCAACCGCACTCCAA
TTCTTCGGAGCTCTGTGGACGACGGTTTTGAAATAACCGGCATCTCCTACGAGCAACGGAGTTTGTGTGTCGTCGATCTA
TACAAGCGGAATCACCTGCACG---ACACCAACAGTTGCCATGTCCCGAGCTGGAACGCCTCCGACCAATTGGGCGTCCT
GTTTAGGGTCGACCCCGTCAACCTGAACCTCATCTTGTACAATTGCACCAAGGC---GGCGGC---GGCGATGGTGGCAC
GTCGAGACAGGGCGATGGTGCCGATAAGATGCGGGAACAGGAGCAATGCCTTTGTGCGCGCAGGAGGGCATTACGATGCT
ACGGACGACTATGCCAGATACTATATGGAGGGCTGCGAAGCAACCGTTGTGCCGGTGCTGGGCGTTCACGGCATGGCGAA
CGCGAGCAACTACGAGCAGCTCATCAGTGGTGGATTCCTCCTGACATGGCAGACCGGTAAGCTTGCTTCTCAGATTA---
GCAC-TTCTTTTCACTCCATG-----------------------------------------------------------
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-----------------------------------------------------AAATCTTGTATCACCTACTCCCTTGGT
CCTATAATATAAGATCTTATTACACCCAATCTATTCATTATAGGACGG----------------------ACTGTATGCT
AGCCCATTTTAGTTGAATTATGGTGTGTTAGCCCATGATGATAAGTCAATGGTCTTGTCCCCCCGGAGATAGCGTAAAGT
TATGGAAAAATCCGT-----------------------------------------------------------------
----------------------TT-----GAATAAAAAAGATTAAGCCATGAAAGACACTAATCATTGTATGTATTTTAT
GCTCCTAAGTCCTTGAAGAATTTT-TTATTTCTAACTCAGCCAAATCGCAC-----------------------------
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-----------------------------AATACAAAAGCTAACACTGCAAAATAAATTAATGTAAACTCTAGGTTGA--
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>chr3A_1_TraesCS3A01G048900
ATTCAACGTGGATTATGGTGCTTCATTAACCTCGCGCCGGCACAAGAGATTGTCTAGAGGTGAAAACAATATTGGGCTGG
GCTAGGGCCAGATCTTGACCCTGAAATATTCTGATTGATGATACTGTACTGTAGAATGCTTTTACTTCTTGTACTTTTAC
TGATGAATCTAGGAGCTCAAATGTTGAGTCTCATAATCTAGCTTGGCATGCTCTTACGTTGGATCAAGGACAGCACCTTT
GGTTGGGTCAGCGACATGATTCAAACGTAATACCAGTTTCTATACCACTTGATGAATAAAGTCTAGCAGATTTCTCAAAA
AGAAAAAAATCAGCCTGGGGACTTCTTTTTGTATAGAACTCGAGGAACTTTATTCGACAAAGATCACTAGAAAAGCCAAC
GGTGAAATCTCCATGGGGCCTAGTGGCTAAGGATCTAACGGTTTATTCTACACAATATTTTGGAATTAGTTTCAATAAAA
AATATTTTATGCCGTGAAAGACCCTAATAATTGTACTTGTATGTATTTGATGTTTTATATGTCCTTGTAGAATTCGTTAT
TTCTAATTCAGCCAAATTGCACATAACAAAAGATAATACCGCAAAATAAATTAAAGTTATCTGGATCTACTACCTGCATC
CCACAATATAAAAATAGTTTTTGAAGCTATTAATTAGTTTGAACTGGACTTCTGCACGCAATTTCTAAACTGTCCAGCCC
AGTACAAGTGTGAATGTTATGCTGAGACAAGAGTCTACTAGATAGACGACAAGAGCACAATGTAGCCGGAACCGAAAGAA
TCTGACTAAGCATCTTGGTCCCCATCACATCAGGGGCTCACGGTGGTCATGCCTTACCCGTCAAAGTGA------TCATT
CGGGGGATTTGTGGACGATGATAGGTTGCCTCCATTTCCCTGTCAAATACGCCCGCCATTGCACGGCTATTCGCTCGTTC
ACATA---TATCATTCGCACCTCACAGCAGTCCCCAGCCCCCCAAAACCATGACTCCTCGGCG-----------------
-------------------TTGTCCGATGCCTCCTCGGCGTTGCTGGTTCTTGGCGTACGTTTGGTGGCTGCCACTGATG
ATCGTGGCGGTCGACGACCAGAAGGGCGAAGGCTGCTCGGCCAAGAGATGCAGCAA---CTACACCATCTCCCACCCATT
CTGGCTCGTTGACGACCAGACGGGAAGATCATGTGGCCACTTGGGCTTTGAAGTCACTTGCCGTAGCAACCGCACTCCAA
TTCTTCGGAGCTCTGTGGACGACGGTTTTGAAATAACCGGCATCTCCTACGAGCAACGGAGTTTGTGTGTCGTCGATCTA
TACAAGCGGAATCACCTGCACG---ACACCAACAGTTGCCATGTCCCGAGCTGGAACGCCTCCGACCAATTGGGCGTCCT
GTTTAGGGTCGACCCCGTCAACCTGAACCTCATCTTGTACAATTGCACCAAGGC---GGCGGC---GGCGATGGTGGCAC
GTCGAGACAGGGCGATGGTGCCGATAAGATGCGGGAACAGGAGCAATGCCTTTGTGCGCGCAGGAGGGCATTACGATGCT
ACGGACGACTATGCCAGATACTATATGGAGGGCTGCGAAGCAACCGTTGTGCCGGTGCTGGGCGTTCACGGCATGGCGAA
CGCGAGCAACTACGAGCAGCTCATCAGTGGTGGATTCCTCCTGACATGGCAGACCGGTAAGCTTGCTTCTCAGATTA---
GCAC-TTCTTTTCACTCCATG-----------------------------------------------------------
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-----------------------------------------------------AAATCTTGTATCACCTACTCCCTTGGT
CCTATAATATAAGATCTTATTACACCCAATCTATTCATTATAGGACGG----------------------ACTGTATGCT
AGCCCATTTTAGTTGAATTATGGTGTGTTAGCCCATGATGATAAGTCAATGGTCTTGTCCCCCCGGAGATAGCGTAAAGT
TATGGAAAAATCCGT-----------------------------------------------------------------
----------------------TT-----GAATAAAAAAGATTAAGCCATGAAAGACACTAATCATTGTATGTATTTTAT
GCTCCTAAGTCCTTGAAGAATTTT-TTATTTCTAACTCAGCCAAATCGCAC-----------------------------
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-----------------------------AATACAAAAGCTAACACTGCAAAATAAATTAATGTAAACTCTAGGTTGAAA
TTACCAAGAAGGGCTTTTACCTCGCTTTAT-----ATATAAAGCAACACAACCAAACAGATACATGATGATGAGAAGATC
CTCTTACAAAGCAAATCAAGAAAAATACAA---TAAGAATGCAGGAGCGTCCACGCCCTACCATAGAGCAACC----TAG
ACTATCGACAAGGAAGGAGACTCGCCGCCAAGAGAAATCGCCGGACCTCGTTTAGCCACTCACGCCAAGTTGCCGCCGAA
GAGGACCCCATGCCCTCCCGCTCCGGAATGTGGGGCCTGAGC--CTGCCTACGGAAAACAAGCACTATGAGTAGAACCAA
ACGAGGACCTGTG-AAATGGACTTGTCCCCTGAGAAGAAAGAATTTTGCAC-------------TGCGCAACCTCAATAA
TCGATCGGTGTACGCAGATGAAACTTA-TTTTATAGGATATATTTTTACCTGCCATGTGTGAATTTGCCAAAG--ATT--
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-----------------------------------------------------------------------AGAAAAAAG
GAAATGTGAAAATAAGTAAAAATCAAAGAACTGAAATTGAATATCTAAAAGTCTAAAGGAAAAGACCAAACAAAAAATGA
--------------------------------------------------------GCTCCCGAGTGTATCCTGTATTCT
ATCAGGGCATCCCTTCACTCAATCAAATAATCAATCAATAGTAACCAAGGATAGGCCTGAAGTTTATCGTTTGGCAGACG
TTAGTGCATCCGGCCAGCGCGTCACTTCCTCCCTCCTGCTTGCATGCCCAAGATATGGTGGGCGACTTGACCATAGCCCC
TATACTAGTCAAATTGACACGTGCTGACAAGCTT-GTTTTGGTTACGTTTTCTCCTGACCAGTCGTCAATTTACCGTCAA
AGTGGTTTACCCCGGAAAATTTTACAAGTCATTGCTTACCACCAGTTCGTGGAGGATGACCGCTTGGTCCAAATTTCCAG
TCAAATGTTCCGGCCTACGCAATAATACCCCGCTCGCTTGCCGGCGTCCGCTTATATGTTATGGTTCGTGCTTATTCTCT
CATCCCCATGATCACCTATCCAGCCACCTCCATTTTCAT
>chr3A_846
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---------------------------------------------GTCATGGCTTACCCGTCCAAGTGCAAGTGGTCATT
CGGGGGATTTGCGGACGATGATAGCTTGCCTCCATTTCCCTGTCAAATACGCCCGCCACAGCACGGATGTTCGCTCGTTC
ACATGTAGTATCATCCACACCTCACAGCAGTCCCCAGCCCCCCAAAACCATGACCGCCACCGATTCAGTTGGTCACTGGA
GCCTTATTTCCAAATCTTATTGCCCGATGCCTCCTCGGCGTTGCTGGTTCTTGGCGTACGTTTGGTGGCTGCCACTGATG
ATCGTGGCGGCTGCGGACCAGCAAGGCGAAAGCTGCTCCGCCAAGAGGTGCGGGGAGTACTTCACCATCTCCCATCCATT
CTGGCTCGCTGACAACAAGACCGGAAGATCATGTGGTCCCTTGGATTTTGAGGTCATTTGCCGCAGCAACGGTAGCCCAG
TTCTTCGGAGCTCTGGGGACGACGGATTTGCAATCGTCCACATCTCCTACGAGGAACGGAGTTTGTTCGTCGTCGATCTA
TACAAGCGGAATCACTTGCACAACAACACCAACAGCTGCCATGTCCCGAGCTGGAACGCCTCCGACCAACTGGGCCGCAT
GTTTAGGGTTGAACCCATCAATCTGAGCCTCGTCTAGTACAATTGCACGAAGGC---GGACGC---GGCGGCGGCTGCAC
GTCGGGACAGGGCGCTGGTGCCGATAAGATGCGGCAACGAGAGCAACGCGTTTGTCCGCGAAGGAGGGCGTTATGATGCC
GCCGATGACTATGCCCGATACCATATGGAGGGCTGTGAAGCCACCGTCGTGCCGGTGCTGGGCGTTCATGGCATGGCGAA
CGCGAGCAACTACGAGCAGCTCATCAGTGGTGTATTCCTCCTCACATGGCAGACTGGTAAGCTTGCTTCCCAGATTATTA
GCTCATTTCTTTGGCTTCCTG-----------------------------------------------------------
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-----------------------------------------------------GA-------------------------
----------------------------------------------------------GTCTTGTACATTATGGTGTGTT
AGTGGGTTTTGGTTCAATTACGATGTGCTAGCCAACTATGACAAGTCAATGGTCATGTTCCGT-GGAGATAGTGCAAAGT
TATAGGAAAAAAATCAATTATTAAATTTCTACAC--TTTTAATATAAAAACCCTTTTAGTTTCGCTAACCCGTTTCAATA
---------------------------------AAAAAAGGTTAAGCCCTGAAAGACACCAATGCTTGTATGGATTTTAC
GTTCTCAAGTCCTTGAAGAATTTTGTTATTTCTAACTCAGCCAAATCGCAC-----------------------------
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-----------------------------AATACAAAAGCTAACACTGCAAAATAAATTAGTGTAAAGTCTAGGTTGAAA
TAGCAAAGAAAGGCTTTTACCCTGCTTTAT-----ATATAAAGCAACACAACCAAACCGATAAATGATGATAAAGAGATC
CTCTTACAAAGCAGATCAAAAAAAATACAAGAATAAGAATGCAGGAGCGTCCACACCCTACCATAGATCAACCTAGCTAG
ACTACCGACAAGGAAGGAGACTTGCCGCCAAGAGGAATTGCCGGACCTCGTTTAGCCACTCACGCCAAGTTGCCGCTGAA
GAGGACCCCATGCCCTCGCGGTCCGGAACGTGGAGCCTGAGC--CTGCCTACAGAAAACGAGGACAGTGAGTAGAACCA-
ACGAGGACCCGTG-AAATGGACTTGTCCCCTGAGAAGAAAGAAATTTGCAC-------------TGCACAACCTCAATAA
TCGATCGGTGTACGCAGATGAAACTTAATTTTATAGGATATATTTTTACCTGCCAATTGTGAATTTGCCAAAT--ATTAG
AATTTAGATGCTAGATAACCGACAAGAGCATGTAGTAGCAGGTACAAGAACCAGCCTAAAGCATCATGTTTGCTGTCACA
TCAGGGCACACAGAGT-CACGGAGGTCACGTTGATGACTTACCCGTCAATGGGGTTAGAAA---TTCAAAAGCAACGCCT
TACCAGTCCAAAGGTGATA----GGGACGATGA----TAGCTTTGCCCCGATTTT-CCGGTCAAATGTTCCGACCATAGT
AGGTACTCCGCTCACTCGCCCGTCCACATATATCATTCTTCGAGCTTCGAGCACGG--TATCCTCTCATAGTTGCATACG
TCTCCCCCACCTCGTCACCGCCAAATCTCTCTTTTCCAATGGCTACTATTAGCTGCTGGTTCTTGGTGTTCATCTTGGTA
GTATGGTGGTTGCCGCTGCTGCTCGCCGGGCCTGAGGAGCAGCAAGT---GGAAAACTGCCCGGCCAAGACGTACGGCAA
CCTCACCATCTCCCACCCGTTCTGGATCCTCGACATGGAGACTGTTAGAGTAATCTTGATTAGAGATGCTAGTACTGATT
AGTAGTCAATTAGATTAGGAGAATCACAAAGTAATAGTCCGGCTCGGATGCATATTGGTAGTACTATTAGGAGTCCTAGT
CGTTTGTACTAGGTTAGCTGGTAGTATACGCGTGAGTGTCCGAATTGTATTACGACATCTAGTACGTATAGGATTAGGTC
TGTGTTGGGTCGGTGGCTGCTGTGCATATATATATGCACTTGGCCGTGAATTTTGTAACGCGGAGAAAACATAGAATAAA
GAGAGGAGAAACAAAGGGCACGACAAGAGTCTTTGGCTATCAATTATCTTGTTGCGTCTCCGTCGTAATTTGATGTGATC
GATTCTGTGGGCGGAATTCCAACACTTGGTATCTAGAGCAAGGTCGATTTGAAGGTGTGCTTGCCCCGGGGTCGCGACCC
GACTAGCGCCTCGGGGCGGGCGATATGGTCGCTGGGTGGTGCAGCGACGATGAAGAGCGCGCCATGATGTTCCTGGGTGA
TGCAGGGATGAGGAGGGATCTGGCGATCGTCGTTCGGCGGAGCGACAAGAAGGGAGACGGCGGGCTGTCGTCGGCAAGGC
GGCGGATGGAGATCGTTGACGGGAGCGGTGGTGCGGTGATGCAGTGCCGGAAAGTCGTCAAGATGGTCATCCATGGGAGT
TAGAGTCAAGGAGTTGTGCGGGTTAGCACGATCAGTCGGTAAGTCGTCGTCGTGTCAGCGTCGTCATGTCCAAGTGCTCG
TCTCTGTGAGGAGGCGTTGAAGATGAAGCATGCCCAGGTCGTCTATGTGTCTCGACGAGAGGATCAAGTTCAAATATGTG
GGGGCGGTAAACCGGTGAAGGTGAGTCTCTTCAATGAGGCCATGTCTCTACATGAGGCTGGAGTGCATGGTGTAGTGCAC
AGGGTGGTGTGATCCACAAGGAGCCGGCATGTATCTTGCTAGGATGGATAGTGAAGTCCATCGGGTGGTGTTTTCCACAG
GTTACTAGCGAGGCTGGGTAGTCTAAGACATATTTGAGGTGGTCCGTAAATTCGCCAAGTCGAAATTGGAGGAAAGATTG
TTGCAAATGATCTAGCCGGCAATTTGACTTGTCGTGATGCGAGCGGATGAGTCGAAAAAAGGTGAATCATCAACAAGCCA
AGACCAAAAAAGCACGGAAGACAAAGTGTGTTAAGATTAGGGAGAGATTGTTAGAGTAATTTTGATTAGAGATGCTAGTA
CTGATTAATAGTCAATTAGATTAGGAGAATCACAAAGTAATAGTCCGGCTCGGATGCATATTGGTAGTACTATTAGGAGT
CCTAGTCGTTTGTACTAGGTTAGCTGGTAGTATACGCGTGAGTGTCCGAATGTATTAGGACATCTAGTACCTATAGGATT
AGGTCTGTGTTGGGTCGGTGGCTGCTGTGCATATATATATGCACTTGGCCGTGAATTTTGTAACACGGAGAAAACATAGA
ATAAAGAGAGGAGAAACAAAGGGCACAACAAGAGTCCTTGGCTATCAATTATCTTGTGTGCGTCTCCGTTGTAATTTGAT
GTGATCGATTTTGTGGGCGAAATTCCAACAGAGACTACAAGATCGTGTGGTTCATTGGATTTTGAGGTCGTTTGCCTCAA
AGACAGTTTTCCAATCCTCCGGAGCTCTGTGCTCTTCGG---------CTTTGCAATCATGGACATCTCTTACGAGGAAC
ACAGTTTGCATGCCGTTGATCTACACAAAGAGACATACTTCAAAAAAGAAGAGGAAGACTTCAACGTCTCCAAAAGC---
TGCCATTTCCCGAGATGGAACGCCTCCGTCAAACTGGCACCCCCGTTTAAGGTCACCCCG--------------------
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-------------------------------------------------------CCAACGTGAACCTCATCTTCTACAA
CTGCACCAAGACAGT---------------GGCGCTGGTGGAGGTGAGATGCCCGAACGCGAGCAGCATGTTTGTTCGCG
CGGGAGTGCCCTACGACGCGACTGGGACCTACGCCAC-CTACGCATTGGAGGGCTGCGATGCCACCGTCGTGCCGGTGAT
GGGCTCGTCCTCGGGCTCGGCGAACGCGAGCAACTACGAGCAGCTCATCGAAGATGGCTTCCTCCTGACATGG-------
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>chr3D_846
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---------------------------------------------GTCATGGCTTACCCGTCCAAGTGCAAGTGGTCATT
CGGGGGATTTGTGGACGATGATAGCTTGCCTCCATTTCCCTGTCAAACATGCCCGCCACAGCACGGCTGTTCGCTCGTGC
ACATA---TATCATTCACACTTCACGGCAGTCCCCAGCCCCCAGAGCCC-------------------------------
------TTTCGAAATCTTATTCTCCGATGCCTCCTCGCCGTCGCTGGTTCTTGGCCTACGTTTGGTGGCTGCCACTGATG
ATGGCCGCGGCCGAGGACCAGAAGGGCGGTAGCTGCTCGGCCAAGAGGTGCGGCAA---CCACACCATCTCCCGCCCATT
CTGGCTCGTTGACGACAAGACGGGAAGATCATGTGGTCCCTTGGATTTTGCGGTCACTTGCCATAGCAACCGCACTCCAC
TTCTCTGGAGCTTTGGGGATGACGGTTTTGAAATAACCCGCATCTCCTACGAGGAAGGGAGTTTGCGCGTCGTCGATCTA
TACAAGAGGAATCACTTGCACAACAACACCAACAGCTGCCATGTCCCGAGCTGGAACGCCTCCGACCAACTGGGCCGCCT
GTTTAGGGTGGACCCAGTAAACCTGAACCTCGTCCTGTACAATTGCACCAAGGT---GGCGGC---GGC---GGTGGCAC
GTCGGGAGAGTGCGCTGGTGCAGATAAGATGTGGCAACAAGAGCAACGCATTTGTCCGCGCAGGAGGGCGTTATGATGCC
ACCGACGACTATGACAGATACCATATGGAGGGCTGCGAAGCCACCGTCGTGCCGGTGCTGGGCGTTCATGGCATGGCGAA
CGCGAGCGACTACGAGCAGCTCATCAGTGGTGGATTCCTCCTCACATGGCAGACTGGTAAGCTTGCTTCTCAGATTA---
GCAC-TTCTTTTCGCTCTATGAAATCTTATCAGTTTTGCTAAAGCACATCTAGATGTGCCGTAAGTATTGCATATCTAAG
TCTTATATCATTAATCTTACGTTGAGATTCGTGTGGATATTTTTTTTTCTTTTTCTTTTTTCTCTTTATACTTGATTCAC
CCACTTAGATGTGCAATAACTAGAGCACATCTAGATGTGCCCTAAACACACCCAAATCTTATATCATCTACTCCTTCCGT
CTCATAATATAAGATCTTATTACACCCAATGTACTCATTATAGGACAGAGGGAGTATTATTTTTTACATTACGGTATGTT
AGCCCATTTAGGTTGAATTATGGTGTGTTAGCCCATGATGATAAGTCAATGGTCTTGTCCCCT-GGAGATAGCGTAAAGT
TATAGAAAAAGT-TCAATTACTGAATTTCAGGGTTTTAATA-----------------------CAAATTTTCGCCCCAT
TTAGTCTCAAATTAAAAATCCGTT-----GAATAAAAAAGATTAATCCATGAAAGACACTAATCATTGTATGTATTTTAT
GCTCCTAAGTCCTTGAAGAATTTCGTTATTTCTAACTCAACCAAATCGCAC-----------------------------
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-----------------------------ATTACAAAAGCTAACACTACAAAATA-------------------TTGAAA
TTACCAAGAAGGGCTTTTACCCTGCTTTATGTATAATATAAAGCAACACAATCAAACCGATACATGATGATGAGTAGATC
CTCTTACAAAGCAGATCAAGAAAAATACAAGAATAAGGATGCAGGAGCGTCCACGCCCTACCATAGAGCAACCTA----G
ACTACCGACAAGGAAGGAGACTCACCGTGAAGAGAAATGGCCAGACCTTGTTTCGCCACTCAAGCCAAGTTGCCGCCAAA
GAGGACCCCATGCCCTTCCGCTCCGTAAAGTGGAGCCTGAGCGCCTACCTACGGAAAACGAGTACTGCGAGTAGAACCA-
ACGAGGACCCGTGAAAATGGACTTGTCCCCTGAGAAGAAAGATATTTGCACCCAAATTCTAAAATGCGCAACCTCAATAA
TG----------------------------------------TTGTTACCTGCCAAATCCGAATTTAGTCCAAAGATTAG
AATCTAGATTCTGGATAACCGACAAGAGCATGTAGTAGCAGATACAAGAACCAGCATAACGCAGCATGTTTGCTGTCACA
TCACGGGCACAGAGCCACA--GAGGTCGCGTTGATGGCTTACCTGTCAATGGGGTTAGAAATTCTTCAAAAGCAACGCCT
TACCTTACCTGTCCAAAGGAGTGGGGACGATGA----TAGCTTTGCCCCGATTTTTCCAGTCAAATGTTCCGACCATAGT
AAGTACTCCGCTCACTCGCCCGTCCACATATATCATTCTTCGAGCTTGGGCCACGG--TATCCTCTCATAGTCGCCTACG
TCTCCCCCACCTCGCCACGGCCAATTCTCTTTGTTCCAATGGCTACTACAAGCTGCTGGTTCTTGGTGTTCGTCTGGATA
GTATGGTGGTTGCCGCTGATGCTCGCCGGGCATGAGGAGCAGCGGCAACCGGAAGGCTGCTCGGCCAAGAGTTGCGGCAA
CCTCACCATCTCCGACCCATTCTGGCTCGCTGAGAGTGAGGCGGG-----------------------------------
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--------------------------------------AAGGTCGTGTGGTCCCTTGGATTTTGCGGTCGATTGCTGGGA
AGACAGTATTCCAATTCTCAAGAGCTCTGCATTCATTGG---------CTTCGCCATCAAGGGCATCTCGTACGAGGAAC
GCAGTTTGCGCGTCGTTGATGCACATA---------------------AAGTGCAAGACTTCAACGTCTCCAACAGCAGC
TGCCACTTCCCGGGATGGAACACCTCCGTCAAACTGGCACGGCCGTTCAAGGTCAGCCACGCCAATTGTAGGTTCCGACT
AGCCCTAGCTCTAGCCCTCTCCTCCCTCGCACTGATCTCTCTCTCTCTCCGGCCGTGGCTCGAACCAGCGACGACGAGGT
GGAAGGAGGAAGAAGGAGCACACAGTGGACACGGTGAGGTTTTTCCCGTCGCAACAACGCCTGTTCCCGAGCTCGTACTC
ATCACCTCCGTCAACAACAAACACACGGGCGGGAGGGTTTTATACCCGCGTCCATCGGCGCACCACACCGCGCCCCGACG
CACCCCCCTCCGCGCACTCCCCACGTCCCTGCGCTCCCGGCCCGCGCTCCCGCCGCGCACACACGCGATCCGCGCGACCA
GGTCCCGTGCCCTGACGTGGTCTACACGCGCGCCCGTTGCGCCAACGATCACACACACATGCCACACCTGCATGGACACG
CCCATGCATCTCCTACACGCACGCACGCACACCTACGTCGCGGACCCGATGCGTCCAACGTGCCCGGTGCGCGCCCATAC
ACGCGCCCGGCTCGTTCGACACCTCGCCGCGACTTATTGCCTAACATTCGCGCCCTCAGTCGCGGCTCAGAGCAGACCGG
CGTCCTCGACGTCGCCGTCGACCAGCAGCGCATGCTCCGCCGCCGGCGCCTTCTTCCACTGCGGGCACTCGCGCTTGAAA
TGCCCGCGTTCACCGCACTTGTAGCAGCGGCCGCGCCGGTTCCCACCGAAACCCGATGCCTCGCTGCGCGCCCCGTCGTC
GTCGTCCTCTCCGTGCACACCGCCCAGACGCCGCTCGCGCGCCCGCCATTGTGCCACGGTGTACAGCAGCTGCCCTTCCG
TGCGCTCGCCGCCCGCCTGCCCGCGCCGACGTAGTCGTTCGTCGAATGCCTTCAGGCGCCCGAGCGCGTCCTCGAAGAGC
AGCGTGTTCAGGTCGCAAAACTGCTCCATTCCAGCGACGGCGGCGTACAGACGATCCGGGACCGAGTCCAGGAGCTTCTT
CACCATCGCCGAGTCCTCCAGCGTCGACCCCAGCCCGGCGTAGCGCGCCGCCATGCCGCTGATCTTCCCCGCGAACGCGT
CCAGCGACTCGTCGCTCGCCATACGCAGGAGCTCGAACTCCCCCCGGAGCGTGCCGAGCCGCGCCGCGCACCCGCGGTCC
GCACCGACGAAGCGCGCCTTGAGGCTGGCCCATATTTCCGCCGACGACCTTCTTACCAATCTGAATCTCATCTTCTACAA
CTGCACAAAGCCGCCGGCGCATCAGGACGGGGCGCTGGCGGAGGTGAGACGG--GAACACGAGCAACATGTTTGCTCGTG
CGGGAGTGCATTTCGATGAGACGGGGAACTACGGCGGGCTACGCCTTGGAGGGCTGCGATGCCATCGTCGTGCCGGTGAT
GAACTCG---TCGGGCGAGTCGAACGCGAGCGACTACGAGCGGCTCATCAGCGATGGCTTCCTCTTGACACGGGAGCTCC
CTTCTCCACGTAAGTTCACCCGCAAACCAAATCATCTTTTCATCTGGTTCCTTGCTAGCTAGCTAGGACGTACCCGCGGT
GCGATTTGTTTGGATGTTCATGCTTCTGCTTGCCCAAGTTGCGGGGCGACTTCAGGTAAACGTGTGCGGTGGATTCCGTT
CTCCCTTCCAAGGCACTAGGCAGAGTACTCTCACCGGGAACAAAAGGGGGGCAACATTGTTGTACTTTGTCCATTGACAA
ACGGCTAGAATCCTTCTAGTCAGCATCTAATTGCCTGTAACCCTTTGAACGTTTAGCATTATTGAGCATGTGTGACATAT
CAAAAATAAAATTGCCATCATCTTCTTAAATAATACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGAATAAAAGGGA
ATGTATCTAGATGTATTTTAGTTCTAGATACATCCCTTTTTATTCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTA
CTAAAACTGTCATCCTGTTAATAATAAAAGTGCCATGCCAATAATAATAATAATAATGATCCCAGATCTCAATAATAAAA
TTGTCATCATGTTAATCATAAACTGCCATCCTCCTAATAAAAAATGCCATCTTGTTAATAGTAAAATTGTCATGCTATTA
ATCATAAAACTGTCATCTTCTTGATAATAAAAACGACATGTTAGTAGTTATTAAATTGCTATGCTCTTAGTAATAAAAAT
GCCATGTTATTGGTTATTAAAATGCCATGCTCTTAGTAATAAAACTTTCATGCTAAAAGTAAAATAAAAATTTCAAAATT
ACCATGAATAAGTGAATTTTTTTTCCCAAAAGCTTGACATGGAGGGCATTACAAAAAACCCACATGGAGGGCATTACAAG
AAACTCTAGAAAATGCCATGGTACCTATAATAAAAATGCACATGGCAAGTTTAGAAAAAATTCCAACTACTTCCTCCGTC
CCAAGTGTCAAAAGCGATCTTATATTAGTAGTGTCAAAAACGCTCTTATATTATGGGACGGATGGATAAAAGGTAGGGAT
TTTTTGTTCTTCAAAAATGGAAAAAAATCTGGATCTTCAAAAAAAATTTATGAAAAAATGAATTAGAAAAGAATTTAGCT
TCAAATACATAAAAAAAGTTTAGTATATGTATGCACAAAACCTGCTTAAGACCAACTGGTATAGCATATGCGCCTCCCAT
GGCAGGTCTTGAGTTTGAGTTTCGCAAATAACAGACCTTGGGCAAAAATTTATTGCGAGAAAAAAAAAGTGAGTGTTCAC
TAGGAAACGCCTCACAGGGAACGACTCCAGCAAATCTATGTGGCGTTAGCTTTGTGCCGACCATGCAACGGTCAGGAAGG
CGTTTGCCAGGGTTGTTCGAAGTAAAATGGCGAACTATAGTTTGGATAAATAAGGCGGTAGTGCTTTACAAAGAAAAAAG
GAAATGTAATAATAAATAAAAACCAAAGAATTGAAAGTCTAA-----------TAAAGGAAAAGACCAAACAAAAAATGA
ACGAAAAGGAAAACACAGAAAATAATTAACATAAGATAAAACAACCCATCAATTGAGCTCCCGAGTGTATCCTCTATTCT
AGCAAGGCATCCCTTCACTCAATCAGGTAATCAATCAATAGTAACCATGGATAGGCCTGAAGTTTATCGTGTGGCCGATG
TTAGCTGCAGTTCCCAATACTAGTCAAAGTGGTTTACCCCGGAAACTTT-------------------------------
--TACAAGTCAAATTGACACGTGCTGACAGGCTTTGTTTTGGTTGCGTTTTCTCCTGACCACTCCATAC---ACCGTCAA
AGTGGTTTACCCCGGAAACTTTTACAAGTCATTGCTTACTAGTTT---GTGGTGGATGGGCGCTTGGCCCAAATTTCCAG
TCAAATGCTACGGTCAACAGTACTCGG-CCGGCTCGCTTGCCGGCGTCCCCTTATATGTTATGGTTCGTGCTTATTCTCT
C--------------------------------------
>chr3D_1014
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--------------------------------------------------------------G-----------------
-------------------TTGTCCGATGCCTCCTCGGAGTTGCTGGTTCTTGGCGTACGTCTGGTGGCTACCACTGATG
ATCATGGCGGCTGCGGATCAGAAGGGCGATAGCTGCTCGGCCAAGAGGTGCGGCAA---CCACACCATCTCTCACCCATT
CTGGCTCGTTGATGACAAGACCGGAAGATCATGTGGTCCCTTGGATTTTGCGGTCACTTGCCGTAGCAACGGCACTCCAG
TTCTTCAGAGCTTCGGGGATGAAGGTTTTGAAATAACCAGCATCTCCTACAAGGAACGGAGTTTGCGCGTCGTCGATCTA
TACAAGCAGGATCACCTGCATAACAACACCAACAGCTGCCATGTCCCGAGCTGGAACGCCTCCGACCAACTGGGCCGCCT
ATTTAGGGTCGAACCCGTCAATCTGAAGCTCGTCTTGTACAATTGCACGAAGGCAGAGGCAGC---AGC---GGTGGCAC
GTCGAGACAGGGCGATGGTGCCGATAAGATGCGGCAACAAGAGCAATGCGTTTGTCCGCGCAGGAGGGCGTTATGATGCT
ACCGATGACTATGCCAAATACCATATGGAGGGCTGCGAAGCCACCGTCGTGCCGGTGCTGGGCGGTCATGGCATGGCGAA
CGCGAGCAACTACGAGCAGCTCATCAGTGGTGGATTCCTCCTCACATGGCACACCGGTAAGCTTGCTTCTCTGATTA---
GCACGTTCTTTTGGCCTCATG-----------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GAGTCTTGTATCGCCTTTTCTTTTTTA
TTACGTTATATGGTGTGCTGGCCCC-------------------------------------------------------
-------TTCAGTTGAATTACGGTGTGTTAGCCCACAATAATAAGTCGATGGTCTTGTCCCCC-GTCGATAGCGCAAAGT
TATAGGGGAAAAATCAATTATTGAGATTCTACCCTTTTTTAATACAAAATCCATTTTAGTTTTGCAAATTTTCACCCCAT
TTATTCGCAAATTTTATAAAAATATGTTGGAATAAATAAAATTAAGCCCTGAGAGACACAAATCATTGTATGGATT----
---------TCCTTGGAGAATTTTGTTATTTCTAAGTCAACCAAGTTGCATAGACAAAAAAAGCTTTTTTTTTTGAAAAA
AAAAGAGGATGACCCCAGACCTCTGCATCTGGGAGATGCATGCAGTCACTTTATTAATCATTCACAAAGACCTTACTCCC
TCCGGTCCTTTTTACTCTGCATATTAGGTTTGTCTAAAGTCAATCTCATCCAACTTTGACCAAGTTTATATAAAAAATTA
TTGACATTTACATAACAACACCAATATCATTAGATTCATCTCGGAATATATTTTCATATTATATTTATTAGATATTATAG
ATGCTAATAATTTCTCATATAAATTTGGTCAAACTTAGCTAAGTTTGACTTTCGGCAAATCCAATGTGCAGAGTAAAAAG
GACCGGAGGGAGTATAAAATAATACACAGATAACGAAAGCTAACATTGCGAAATAAATTAATGTGAACTCTAGGTT----
--------------------------------------------------------------------------------
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-----------TG-AACAAGACTTGTCCCCTGCAAAGAAAGATATTTGCACCCCAACTCTAAAATGTGCAACCCCAATAA
CCGATCAGTGTACAGAGATGAAACT--ATTTTTTACCGGATATTGTTACCTGCCAAGTGTGAATTTTGTCCAATGATTAG
AATTTAGATGCTAGATAACCGATAAGAGCATGGAGTAGCCAGTACAAGAACCATCCTAAAGCATCATGTTTGCTGTCACA
TAACGGGCATTTGGAGCCACGGAGGTCACGTTGATGACTTACCCGTCAATGGGGTTAGAAA---TTCAAAAGCAGCGCCT
TACCAGTCCAAAGGTGATA----GGGACGTTGATAGCTAGCTTTGCCCTGATTTT-CCAGTCAAATGTGCTGACCAT---
-GGCACTCCACTCGCTCGA-CGTCCACATATATCATTCTTCGAGCTTGGACCACGGTATATCCTCTCATAGTCGCGTACG
TCTCCCCCACCTCGCCACAGCCAAATCTCTCTGCTCCGATGGCTACTACAAGCTGCTGGTTCTTGGCGTTCGTCTGGGCA
GTATGGTGGCTGCCGCTGATGCTCGCCGTGCCTGAGGAGCAGCAAGG---GGATGGCTGCTCGGCCAAGAGGTGCGGCAA
CCTCACAGTCTCCGATCCATTCTGGCTCCCTGACTGGGAGGCGGG-----------------------------------
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--------------------------------------AAGATCATGTGGTCCCTTGGATTTTGAGGTCGGTTGCTTCCA
TGACAACATTCCATTTCTCCGGAGCTCTGGATTCGATGGATACAGTGGCTTTTCAATCATGAATATCTCCTACGAGGAAC
GCAATTTGCGTGTCGTTGATCTACACAAAAAGAGC---------------------GACTTCAACGTCCCCAACGC---C
TGCAATTTCCCGAGATTGAACACCTCCAGCAAGCTGGCACTGCCTTTTAAGGTCAACAACT-------------------
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-------------------------------------------------------CCAACCCGAATCTCATCTTCTACAA
CTGCACCAAGGCAGCGGCTAATCCGGACTGGGCGATGGTGGAGTTGACATGCTTGGACGCGACCAACGCGTATGTTCGCG
CGGGAGTGCGCCACGACGCGACCGGGGCCTACGCA-GGCTACGCTTTGGAGGGCTGCGATGCGATCGTCGTGCCGGTGGT
GAGCTCG---GCTGGCTCGGCGAACGCGAGCAACTACGAGCAGCTCATCCAAGATGGCTTCCTCCTGACATGG-------
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>chrUn_1015
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-------------------TTGTCCGATGCCTCCTCGGCGTTGCTGGTTCTTAGCCTACGTTTGGTGGCTGCCACTGATG
ATTATGGCGGCGGCGGACCAGCAAGGGGAAGGCTGCCCGGCCAAGAGGTGCGGGGA---CTTCACCATCTCTCATCCATT
CTGGCTCGCTGACAACAAGACCGGAAGATCATGTGGCCCCTTGGATTTTGAGGTCATTTGCCGTAGCAACGGCAGCCCAG
TCCTTCGGAGCTCTGGGGACGACGGATTTGCAATCATCCGCATCACCTACGAGGAACGGAGTTTGCGCGTCGTCGATCTA
TACAAGCGGAATCACTTGCACAACAACACCAACAGCTGCCATGTTCCGAGCTGGAACGCCTCCGACCAACTGGGCCGCCT
GTTTAGGGTTGAACCCATCAATCTGAAGCTCGTCTTGTACAATTGCACGAAGGC---GGAGGC---GGCGGCGGTGGCAC
GTCAGGACAGGGCGCTGGTGCCAATAAGATGCGGCAACAAGAGCAACGCATTTGTCCGCGCAGGAGGGCGTTATGATGGT
ACCGATGACTATGCCAGATACCATATGGAAGGCTGTGAAGCCACCGTCGTGCCGGTGCTGGGCGTTCATGGCATGGCGAA
TGCGAGCAACTACGAGCAGCTTATCAGTGGTGGATTCCTCCTCACATGGCAGACCGGTAAGCTTGCTTCTCAAATTA---
GCAC-TTCTTTTCGCTCCGTG-----------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GAATCTTGTATTACCTACTCCCTCCGT
CCCGTAATATAAGATCTTATTACACCCAATTTACTCATTATAGGACGGAGGGAGTATTGTTTTTTACAGTACGGTATGTT
AGCCCATTTTGGTTGAATTATGGTGTGTTAGCCCACGATGATAAGTCAGTGGTCTTGTCCCCC-GGAGATAGCATAAAGT
TATGGAAAAA----------------------------------------------------------------------
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>chr3B_1055
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-----------------------------------------------------------GTTTGGTGGCTGCCACCGATG
CTCACCGGAGCTGAGGAACAGCAAGGCGAAGGCTGCTCAGCCAAGAGGTGCAGCAA---CCACACCATCTCCCACCCATT
CTGGCTCGTTGATGACAAGACAGGAAGATCATGTGGTCCCTTGGATTTTGAGGTCACTTGCGGTAGCAACCGCACTCCAG
TTCTTCGGAGCTTCGGAGACGACGGTTTTGCAATAATTCGCATCTCCTACAAGGAACGGAGCTTACGCGTCATTGATCTA
TACAATCGGAATCACCTGCACG---ACACCAACAGCTGCCATGTCCCGAGTTGGAACGCCTCCGACTAACTGGGCCACAT
GTTTAGGGTCGAGCCTATCAATCTGAACCTCTTCTTGTACAATTGCACGAAGGC---GGCAGCAATGGC---GGTGGCAC
GTCGGGACAGGGCGCTGTTGCCCATAAGATGCGGCAACGAGAGCAGCACATTTGTCCACGCAGGAGGGCGTTACGATGCC
ACCAACGACTATGCCAAATACTAT--------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----------S-----S-----------
------------------------S---------------------------------SS--------S-----------
----------------S-------------------------------------SS-SSSSS------------------
--------------------------------------------------------------------------------
----------S---S--------------------------------S--------------------------------
----------------S---------------------S-----SS-----S---------------------------S
---------------S----------------------S--------------S-------------S------------
-----------------------------------S---------------------------------S-----SS---
-------------------------------S--------------------------------------SS--------
----------------------------------S----S---------S-----S-------------S----------
--S--------------------------------------S-----S--------------------S-----------
------------------------------------------S-------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--S---------------------------S--S--------------------------------------S-----S-
---------------------------------------------------------------S----------------
----------SSSSS-----------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------SS----------------------------------S----------------S-----
-------------S------------------------------------------------------------------
----S---------------------------------S-----------------------------------------
----------------------------S----S-------------------------S--S---S------------S
---------S---------------------------------S------------------------------------
-------------------------------------------------------S----------------S-------
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-------S-S-----S------S-------S-----S-SS-SSSSSSSSSSSS---------------------------
-------------------------------------------------------------------------S------
-S--S--------------------SS--------------------S----------------------S----S--S-
----SSSSSSSSS---SSS-SSSS-SSSS-SSS-SSSS-SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS---S-----------------------S--------------S----------------S--SSS-SSSS--------
------------------S--------------------S-SSSSSSS----S-----SS-------S------------
-------S-S---S-S--SSS-SSSSSS--S------------------S------------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_829
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---------GCATCTTGGTCCCCATCACA---------------------------------------------------
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>reverse_8823
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----------------------CACTTCCTCCCTCCTGCTTG--------------------------------------
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---------------------------------------
