>input_sequence_62119
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--------------------------------------ATGCACATGGCGATGGCGGGCAGTGGCATTAGCGCGGCAGCG
AGCGGCAATGGCAAAGCCAAGGTGGTCATTGTGATGGGCGCCACGGCCACCGGCAAGTCCAAGCTGGCCGTCGACCTCGC
GCTGCGGTTCGGCGGCGAGGTCGTCAACTCGGACAAGATCCAGGTCCACGACGGCCTGGACGTGGTCACCAACAAGGCCA
CCGCCCGCGAGCAGGCCGGGGTGCCGCACCACCTGATCGGCGGGGTGCACCCCGACGCCGACTACGCCGCCGCGGACTTC
CGGCGCGACGCCACCCGCGCCGTGGAGTCAGTGCTCGCGAGGGGCCGCCTGCCGATCATCGCCGGCGGGTCCAACAGCTA
CCTCGAGGCGCTGCTGGACGGCGAGCCGGGATTCCGCCGGCGGTACGAATGTTGCTTCCTGTGGGTGGACGCCGACACGG
CGGTGCTGGAACGGTACGTCGGCGACCGCGTCGACTGCATGGTGGAGCAAGGGCTCGTCGGCGAGGTGCGGGGATTTTAT
CGGACGGACGCGGACTACTCCCGTGGGATCCGGAGGGCCATAGGCGTGCCGGAGATGGACACCTACTTCCGGATGGAGGC
CGCCGGTGCGCTGGACGGAGACGACGGACGACGGGCCGGGCTCCTCGAGGCCGCCGTCGACGAGATAAGGGAGAACACGT
GCAGGCTGGTGTGCAGTCAGCTCCGGAAGATCCACCGGCTACGATGCCTGCCGGGGTGGAGCATCCGCCGCCTTGACGTC
ACCAGGGTGCTTTCGCTCAAGGTCGGGAAGGTGAAGGACGAAGAAGCGGAGCGCACCCTGTGGGAGTCGGATGTCGTCGG
GCCTGCCGCGCGCGTCGTTGAGACGTTTCTTTACTCTCTTGGAGGGATGGTGGCCGAGGTGAGTAAGGATGGGAAGGAGC
AAAGCACGGGGGCGAAGCATGCAGCCGTCGTCGCCGGGATCGTCGAAGCGGCCGAGAGGTGCGGTCTGCAGCTACTCGAG
ACTGGGCCG---TCTCGTGGGATTCATCCAAGGAAAGCGGCAGCAGCAGTTTGA--------------------------
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>chr3D_1_TraesCS3D01G137000
CCATGCATTCTAGACGGTGGG------TTCCTCCTCAAGCGAGCGCGGTCTAACTCCGTGACGGTGAAGTA---------
-------------------------------ACGGTGCTCGGTCTCTTCACCCTGCCT------CAAATTACTGTAGTAA
CTTTCC-TCTTTTCTCCGCGAGAATCGATCAAGTTTCCCCGGAAGGAGCAGCTCAGTAAGTTCGCACGTTCAGACTCACC
GACTCGATCGGGAAAAAGACACATACACA----------------------TGCAGTTGACACATCCCCACGTTGAATAA
ATCAAATTCAATGCCGGTCAACTCGTGACTTTGAACGGTAATACTATGAATGAACGAATATTATTTGTGTTCATAAGGTG
GGAGTACTATTAACTTTTGGCTAATTCTCAGTCGCCTCTGA--AACTTTCTTGAAAACTTCAGTCCCTAAAATGGCGAAG
AT---------------------------AGGTAAAGGTGTGATCTGGTGAAGCATTGAGACAAC-AGCTGGGACTGAAA
TTTAGTAAGAAGGAGAAATCAGATAAATTTTGTTTTGCGAATCGCGATTAAAAAGAT-CATCAGATTACTTTT-------
----------GTGC---------TGATGCCGGTTTGAAGTATTTGCACGAGTGGCTTCATTGCCAGTTGTATTCTGACTG
GCAGGGCAATGCAGGTACGTGTCAGGTTCCGGTGATCTTGACATGGAGCCCGAGAG------AGACTCTTCTTTTTCCAA
TCCACCGAAC------------GCGAAGCAAAATAGTAGAGCAGACTAGCCAAAGTGACGAGACCATCGGAATTTTATTT
TTATTTGAAAGCTGACCATGGGAAAACTAAGCACAAAAGTACGTAGGCATGCGCGTTA-ACACAGCTAAGGTTCACGACA
GTGACGGTCTCCTTGCTTCCTTCCAAGAACCACACCGCAAAAAAAC-AAAATCTACGTGCAGGCTAGTACTAGTATAAAT
AGAGAGCCATCTCCCGCTGGTTTCATGCACCAATCCATCTCGTCGGAAATCGTAACATCTTCTCGAGCCTGCACGCAGCG
ACCAAACAGACGACACG------GCTTCTTTCTCGTGCATGCACATGGCGATGGCGGGCAGTGGCATTAGCGCGGCAGCG
AGCGGCAATGGCAAAGCCAAGGTGGTCATTGTGATGGGCGCCACGGCCACCGGCAAGTCCAAGCTGGCCGTCGACCTCGC
GCTGCGGTTCGGCGGCGAGGTCGTCAACTCGGACAAGATCCAGGTCCACGACGGCCTGGACGTGGTCACCAACAAGGCCA
CCGCCCGCGAGCAGGCCGGGGTGCCGCACCACCTGATCGGCGGGGTGCACCCCGACGCCGACTACGCCGCCGCGGACTTC
CGGCGCGACGCCACCCGCGCCGTGGAGTCAGTGCTCGCGAGGGGCCGCCTGCCGATCATCGCCGGCGGGTCCAACAGCTA
CCTCGAGGCGCTGCTGGACGGCGAGCCGGGATTCCGCCGGCGGTACGAATGTTGCTTCCTGTGGGTGGACGCCGACACGG
CGGTGCTGGAACGGTACGTCGGCGACCGCGTCGACTGCATGGTGGAGCAAGGGCTCGTCGGCGAGGTGCGGGGATTTTAT
CGGACGGACGCGGACTACTCCCGTGGGATCCGGAGGGCCATAGGCGTGCCGGAGATGGACACCTACTTCCGGATGGAGGC
CGCCGGTGCGCTGGACGGAGACGACGGACGACGGGCCGGGCTCCTCGAGGCCGCCGTCGACGAGATAAGGGAGAACACGT
GCAGGCTGGTGTGCAGTCAGCTCCGGAAGATCCACCGGCTACGATGCCTGCCGGGGTGGAGCATCCGCCGCCTTGACGTC
ACCAGGGTGCTTTCGCTCAAGGTCGGGAAGGTGAAGGACGAAGAAGCGGAGCGCACCCTGTGGGAGTCGGATGTCGTCGG
GCCTGCCGCGCGCGTCGTTGAGACGTTTCTTTACTCTCTTGGAGGGATGGTGGCCGAGGTGAGTAAGGATGGGAAGGAGC
AAAGCACGGGGGCGAAGCATGCAGCCGTCGTCGCCGGGATCGTCGAAGCGGCCGAGAGGTGCGGTCTGCAGCTACTCGAG
ACTGGGCCG---TCTCGTGGGATTCATCCAAGGAAAGCGGCAGCAGCAGTTTGAGTTTCGAGCTTCTCATCAAATTAACC
ATACTAAACTTCAAAAACAAATCAAATTA--------------------------ACCATACCATATATTTAGTAC--TA
CTATTAGCTTGTGATCTCTAATCAATTGTTTTATTTTTTATTTAATCTATATAGTTGTGTTCTTTGATCCATTGTTAATA
AGTTATAGAAAAGCCTAGTGCATTGTATGTTGCACTCTAAACTACACCCTATGTTTCGAAATCTAAGGTGTTTGGGCAGT
TTTAAACTAAAACGCCAAAACTTCCTACATTTAGGAAAGAAGGCAGTAGATGTGATACCCCACGACGTTGTTGCACAAAT
TATTTGCAATATATTTCAATGGTTGTATAATATGAACATTTAGATTAATAATATGTGAAGACTTTTCTAATACATGGTTG
AATGTTGAGAGGAATATATTAGTAGGGTCACATATTTAGATATAGGTATAGGATATGCTTAGATACATTTCATCTAGTGG
TCTGGATCTTAATATGCATTTGCCACACTGGCAACGCTTGCCGGATGCTTTTTGAACGAAGGGTCCACGGAGGAGCGACC
CAACCTATTCCATCATGACTTACGCCCCGCGAAGGACTAATCACATTAGGGTAGATCTTCACGAAGTAGGTGTTCTCTTT
TCTATGC-------------------------------------------------------------------------
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----------ATTAGAAGGTGGAGTTCTCTCTTAGAACATATGATGGGAGTGAAGTTTGCTTCAAGTTAAACTGATGGGA
CAAGTGGGGTACATATAGGGTGGACTAGATATCTG-ACATTACTCACCGTTTTGCACATCTCGGAGGCTCGCACTGCTTT
TGCTCGGTGTTTCCAAAGTGAACATAAATGACAAATTTCAGATGTTCGGAGCCTTTGAAGTGAATACCTCAACAGAGGCA
CACTCTCTGTCGGCGCTTAGGAAATTCTGATTGGAAAGGCTCAAAATTTCGGACTTGACAAGAGAAGGTTTACGAGGTTG
CTTTGGTGGCTCTGAGCGGAATGTTGGAGCCTCTGATTGAACTAGA
>chr3B_1
CCACGCATTCTAGACGGTGGGTCAATCTTCCTCCTCAAGCGAGCGCGGTCTAACTCCGTGCCGGTAACGGTAACC-----
----------------------------------GTACTCGGTCTCTTCACCCTGCCA------CAAATTACTGTAGTAA
TATTTATTCTTTTCTCCGCGAGAATCGATCAAGTTTCCCCGGAAGGAGCAGCTCAGTAAGTTCGCACGTTCAGACTCACC
GACTCGATCGGGAAACAGACGCATACACA----------------------TGCAGTTGACACATCCCCACATTGAATTA
ATCAAATTCAATGCCGGTCAACTCGTGACTTTGAACGGAAATACTATGAATGAACGAATATTACTTGTGTTCATAAGGTG
GAAGTACTATTAACTTTTGGCTAATTCTCAGTCCCTA-------------------------------AAATTTGCATAA
GACTAAACTCCCCTGAGATTACACTAGCGAGGTAAAGGTGTGAGTTGGTGAAACATTGAGACAAAGAGCTGGGACTGGAA
TTT------AAGGAGATATCAGATCAATTTTGTTTTGCGAATTGCCATAAAAAAAAT-CATCAGATTACTTTCTGAATCG
GGATGCATGAGTGC---------TGATGCCGGTTTGTAGTATTTGGAGGAGTGGCTTAATTGCCAGTTGTATTCTGACTG
GCAGCGCAATGCAGCTACATGTCCGTTTCCCGTGATCTTGACATGGAGCCTGAGAGTGAGAGAGACTGTTCTTTTCCCAA
ACCACCGAAC------------GCTAAACAAAATGGAGCGAACTA------AAGGTGACGCGACCACCGGAATTTTATGT
TTTTTTGAAAGTTGACCGTGGGACAACTAAGCAAAAGAGTACGTAGGCATGCGCGTTA-ACACAGCTAAGGTTCAAGACA
GTGACGGTCTCCTC----CCTTCCAAGAACCACACCGCAAAC-AAC-AAAATCTACGTGCAGGCTAGTA---GTATAAAT
AGAGAGCCATCTCCCGCTAGTTTCATGCACCGATCGATCTCGTCGGAAATCGTAAGTTCTTCTCGAGCCTGCACGCAGCG
ACCAAACAGACGACACG------ACTTCTTTCTCGTGCATGCACATGGCGATGGCGGGCAATGGCATTAGCGCGGCGGCG
AGCGGCAATGGCAAAGCCAAGGTGGTTATTGTGATGGGCGCCACGGCCACCGGCAAGTCCAAGCTGGCCGTCGCCCTCGC
GCTGCGGTTCGACGGCGAGGTCGTCAACTCGGACAAGATCCAGGTCCACGACGGCCTCGCCGTGGTCACCAACAAGGCCA
CCGCCCGCGAGCAAGCCGGGGTGCCGCACCACCTGATCGGCGGGGTGCACCCCGACGCCGACTACGCCGCTGCGGACTTC
CGGCGCGACGCCACGCGCGCCGTGGAGTCGATCCTCTCGAGGGGCCGCCTGCCGATCATCGCCGGCGGGTCCAACAGCTA
CCTCGAGGCGCTGCTGGACGGCGAGCCGGGATTCCGCCGGCGGTACGAATGTTGCTTCCTCTGGGTGGACGCCGACACGT
CGGTGCTGGAACGGTACGTCGGCGACCGCGTCGACTGCATGGTGGAGCAAGGGCTCGTCGGCGAGGTGCGGGAGTTTTTC
CGGACGGACGCGGGCTACTCCCGTGGGATCAGGAGGGCCATAGGCGTGCCGGAGATGGACACCTACTTCCGGATGGAGGC
CGCCGGTGCGCTGGACGGAGACGACGAACTACGGGCCGGGCTCCTCGAGGCCGCTGTCGAACAGATCAAGGAGAACACAT
GCAGGCTGGTGTGCAGTCAGCTCCGGAAGATCCACCGGCTACGATGCCTGCCTGGGTGGAGCATCCGCCGCCTTGATGTC
ACCAGGGTGCTTTCGCTCAAGGTCGGGAAGGCCAAGGACGAGGAAGCGGAGCGCACCCTGTGGGAGTCGGATGTCGTCGG
GCCTGCCGCGCGCGTCGTTGAGACGTTTCTTCACTCTCTTGGAGGGATGGTGGCCGAGGTGAGTAGGGATGGGAAGGAGC
AAAGCACGGTGGCGAAGCATGCAGCCGTCGTCGCCGGGATCGTCGAAGCGGCCGAGAGGTGCGGTCTGCAGCTACTCGAG
ACTGGGCCG---TCCCGTGGGATCCATCCAAGGAAAGCGGCATCAGCAGTTTGAGTTTGGAGCTTCTCATCAAATTAACC
ATACAAAACTTCAAAAACAAATCAAATTAACCATACCACATTCTTTTTTAGGGAAACCATACCACATATTTGGTAC--TA
CTATTAGCTTGCGATCTCTAATCAATTGTTTTATTTTTTATTTAATCTATACAGTTGTGTTCTTTGATCCATTATTAATA
AGTTAAAGAAAAGCCTAGTGCATTGTATATTGCACTCTAAACTACACCCTCTGTTTTTAAATATAAGGTGTTTTGGCAGT
T-TAAACTAAAACGCCAAAACGTCCTACATTTAAGAAAGGAGATAGTAGATGTGATACCCCACGACGTTGATGTACAAAT
TATTTGCAATATATTTCAATGGTTGTATAATATGAACATTTGGATTAATAATATGCGAAGACTTTTCTAATGCATGGTTG
AATGTTGAGAGGAATATATTAGTAGGACCATCTATTTAGATATAGGTATAGGATATGCTTAGATACATATCATCTAGTGG
TTTGGATCTTAATATGCATTTGCCACACTGGTAGT--------GATGCTTTTTGGACGAAGGGTCCACGGAGGAGCAATC
CAACCTATTCCATCATGACTTACGTCCGT-GAAGGACTAGTCTCATTAGGGTAGATCTTCACAAAGTAGGTGATCTCCGA
ACCCATATAGACGTTTTGCCTTCTTCACAAACTTGAAGACCTCCAAGCACACCCTTCAAAAGTAACAAGATGGATGTTGC
TTAGGTAATGAATCCCTTGCTCTTGTGCTTCAAAAGATAATCTTCTCAGCAGTTAAACTTCCTCAAGATTTTGACTGTCT
ATTGGGAGATGTTGGACTGAAAAGCAAGAGGGGATTAAATCTCAAGTGGTTTGATTGGATGGTTGGACTACAAAGCCTTT
TGAAATCAGTATTAGAAGGTGGAGTTCTCTCTTGGAACATATGATGGGAGTGAATTTTGCTTCGAGTTAGACTAGTGGGA
TAAGTGGGGTATATATAGGGTGGACTAGATATCTGAACATTACTCACCGTTTTGCACATCTCGGAGGTTCGCACTAGTTT
TGCTCGGTGTTTCCAAAGTGAACATAAATGACAATTTTCAGATGTTCAGAGCCTCTGAAGTGAGTACCTCGGCAGTGCCA
CACTCTCTGTCGGCACTTAGGAAATTCCGACATGAAAGGCTCAAAATTTCGGATCTGACAACAAAAGGTTTATGAGGTTG
CTTCGGTGGCTCCGAGTGGAATGTTGGAGGCTCTGATTGAACTAGA
>chr3A_1
CCATGCATTCTAGACGGTGGGTCAATCTTCCTC---AAGCGAGCGCGGTCTAACTCCGTGACGGTGACGGTAAAAGCACG
GTGCTCGGTCTCTTTTTTTTTTTTGAGCATCACGGTGCTCGGTCTCTTCACCCCCTGCAACGTGCAAATTACTGCGGTGT
CTTTCC-TCTTTTCTCCGCGAGAATCGATCGAGTTTCCCTGGAAGAAGCAGTTCGGG--------ACGTTCAGACCCACC
GACTCGATCGGGAAACAAACACGTACGTACACCGCGAGTAACTTCACATAGTGCAGTTGACACATCCCCGCATTGAATAA
ATCAAATTCAATACCGGTCAACTCGTGACTTTGACCAGTACTAATGTTTTTGAACGAATATTATCTGTGTTCATAACGTG
GAGGCACTGTTAACCTTTGGCTCATTCTCAGTCTCGCCCCGGTAACTTTTTTGAAAACTTCAGGTCCTAAAATTGCGTAA
GGATAATAAA-CCTAAGATTACACCGGCGAGGTAGTAATAAGGTAAATGC--------------------GTGACTCAAA
TTTAAGAAGAAGAA-AAATCAGATAGCTTTTGTTTTGCGAATTGTGATTAAAAAAAACCATCAGATAACTTTGTGAATCA
GCATTCATGAGTATATATAGTAGTGATGCCGGTT----GTATTTGCAGGAGTAGCTTAATTGCCAGTTGTGTTCTGACTG
GCAGGGCAATGCAGGTACGTGTCAGGTTCCTGTGATCTTGACATGGAACCC------GAGAGAGACCGTTCCTTTTCCAA
TCCACCGATGAAACGAAGAAATGCTAAACAAAATGCAGCAAGCTTGCC-----AGTGACGAGACCATCGGAATTTTAGTT
TTTTTTTAAAGTTGACCGTGGG--------------GAGAACGTAAGCATGCGCGTTGGACACAGCTAAGGTTCAGGACA
GTGACGGTCTCCTC----CCTTCCTAGAACCACACCGTCAAGAACCAAAATTCTACGTGCAGGCTAGTA------TAAAT
AGACGGCCATCTCCCGCTAGTTTCATGCACCGATCGACCTCCTCGAAAATCGTAGGCTCTTCTCGAGC------GCAGCA
GGCGAACAGACGCGACGACCTGTACTTCTGACTTGTGCATGCATATGAGGGC------------CATTAGCGCGGCAGCG
AGCGGCAATGGCAAAGCCAAGGTGGTCATTGTGATGGGCGCCACGGCCACCGGCAAGTCCAAGCTGGCCGTGGACCTCGC
GCTGCGGTTCGGCGGCGAGGTCGTCAACTCGGACAAGATCCAGGTCCACGACGGCCTGCCCGTGGTCACCAACAAGGCCA
CCGTCCGCGAGCAAGCCGGGGTGCCGCACCACATGATCGGCGGGGTGCACCCCAACGCCGACTACGCCGCGGCGGAGTTT
CGGCGCGACGCCACGCGCGCCGTGGAGTCGGTCCTCGCGAGGGGCCGCCTGCCCATCATCGCCGGCGGGTCCAACAGCTA
CCTCGAGGCGCTGCTGGACGGCGAGCCGGGGTTCCGCCGGCGGTACGACTGCTGCTTCCTCTGGGTGGACGCCGACACGT
CGGTGCTGGAGCGGTACGTCGGCGACCGCGTCGACTGCATGGTGGAGCAAGGGCTCGTCGGCGAGGTGCGGGAGTTTTAC
CGGGCGGACGCGGACTACTCCCGTGGGATCAGGAGGGCCATTGGCGTGCCGGAGATGGACACCTACTTCCGGCAGGAGGC
GGCAGGGGCGCTGGAGGGAGACGAGGAACGACGGGCCGGGCTCCTTGAGGCCGCCGTCGGCGAGATCAAGGAGAACACAT
GCAGGCTGGTGTGCAGTCAGCTCCGGAAGGTCCACCGCCTGCGATGCCTGCCTGGGTGGAGCATCCGCCGCCTCGATGTC
ACCAGGGTGCTTTCGCTCAAGGTCGGGAAGGCGACGGACCAAGAGGCGGAGCGCACCCTGTGGGAGGCGGATGTCGTCGG
GCCTGCCGCGTGCGTCGTTGACATGTTTATTCGCTCTCCTGGAGGGATGGTGGCGGATGTGAGCACGGATGGGAAGGAGC
TAAGCACGGGGGCCAAGCATGCAGC---CGTCGCCGGAATCGTCGAAGCGGCCGACAGGTGTGGTCTGCAGCTACTCGAG
ACTGGGCCGACGTCTCGTGGGTTTCATCCAAGGAAAGCGGCCGCAGCAGTTTGAGTTTCGAGACTCTCATCAACTTAACC
GTACCACCCCT---AAAAAAATCAACTTA--------------------------ACCATACCATATATCCATTTATTTA
GTATCAGCTTGTGATCTATAATCATT-------TTATTGATTTATTTTATCTAGTTGTGCTCTTCTATCCATT------A
AGTTATAGAAAAGCCTAATGCATTGTATACTGCACACTA-----------------------------------------
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>SNPs
-------------------------------------------------------------------S-SS---------
---------------------------------------------------------S----------------------
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---------------S-------------------------------------------------------S--------
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-S-------------------------------S-SS-SSS--------S-------------SS--------S---S-S
SS------------------------------------------S-------S-----------S---------------
----SS------------------------------------S-----------S-----------------S-------
------------------------------------S----------S---------S----------------------
------------------------------S------------------------------------S------------
------------------------S--S------S-SSS-SSSS-SSSSSS-----------------------------
--S--------S-----S-----S---------S--S--------------------------------------S----
-------------SSSSS-----------------------S---------------------------SSS--------
------------------S------------S---S-------------------SS-----------------------
-----------------------S------------------------------------S-------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
-------------S--------------------------------------------------------S---------
--------------S--------------S--S-----------------------------------------------
------------------------------------------------------------S------------------S
------------------------------------------------------------------------SS-----S
------------------------------S-------------------------------------------------
--------------------------S---------------------------------------S-S---------S-
----------------------------------------------------S-----------------------S---
-------------------------------S------------------------------------------------
-------------------------------S---------------------------------S--------------
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----S---------------------------------------------------------------------------
-------------------------------------------------------------------------S------
----------------------------S---------------------S-----SS----S----------S------
-S-------------------S-----------S-----S--SS--------------------------S--S------
-----------------------------------------S-------------S---------------S--------
--------------------------SS--SS------------------------------------S-----------
-S-----------------------------S-SSSSSSSSSS-----------S---------------------S-S-
------------------------S--SSS---------S--S-------------------S---------S----SSS
S-SSSSS-------------------------------------------------------------------------
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---------------------------------S--------------------S--------S-----S---SS-----
S----------S-------------------------------------------------------S-------SS---
----------------------------------S------------S------S--------S------SS---S-S--
--------------S------------S--SSS--------------------SS------S-S--------S-------
---S--------S---S------------S----------------
>forward_978
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------------------------------------------------------------------------------CA
GTGACGGTCTCCTTGCTT--------------------------------------------------------------
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>reverse_2066
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-----------------------------------------------------------------AGGATGGGAAGGAGC
AAAGC---------------------------------------------------------------------------
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>forward_1002
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----------------------CCAAGAACCACACCGCAAAA--------------------------------------
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>reverse_2760
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---------------------------------------GCCGGATGCTTTTTGAACGA---------------------
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