>input_sequence_62115
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--------ATGGACGGCGACCTGACGGAGGGGCTCCTCTGCAAGAACTCCGGCAAGCGCCCGGAGTCCCCCCCTCCGCTG
TCGCCGTCTTCGGGGGACATTTTCAAGGACCCTACCGACTCCAGCGACTCCAGCACCAGCGGGGCCGCGACGAACCGGGC
GCCCGTCCGCGACGACTGCAAGAACCACCAAGAAGTGGTGGTGGCGTCCTCTGCGGCCAGCGAAGGCGAGCACGGGACGG
TATCTACCGGCGAGGAAGAGGATAAGGAGGCGTCGGGACCCCTTGCTCGCTGGGAAGCCCT---GGCGGCATCCGCTGCT
CTCCGGGAGGCGGCGGCGGCGGCGGCGGCATCTCGCCGGGAGGCGGGGAGGGGCTTCTTTTTCGGCGGGGGGAGAGCAGG
AGGTGGCTCGAGCGGCGGGGCCGTTTCGAGCAGGGCTGAGCACCTGATCCTCGTCCCTCCGCCGGGAGCGGCGGGTCTGA
TCCACCGCGCCGATCACCTGTCCGACTCCTGGAGGACGGACCCCATCCTCGCCGGCCCTTCGACCGACCTGACGGTCGCG
CTGCAGGCGTTCGCCGCCGCACCAGATGAGAGAACAGCGGCCAGGCTCGAGCAGGCGGCTGCGGCGTTGGACATTGTTGC
ATCAAGCAACACGGAGGATGGTGCTGTCGCCAAGCAGCTGGCCGCCGAAGCGGCGGCACTTGCGGCCGGCTGGCGGGGAG
ACGACCGGCAGCGGCAGGGGTCGAGCGCCTTCGAAACGGCGGCCGGTCGGCGGGAACCGGAGCTGCAGGCGCCAGCGTCC
T---ATTCCACTGAAACTTTGTTGTGCGCCGTGATCTCTGGCTCATTGGCCCTGCTTCCATATTTGCCCACCCAAGTCCC
CAAGCGTTCCCGGAGTGTCTTTGCCGTTCTCTTTGGCAGCGTCTTCGTACTCGCTTCAGTCGGTGTGATGCTCCTCGTCG
CACACAAGAGGTTTGCCAACACTC------TGGCGAGAATCTCTTTTGGAACATTTACAGTGTTGGTTATCGCCTTTGTT
GGGTTCGCCCTCGGAGGAAGGACATACAGTTGA-----------------------------------------------
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>chr3B_1_TraesCS3B01G431400
GGCGAGGTTGTAGCAAGCAGCTAAGCAGGTTTTCTCGCTCGGCGTTGTTCACTCAGTCGCTCGCTCGTTCTATGGATTGT
TTTTCTCTTTCTTGTAAAATGGTTGCACTAGTACGGGTTTTTTCTTTCAAATTTTCTTCTTTCTTTCTTGGGTTCCTGCT
GTTTTTTCACCGGTTTTCTTTTCTCTCATTGTTATAAATTTGGTTTTCCTTTTTATTGGTTTTCTTTTGTTTTTCTTTCT
TTCTTTGTTATACTTTGGTTTCCTTTGTTTTCTTTCTTTGTTTTCTTTGCCTTTTCCTTTTTGTTTCTTTGTTTCTTTGT
CGATTTTCATTGGTTTTCTTTTCTGTTCAACATATGTTAACTTTTTAGTACATACCCCCTCCATTCGGTATTACTTATCG
AAGAAACTAATGTATCTAGACGTATT------------------------ATCCATTTCTGGGACAAGCAATTCCGGATG
GAGAGAGTATTCAACACTTTTCATATACATTAGAATCATTTTT-ATACAAATGCTAAATATTTCTGAAATAAATGATTTT
TAAAACTTAGTTTTTTATGTTTACTTTTTTTATACACATTGTAAATTTTGGTATATATGTAATATATTTTTATAATACAT
TCTTAACTTT----------------------TTTTTTGAGAATCAACATTTTTTGTGTACATGGTCAATTTTAACATTT
TGTGTACATTTTTTTTGGGAGGTAACATTTTGTGTACATGGTTAATATCGCATCCCGCGCGGCTGGGTCGGCCCATGTCG
CGATAGCAGCGCCCTTCTCTTTCTCTTTCTCCTCTCAAAGAAAAAGCAGCGCCCTTCTCTGAAGTAAAATCCCGCTCCCA
AACAAAAGAAATTCCCCTCCACCTGTTCGTCCACCTCGAGCCGCCGTCCCCCTCCCCTCCAC-GAAAAACGAAGTTCCCC
GTCGGATAGTTGCTCTCCCGGCGCCCGGCGGCCGGGCCTGCCCCCAAATCGAAGTCCGGCTGCCCGCTGCTTCATCCTCT
TGGAGAGGATGGACGGCGACCTGACGGAGGGGCTCCTCTGCAAGAACTCCGGCAAGCGCCCGGAGTCCCCCCCTCCGCTG
TCGCCGTCTTCGGGGGACATTTTCAAGGACCCTACCGACTCCAGCGACTCCAGCACCAGCGGGGCCGCGACGAACCGGGC
GCCCGTCCGCGACGACTGCAAGAACCACCAAGAAGTGGTGGTGGCGTCCTCTGCGGCCAGCGAAGGCGAGCACGGGACGG
TATCTACCGGCGAGGAAGAGGATAAGGAGGCGTCGGGACCCCTTGCTCGCTGGGAAGCCCT---GGCGGCATCCGCTGCT
CTCCGGGAGGCGGCGGCGGCGGCGGCGGCATCTCGCCGGGAGGCGGGGAGGGGCTTCTTTTTCGGCGGGGGGAGAGCAGG
AGGTGGCTCGAGCGGCGGGGCCGTTTCGAGCAGGGCTGAGCACCTGATCCTCGTCCCTCCGCCGGGAGCGGCGGGTCTGA
TCCACCGCGCCGATCACCTGTCCGACTCCTGGAGGACGGACCCCATCCTCGCCGGCCCTTCGACCGACCTGACGGTCGCG
CTGCAGGCGTTCGCCGCCGCACCAGATGAGAGAACAGCGGCCAGGCTCGAGCAGGCGGCTGCGGCGTTGGACATTGTTGC
ATCAAGCAACACGGAGGATGGTGCTGTCGCCAAGCAGCTGGCCGCCGAAGCGGCGGCACTTGCGGCCGGCTGGCGGGGAG
ACGACCGGCAGCGGCAGGGGTCGAGCGCCTTCGAAACGGCGGCCGGTCGGCGGGAACCGGAGCTGCAGGCGCCAGCGTCC
T---ATTCCACTGAAACTTTGTTGTGCGCCGTGATCTCTGGCTCATTGGCCCTGCTTCCATATTTGCCCACCCAAGTCCC
CAAGCGTTCCCGGAGTGTCTTTGCCGTTCTCTTTGGCAGCGTCTTCGTACTCGCTTCAGTCGGTGTGATGCTCCTCGTCG
CACACAAGAGGTTTGCCAACACTC------TGGCGAGAATCTCTTTTGGAACATTTACAGTGTTGGTTATCGCCTTTGTT
GGGTTCGCCCTCGGAGGAAGGACATACAGTTGATATTGATAGGGAGTACTATGTAGTACTCCCTCCGTTCCCAAATACTT
GTCTTTCTAGTCATTTCAAATGGACTCAACATACGGATGTATGTAGACATATTTTAAAGTATAGATTCACTCATTTTGGG
CCGTATGTAGTCACTTGTTGAAATCTCTAGAAAGACAAGTATTTAGGAACGGAGGGAGTACGTATCATAGATAGATACTG
GTCACTCTGAATTTGAAGTACCATGCCAGACTTTTGAGAAATGCCATATCACAGATATTGGCGTGTA-------------
---TGACAAGTTTTGAGGAATGTCATATCATAGTTTTGTTTTCCGGCAGTAATATCAAGTTGGAGGAGTCTG-TTATTCT
GTATTGCGTGTTCACAAAATTCTTGCCTTCTTGATCTTAACTTCAGTTAAGCATCGAAGGTGTTTGCTTCTCTCCATTTT
TTGTTGGGAGATTCTGGTGTAAAGCTACTTTGGTTTCGTT----------------------------------------
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-------------------------------------------ATGAATGGAGCTGGGAGTGTCGG-------CATGCCA
ACAACGGATGATGTTAAAACGGTGTTTTACCTTGGAATTTGACAAATTGGTTTTCCTTTCAT----------TTTGCTTT
GTTGACCTACGGTTACCTCGAGCCTGGAGCAATAAGTTTAACCCATACAAGTTATTTATTTCTTATATTATAGTCCCAAC
GCCGAGGTTCCATTGTTTGTGTGTGGTTCATCTTACATTTTAGTTTGAACTAAAACACGACGAGTAATTTGAAACGGAGG
GGTTAGCTTTTTATTTACATTCAATCTACAGATATGGAAAATCTAAAGTAAAAATTTT----------------------
----------------------------------------------------------TGTACCTGGCTTGCAGAAATTT
CATTCAGCTGCAGATAATAACTCCTGATCCTGGGATAACAATGACACATTACATTATAGTATTATTTAGAAGAACTCCTT
AGTAAGATCTGTGAAGTTCTTTCTATGAATATTTTTCCCGAAAATCACGCAAATCGCCAAAAATATTCTGGTGGTGCATT
GGTGTACTCCAAATAGAAAATGTAACGGGT
>chr3D_308
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-------------------------------------------------------------------TTTGTTTCTTTGT
CGATTTTCATTGGTTTTCTTTTCTGTTCAACATATGTTAACTTTTTAGAACATACTCCCTTCATCCGAAATTATTTGTCG
AAGAAATTAATGTATCTAGACATATTTTAGTTCTAGATACATTCATTTTTATCTATTTATGCGAGAAGTAATTCCGGACG
GAGGGAATATTCAACATTTTTCATATACATTAGAATTATTTTTTATATAAATGCTAATTTTTTCTGAAATAAATGTTTGT
TTAAAACTATATTGTTAGTTCTATATTTTTCATACACATGGCACATTTTGGTATATATGTAATATATTTTTATAATACAT
TCTTAAAAAATTTAATACAACATTAACATTTATTTTTGGAGAATCAACATTTTTTGTGTACATGGTCAATAT--------
----------------------TAACATTTTGTGTACATGGTCAATATCGCATCCCACGCGCCTGGGTCGGCCCATGTCG
CGATAGCAGCGCCCTTCTCTTTCTCTCCCT-CTCTCAAAGAAAAAGCAGCGCCCTTCTCTGAAGGAAAATCCCGCTCCCA
AACAAAAGAAATTCCCCTCCCCCTGTTCGTCCACCTCGAGCCACCGTTCCCCTCCCCTCCACGGAAAAACGAAGCTCCCC
GTCGGATAGTTGCTCTCCCGGCGGCCGGGT-------CTGCCCCCAAATCGAAGTCCGGCTGACCGCTGCTTCATCCTCT
TGGAGAGGATGGACGGCGACCTGACGGAGGGGCTCCTCCGCAAGAGCTCCGGCAAGCGCCCGGAGTCTCCCCCTCCGCTA
TCGCCGTCTTCGCTGGACATTTTCGAGGACCCTACCGACTCCCGCGACTCCAGCACCAGCGGGGCCGCGACGAACCGGGC
GCCCCTCCGCGACGAGTGCAAGAACCACCAAGAAGTGGTGGCGTCATCCTCTGAGGCCAGCGAAGGCGAGCAAGGGACGG
TATCTACCGGCGAGGAAGAGGATAAGGAGGCGGCGGCACTCCTTGCTCGCTGGGAAGCGGTGGCGGCGGCATCCGCTGCT
CGCTTGGCGGCGGCGGCGGCGGCATCTGCTGCTCGCCGGGAGGCGAGGAGGGGCTTCTTTTTCGGCGGGGGGAGCGCGGG
AGGTGGCTCGAGCGGCAGGGCCG---------------AGCACCTGATCCGCATCCCTCCGCCGGGAGCGGCGGGCCTGA
TCCACCGCGCTGAACACCTGTCCAACTCCTGGAGGACGGACCCTATCCTCGCCGGCCCTTCGACGGATCTGACGGTCGCG
CTGCGGGCGTTCGCCGCCGCACCAGATGCGACAACAGCGGCCAGACTCGAGCGGGCGGCTGCGGCGTTGGACAGTGTTGC
ATCAAGCAACACGGAGGATGGTGCTGTCGCCAAGCAGCTGGCCAACGAAGCGGCGGCACTGGCGGCCGGCTGGCGGGGAG
ACGGCCCGACGGGGCAGGGGTCGAGCGCCTTCGAAACGGCGGCCGGTCAGCGGGGACCCG------AGGCGCCAGCAGCT
TCCCATTCCACTGAATTCTTGCTGTGCGCTGCTATCTCGGGCTCACTGGCCCTTCTCCCCTATTTGCCTACGCAAGTCCC
CAAGAAGTCCAGGCGCGTCTTCGCCGTTCTATTTGGCATCGCGTTCTTCCTCGCGTCAGTAGGTGCGATGCTCCTCGCCG
CACCAGTCCCCAAGAAGACGGCCAACATCATGGCAAGAGTTTCTTTTGCAACATTCACAGTTTTGGTTGTGGCCTTTGTT
GGGTTTGCTCTAGGAGGAGGTACATATAGTTGATAGGTATGTAGTGTCTTAGATACCGGTGT------------------
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---ACTGTGAATTTGAAGTATGCC----GACTTTTGAGAAATGTCATATCATGGATTATTGGTGTGCTGTGAATTTGATG
GAGTGACAAGTTTTAGAAATGTTGCATCATAA------TTTTCCTGCAGTAGTATCAAGTTGGAGGAGGCCTTTTATTCT
GCATTACATGTTCAGAAAATTCTTACCTTCTTGAAGTTAACTTCAGTTAAGCATGGGAGGTGTTTGCTCCTCTCCATGTT
TTGTTGGAAGATTCTGGTGTAAAACTACTTTGAAACTGCAGAAATGATTTGGCTTTTAACAGAATAACTACTATTCATTT
TTTGCAGGTTGTATTCCGTGCTATGGCGTTGATCCGTATGTGGTCCCTACTCACTCCGACGGAGGCCAGGGAGCGTTTGG
TTACTGGATCTGTCCGGTGGGAGATGGTAGCGCGGGATATATTCAACCGGTTTGGATGGCGGCCATGTAATAGGATAGAC
AATTAGTTTCCATACCTATTTTTCTGCCAGCCGGTTGTGGCTTTATGGCCTTTTTTGTTTTGTTTTCGTGTCGAGGTCTA
TGTGAGCTCGACGTAGTTTTCTTTTACGACTATTCGACATTGTTGAACCTATTTTATTTATCTAAGTGGCCGTATGCATC
CACCTAATGCAGAGGCCGGGGAATCCCCCCTTTTCCAAAAAAAATGAATGGAGCCGGGGCGTGAGAGTGTCCCCAAGCCA
ACAAAGAATGATGTTAAAAGGATGTTTTAT-TTGGAATTTAACAAATTGGTGAGTCAAACTCGTTCCTTTCATTTGCTTT
GTTGACCTACGGTTAGCTCATATCTCCATCTCTATCTGG-------ACAAGTTATTTATTTCTTATACTATAGTCCCAAT
CT-GAGGTTCCATTGTTTGC----GGTTCATCTTACACTTTA--------------------------------------
----------------ACATTCAATCTACAGATAAGGAAAATATAAGTTTTTTGTGTGCTATTAAGACGGCTGAATCCGA
TACTGGAAGAACCGAGGTCTTCAGCTGCTCTGCTAGCAAAATCCAGAGTAAAAAAAAATGTACCTGGCTTGCAGAAATTT
CATTCAGCTGCAGATGATGAC-CCTGTTCCTGGTATAACAAGGACAAATTACATTATA---TTATTAAGAAGGCCTCCTT
AGGAAGA-------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
------------------------------------------------S------S----S---S--SS----S--S---
------S--------------S-------------------------------S----S--S--S---S---------S-
---S--S---------S-------------------S----------S---------S-S---------------S--S-
-S---SS--SS--S---SS-S--SS-----S--------S-S-S------------------------------------
------SSSS---------------------------S--------------------------------S-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS--------------------S-------------S----S------------------
--------------------------SS--S---------------------------------S---------------
--------------------S---------------------S----S--------------------------S-----
-----------------------S----SSSSSSSSS-------------------------S-----------------
--------------------------------------S------S---------------------S-----------S
------------SS----------S-----------------S-------------------------------------
----S----------S-------------------------S-S-S-------S------------------S-------
--------------------------------S---S--S------------------SS--------------------
-S-SS--S---------------SS-S--SS--------------S----------------------------S--S--
----------------S------SSSSSSSSSSSSSSS------------S-S----------------------S----
----------S--S---------S-------------------S--------------------S--S------------
----S-----------------------S--S------------S-------S--------------------S------
-------------------------------------------SS---------------S-------------------
---S--S-SS-S------------------------------------S-----S---S-SSSSSS----------SS-S
---------------SSS---S-------S-SS-----S------S-------S--S--S--------S--S--------
----SSS---S--S-S-----S--------S-------S--SS---S-S-----S-----S----S-----------S--
---SSSSSSSSSSSSSS-SSS-SS----------S---S-S-------S------S-----S------S-S---------
-----S--S--S------S-S-----S--------SSS--SSS-S--SS--SS--SSSS-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS---S-------------SSSSSSSS---------------S-------SS---SS-S-SSSSSS-------------
--------------SSSS-SSS-SSSSSSSS-SSSSSS------S------S----------------S-SS--------
-S---S-S------S---------S---------SS------------------S-S-----------S--------S--
-------S---------------S--------SSSSS-SS----------------------------------------
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------------------------------------------------------S---SSSSSS-S---------S----
----S-S------------S-S-------SS---------S----------SSSS-SSS-SS------------------
---------------S---SSSS--SS-S-SS--SS-SSSSSSSSS---------------------S-----------S
SSS----------------SSSSS-------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS------------------S-------S---SS-SSSSS-S-S----------------------
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---------------S--S--S----S------S-------S----S-----------SSS-----S-----SS------
--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_73
-----------------------------------------------------CAGTCGCTCGCTCGTTCTAT-------
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>reverse_1975
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------------------------------------------------------TTCAGTCGGTGTGATGCTCC------
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>forward_74
------------------------------------------------------AGTCGCTCGCTCGTTCTATG------
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>reverse_2008
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-------GAGGTTTGCCAACACTCTGG-----------------------------------------------------
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>forward_77
---------------------------------------------------------CGCTCGCTCGTTCTATGGAT---
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>reverse_2136
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-------------------------------------------------------GTACTCCCTCCGTTCCCAAA-----
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