>input_sequence_62102
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----------------------------------------------------------ATGTCGGGAATATCGCTGGCGG
TGGCGCCGCGGTCTGACCCGGACAACGGGGCGGAGCGGCAGCCGTCGTCGGCGATGCTCGGGGGCGTCATGGGCTCGCTC
CGCGTCATCGAGCTCCAGCTCGTCGCCTTCATCATGGTCTTCTCGATGTCAGGCCTCGTCCCGCTCATCGACCTCGCCTT
CCCGGTCGTCACCACCCTCTACCTCCTCGCCCTCTCCCGCCTCGCCTTCCCTTCGCTCCACAGCAAGCTCGACGACGAAG
CCGCCGCCGCCCACTCCGCCGCGTCCCAGGAGATCTTCCGCGGAAGCAAGTAAGTTCTCATCGCTAACCCGCGCTCCTCA
GAGAAGATTAAC------------TTGATTAGCACCTGGGGATTGTTCTTGTAT--ATATTTGGATGCACTGTTCTGGAT
GATTAATTGTGCGCGCGCGCGCAAGCAGGCTGTTTCAGGTGTATGTGGTGATGGGCACCACGGTGGGGCTGTTCCTGCCG
CTGGCGCACGTCCTGGGCGGGTTCGCGCGCGGCGACGACGCCGCCGTGCGCTCCGCGACGCCACACCTGTTCCTGCTCTC
GTGCCAGATCCTCACGGAGAACATCGTGGGCTCGCTCGGCGTCTTCTCGCCGCCGCTGAGGGCACTGGTGCCGCTTCTCT
ACACGGTGCGCCGCGTCTTCGTCATCGTCGACTGGGTCTACGAAGTGTGGACCAACAAGCTCATCACCCGCACCGCCCCC
GTTCAGGTGCGTTGATGTCACGATTTCCAGTTTCAGATATGAATCCTTTCCCATCGTGTGTCTGAACAT-CGCGTTCCGC
GGCGTGATGCAGGATAAGGCCTGGGTGTGGTTCGGCAGGTACCTCGCGGTGGCGAACTTGGTCTACTTCTCCACCAACCT
GTTCGTCTTCCTCATACCCAAGTTTCTCCCCCGCGCGTTCGAGAAGTACTTCCACACGCGCGACGAGGTGTACGCCAAGA
CGGCGGAGGACAAGCGAGCAAGGGATCTGTCCTCGCTCGATGATGACGGTGCGGCAAAATCGGAGGTCTCCAAGAAGGCC
GACTGA--------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G283000
CTTCAAAATTTGTCCATAAAAGGATGTATTTCTATGTTCTATCTTCTCAATGTACTTTAAAGTAGAAAAAATGTTTCTCT
CTCACCATATGGTAATCAAGACCAATAACACTCTATGCATGGTCTTCTTAATTTTTATATGCACTTAGTTCATTGGGGAT
TGGGTAATTAAAGAGAGAGATGGTGGCTTGTATCTTTCAAATGCATTTTTTACTTCATTTCATAATTTGTCTTAAAATTT
CTATATGTACATTTTTCACCAGACGAAAGGAGTATAAATAAGTATGGGTGCTTAGACAAGAAATGATTTTTTAAGCACCC
CTCTCAGCATCGATAATTGAAGTGGCTCGTCTTTCAATCTATTTTGGATGGAGTTCGCAAAAGAATAAAC-ATAAAGTAC
ATTCAAGGATGAGTTATTTTTTTAAGCAGACCCAAACCTCGGTGGAGCCGATAATTTTGTTTATCTTGGATTACATGTTT
TTAGA--AAATTATTGTTCCACGATTTTATGATCTATCTATAAAAATAACAAAAGAAATCCCTTTGAAAATATCCATGAT
TTTTACATAATCTTCTGCTAGAAGCCTTACAAGGACCTTATCAGGCAATCTCATCCTGGAGCCTCGACGCTGTTCCTCTC
TTTCCTTTCTTC-CCGATGGAACCATCCAGGCGCGAGCATGGACGACAGATGTGCCCGAACTAGACGGCGTCGCATAGAA
AAATGAAAATGCGTTACCCCAAAAGTGCCACGCAGCCAGCCCTCGTGTCCTCGGCCCTGTACGTGCCCCGCCGCGAGCCC
GGACACGTATCCCATCTGACCGGCGCCAGCGAACAAACAAATACTCCCACTCCCTCTTGCCCAGTTCCTGCTACT-----
-----CCTTCCTCTGCTTTCCTCTCGTAAATTATAGTCCCGCGGTGCTGCTCTGTTCATTTCTCCGGCGATCGGCGATCA
GTTGTGCACCTGCCGTAGCTGTTGATTGATAGGGGGCTGATTGAGGTAGC----TGCCATGTCGGGAATATCGCTGGCGG
TGGCGCCGCGGTCTGACCCGGACAACGGGGCGGAGCGGCAGCCGTCGTCGGCGATGCTCGGGGGCGTCATGGGCTCGCTC
CGCGTCATCGAGCTCCAGCTCGTCGCCTTCATCATGGTCTTCTCGATGTCAGGCCTCGTCCCGCTCATCGACCTCGCCTT
CCCGGTCGTCACCACCCTCTACCTCCTCGCCCTCTCCCGCCTCGCCTTCCCTTCGCTCCACAGCAAGCTCGACGACGAAG
CCGCCGCCGCCCACTCCGCCGCGTCCCAGGAGATCTTCCGCGGAAGCAAGTAAGTTCTCATCGCTAACCCGCGCTCCTCA
GAGAAGATTAAC------------TTGATTAGCACCTGGGGATTGTTCTTGTAT--ATATTTGGATGCACTGTTCTGGAT
GATTAATTGTGCGCGCGCGCGCAAGCAGGCTGTTTCAGGTGTATGTGGTGATGGGCACCACGGTGGGGCTGTTCCTGCCG
CTGGCGCACGTCCTGGGCGGGTTCGCGCGCGGCGACGACGCCGCCGTGCGCTCCGCGACGCCACACCTGTTCCTGCTCTC
GTGCCAGATCCTCACGGAGAACATCGTGGGCTCGCTCGGCGTCTTCTCGCCGCCGCTGAGGGCACTGGTGCCGCTTCTCT
ACACGGTGCGCCGCGTCTTCGTCATCGTCGACTGGGTCTACGAAGTGTGGACCAACAAGCTCATCACCCGCACCGCCCCC
GTTCAGGTGCGTTGATGTCACGATTTCCAGTTTCAGATATGAATCCTTTCCCATCGTGTGTCTGAACAT-CGCGTTCCGC
GGCGTGATGCAGGATAAGGCCTGGGTGTGGTTCGGCAGGTACCTCGCGGTGGCGAACTTGGTCTACTTCTCCACCAACCT
GTTCGTCTTCCTCATACCCAAGTTTCTCCCCCGCGCGTTCGAGAAGTACTTCCACACGCGCGACGAGGTGTACGCCAAGA
CGGCGGAGGACAAGCGAGCAAGGGATCTGTCCTCGCTCGATGATGACGGTGCGGCAAAATCGGAGGTCTCCAAGAAGGCC
GACTGAGATCGATGATCGTGTTCGTTGCGCG--------GCTGCGCTCGTAGTGTGCTCTGTAGCTTCAACGTTGCTTAC
CTGTATGTGGACCGGTGTTTGTACATTTGGGTCTTCGCTTCTCATTTCTGAAATTCCGTGTGAATGTAG-----------
----TACTCCCTTC-GTTTCAACATAATTGAAGTTCTAGATTTATTTTAAGTAACTTTTAAAAGTTTGACCAGCTCAAAA
AATGTGTCAAGATCTACAACACAAAATACATAGT--ATGAAAATATATACAGAATCTCAAAAGAGTAACTTCATGTTCTA
GATGTTAGACTTGGTCAAACTTGAACGAGTTTAAACAAATTTGATTTTGAACTCACAAGTCGGGGAATAAAAAAAGTTTG
ACACCCGCGTCTGTTAAATAATTAGGCATTTTCCGGTTGAAAAAACATGATAGTGAAGATTCTTTTTTGGGGGAAGCATG
ATAGTGAAGATAATCGAGACAAATAACAAATTGTTGAAACCACTCCCTCCGTTCCAAAATTGCTACTCGTTCACTTTTAT
AAGACCTAAGACCTTGAAGACATTTCACTCCCTTCGTTTCAAAGTTGCTACTCCCTTTGTTCACTTTTATAAGACCTAAG
ACCTTGAAGACATTTAAGAAATGAAACGACTTACAAAAGTGAAAGACCTTGAAGACATTTCAGACATAAAACGACTTACA
AAAGTGAAAGACCTTGAAGACATTTTAGACATGAGACGACTTACAAAAAATGAAAGACCTTGAAGACATTTCAGACATGC
AACGACTTATAAAAGTGAACGGAGAGAGTATTAGTAATACCAAACACTCTTTGATTTAGAAGAATCTTATAGGATTATAG
GAATTCTATAGGATAGGACTTCTATAGGAAAAATCCATTTAGGGCCCTTAAATTTATACGAATGGAATTTTATTTTTATG
GAAGAATTCTTCTTACATTTCAAAGAAAAATAAACATTAGTCTAGACTCAATGAAAAATCCTATGACATGAA
>chr2D_349
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----------------------------GTCTTTCAAG-TATTTTGGTTGGAGTTTGTGAAAGAATAAAAAATAAAGTAA
ATTTAAGGATGAGTTTTTTTTTGAA-CAGACCCAAG-------GGAGCCGATAATCTTGTTTTTCTTGGATCACATGTTT
TTAGAAGAAAAAAATGTTCCATGAATTTATGATGTTTTAT---AAATAACAAAAAAAATCCGTTTGAAAATATTCATGAT
TTTTACGTAATCTTCTGCTAGAAGCCTTAGAAGGAACTTATGACACAATCTCATCCTGGAGCCTCGACGCTGTTCCTCTC
TTTCCTTTCTTC-CCGGTGGAACCATCCAGGCGCGAGCATGGAAGACAGATGTACCCAAACTAGATGGCGTCGCATTG-A
AAATGAAAATGCGTTACCAGAAAAGTGCCACGCAGCCAGCCTTCGTGTCCTCGGCCCGGTACGTGCCCCGCCGTATGTGC
GGACACGTACCCCATCTGACCGGCGCCAGCGAACAAACAAATACTCCCACTCCCTCTTGCCCAGTTCCTGCTACC-----
-----CCTTCCTCTGCTTTCCTCTCGTAAAGTATAGTCCCGCGGTGCTGCTCTGTTCATTACTCGGGCGATCGGCGATCG
GTAGTGCACTTGCCGTAGCTGTATATTGATAGCGGGCTGATTGAGGTAGCTGCCTGCCATGTCTGGAAAATCGCTTGCAG
TGGCGCCGCGGTCTGACCCGGACAACGGGGCGGAGCGGCAGCCGTCGTCGGCGATGCTCGGGGGCGTCATGGGCTCGCTC
CGCGTCATCGAGCTCCAGCTCGTCGCCTTCATCATGGTCTTCTCGATGTCAGGCCTCGTCCCGCTCATCGACCTCGCCTT
CCCGGTCGTCACCACTCTCTACCTCCTCGCCCTCTCCCGCCTCGCCTTCCCTTCGCTCCACAGCAAGGTCGACGACGAGG
CCGCCGCCGTCCACTCCGCCGCGTCCCAGGAGATCTTCCGCGGAAGCAAGTAAGTTTTCATCACTATG---------TCA
GAGAAGATGAATCTATTTCTTTGATTGGTTAGCACCCGAGGATTGTTCTTGTATACATATTTGGATGCACTGTTCTGGAT
GATTAATTGTGCGCCGGCGCGCAAGCAGGCTGTTTCAGGTGTACGTGGTGATGGGCACCACGGTGGGGCTGTTCCTGCCG
CTGGCGCACGTCCTGGGTGGGTTCGCGCGCGGCGACGATGCCGCCGTGCGCTCCGCGACGCCGCACCTGTTCCTGCTCTC
CTGCCAGATCCTCACGGAGAACATCGTCGGCTCGCTCGGCGTCTTCTCGCCGCCGCTGAGGGCGCTGGTGCCGCTTCTCT
ACACCGTGCGCCGCGTCTTCGTCATCGTCGACTGGGTCTATGACGTGTGGACCAACAAGCTCATCACCCGCACCGCCCCC
GTTCAGGTGCGTTGATGTCACGATTTCCAGTTTCAGACATGAATCCTTTCCCATCGTGTGTCTTGACTACCGCGTTCCGC
GGCGTGATGCAGGATAAGGCCTGGGTGTGGTTCGGCAGGTACCTCGCGGTGGCGAACCTGGTCTACTTCTCCATCAACCT
GTTCGTCTTCCTGATCCCCAAGTTCCTCCCCCGCGCGTTCGAGAAGTACTTCCACACGCGCAACGAGGTGTACGCCAAGA
CGGCGGAGGACAAGCGGGCAAGGGATCTATCCTCGCTCGATGATGACAGTGCGCCAAAATCGGAGGTCTGCAAGAAGGCC
GACTGAGATCGATGATCGTGTTCGTTGCGCGGCGTTTGAGCTGCGCTCGTAGTGTGCTCTCTAGCTTCAACTTTGCTTAC
CTGTATGTGGACCGGTGTTTGTACATTTGGGTCTTCGCTTCTCAATTCTGAAATTCCGTGTGAATGTCGTTCTTGGTTCC
TCTTTACTCCCTTC-GTTTCAACATAATTGAAGTTCCAGATTTAGTTTAAGTAACTTTTTAAAGTTTGACCAGCTCAAAA
AATGTG-CCAGATCTACAACCCCAAACACACAATAGATGAAAATATATACACAATCTCAAAAAACTAACTTCATGTTCTA
TATGTT-GACTTAGTCAAACTTAAACAAGTTTTTTTTT-TTTGACTTTGAACTCGCAAGTCGGGGAACAAATAAAGTT--
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>chr2B_610
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----------------------------------------------------ATCCTGAAGCCTCGATGCTGTTCCTCTC
TTTCTTTTTTTCCCCGACGGAACCATCCAGGCGCGAGCATGGAAGACAGATGTAGCCGAACTCGATGGCGTGGCATAGAA
AAATGAAAATGCGTTACCCCAAAAGTGCCACGCAGCCAACCCTCGTGTCCTCGGCCCTGTAGGTGCCCCGCCGCGAGCGC
GGACACGTATCCCATCTGACCGGCGCCGGCGAACAAACAAATACTCCCACTTCCTTTTGCCCAGTTCCTGCTACTGTAAG
CCCTGCCTTCCTCTGCTTTCCTCTCGCAAATTTTAGTCCCGCGGTGCTGCTCTGTTCAGTACTCCGGCGATCGGCGATCA
GTTGTGCACCTGCCGTAGCTGTTGATTGATAGCGGGCTGATTGAAGTAGC----TGCCATGTCGGGAATATCGCTTGCAG
TGGCGCCGCGGTCTGACCCGGACAACGGGGCGGAGCGGCAGCCGTCGTCGGCGATGCTCGGGGGCGTCATGGGCTCGCTC
CGCGTCATCGAGCTCCAGCTCGTCGCCTTCATCATGGTCTTCTCGATGTCAGGCCTCGTCCCGCTCATCGACCTCGCCTT
CCCGGTCGTCACCACCCTCTACCTCCTCGCCCTCTCCCGGCTCGCCTTCCCTTCGCTCCACAGCAAGCTCGACGACGAAG
CCGCCGCCGCCCACTCCGCCGCGTCCCAGGAGATCTTCCGCGGAAGCAAGTAAGTTCTCATCGCTAACCCGCGCGCCTCA
GAGAAAATTAAC------------TTGATCAGCACCTGAGGGTTGTTCTTGTATACATATTTGGATGCACTGTTCTGGAT
GATTAATTGTGCGCCCGCGCGCAAGTAGGCTGTTTCAGGTGTATGTGGTGATGGGCACCACGGTGGGGCTGTTCCTGCCG
CTGGCGCACGTCCTGGGCGGGTTCGCGCGCGGCGACGATGCCGCCGTGCGCTCCGCGACGCCACACCTGTTCCTGCTCTC
GTGCCAGATCCTCACGGAGAACATCGTCGGCTCGCTCGGCGTCTTCTCGCCGCCGCTGAGGGCGCTGGTGCCGCTTCTCT
ACACCGTGCGGCGCGTCTTCGTCATCGTCGACTGGGTCTACGACGTGTGGACCAACAAGCTCATCACCCGCAGCGCCCCC
GTTCAGGTGCGTTGATGTCACGATTTCCGGTTTCAGATATGAATCCTTTCCCATCGTGTGTCCGACTATT-GCGTTCCGC
GGCGTGATGCAGGATAAGGCCTGGGTGTGGTTCGGCAGGTACCTCGCAGTGGCGAACCTGGTCTACTTCTCCATCAACCT
GTTCGTCTTCCTGATCCCCAAGTTCCTCCCCCGCGCGTTCGAGAAGTATTTCCACACGCGCGACGAGGTGTACGCCAAGA
CGGCGGAGGACAAGCGGGCGAGGGATCTGTCCTCGCTCGATGATGACGGTGCGGCAAAATCGGAAGTCTCCAAGAAGGCC
GACTGAGATCGATGATCGTGTTCGTTGCGCCGCGTTTGAGCTGCGCTCGTAGTGTGCTCTGTAGCTTCAACTTTGCCTAC
CTGTATGTGGACCGGTGTTTGTACATTTGGGTCTTCGCTTCTCATTTCTGAAATTCTGTGTGAATGTTCTTCTTGCTTCC
TTTTTACTCCCTTCAGTTTCAAAATATTTGAAGTTCTAGATTTATTTTAAGT-------------TTGACCGACTCAAAA
AATGTGCCATGATCTACAACACCAAATACACATAGTATGAAAATA-----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS--------S-------S-SS----------S---------S
---S-----------S------S--S---------SSSSSSSS------------S------S--------S--------
----------SS-S-------S--S--------S-S-SSSSSS-----------S------S-----------S------
------S----------------------S-----S-----S-SS-----------------------------------
-------------------------------------------S---------S-----------S--------------
------------------------------------------------------------------------------S-
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------------------------------------------------------------S-------------------
--------------------------------S------------------------------------------S--S-
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--------------------------------------------------------------------------S-----
--------------------------------------S-----------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------S-----------------------------------------
---------------------------S-----------------------------------S----------------
----S--------------------------------------S------------------------------------
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---------------------------------------------------------S---------------S------
------------S--S--------S-------------------------------------------------------
----------------S---------------------------------------------------------------
-----------------------------------------------------------------------S--------
-------------------------------------------------------------------S------------
-----------------------------------------------------------S--------------------
------S---------------S-------S-S------------------S----------S-S---------------
S-----S-----S---------S---S-----SSSSSSS-----S---------S------------S---S------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_442
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----------------------TAAGCAGACCCAAACCTCGG--------------------------------------
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>reverse_2479
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------------------------------------------------------------------------------TG
ACACCCGCGTCTGTTAAA--------------------------------------------------------------
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