>input_sequence_62084
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-------------------------ATGTCATCCTCTGACAACGCCAAGAAAGCTGACAAAGACCAGGATGAAGGAGAGG
GAGGATTCTTCGACAAAGTTAAGGATTTCATCCAAGACATTGGAGAAAAGATTGAAGACGCAGTCAGCTTTGGAAAGCCT
ACCGCTGACGTTACTGGAATCCACATACCTCAAATTAGTCTTGAGAAGGTAGAGCTCATCGCTGATGTTCTGATTACAAA
CCCAAACCCTGTACCCATCCCTCTTGTCGACATTGAATACCTTATTGAAAGCGAAGGGAGGAAGCTCATGTCCGGAACAA
TCCCGGATGCTGGAACCATCGAAGCACATGGCTCAGAGACTGTTAAAATCCCCGTGTTGCTCATCTATGATGACATCAAG
AGCACATATGGTGACATAAAGCCCGGGAGCATCATCCCTTACTTGGTCAAAGTTATTCTCCATGTTGATGTCCCAGTCAT
CGGCAGGATCTCCTTACCTCTCGAGAAAGCCGGTGAGATCCCAGTGCCTTACAAGCCAGACGTTGATATTAGCAAGATCA
AGTTTGAGAAGTTTTCTTTTGAGGAGGCGACCGCGACTCTACATCTGAATCTCGACAACAAGAATGACTTCGACCTGGGA
CTTAATGCCCTGGATTATGAGATCTGGCTCTCCAATGTGAGCATTGCTTCCGCTGAGACGAAAGAGTCTACAAACATTAA
GAAGCAGGAAGTAACCACCATGACCTTGCCGATCAGCTTCAGGCCTAAGGATTTTGGGTCTGCTATGTGGGATATGATAA
GGGGAAAGGGCACTGGTTACACCATAAAAGGGCATATTGATGTGAACACTCCCTTTGGACACATGAAGATACCTATTAGC
AGAGAGGGTGGAACAACTCGATTAAAGAAGGAAGATGATGATGACGATAACGATGAGGTATACTATGTTGGTTTCTATAG
TGTTTCATCTACAATTTCCATTAGACATTCATCAAATGTTGACTTGATAAATACTTGCATGTACATTTGGATATCCATAT
CACTTGTATCTTACCCAGTGCCATTTTATCTAGGACTAA-----------------------------------------
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>chr3D_1_TraesCS3D01G091400
CATTTTTGTCCGGGACAAGGGGGAGGGGCGACCAAACGTCGTTGGTGTAAGTTAGGGATTGGCCTGGTCAT-AAGAGGAC
CGGCCTGGCATAGAATTAGGGATTCTGTTGATCCATGAAGATGAATTTTACATAAACTTCATAAACTATTTGGAT-----
-------GTTATTTATAGAAAATTC---ATATATGTGTTACCCCAAACTCCGTTGACAAAACGATGTCTAGATGGTGCTT
AGGCACGAAGCCTATGCAGGACAAGCAAGAAATTGTCCACTCCAGAATGAATCATTCCATATTAAACTGACACGCCAAAT
GAGACGTATTGAACTTTATATTTAATTCAGATGTTTTTTGTGCAAAATTACATGTGC--------TTTACATGCATGGAA
CTAAGTATTGAAATCAATCGCCATTATATTTGCCATATAATTTGAATGAGTTGATTATCTTATGGCATCTACTTCTACTA
GTCCTATTCCAGATGTGCAATACAGCAATAAGCTCTCACTGCTAATGTCAA-TAAA------------------------
----AAAATGTCAATAACAAAAGAAAAACACAAAAGTTCCTTCCGAGGTTCTTCTCCGAGGATGGTGGACTATTTTGGAT
GTGTCTATTTATTGAAATGTATTGTGTTTAACTTATTTTATG--------------------------------------
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----------------------------------------------------CCAAATTAGT-AAATATGTTGGTTGCCA
GTGATAAGAAAATACCGAGCCATGATGTCGTGAATACCTAATGGAATCACCTATTTCCCTTGATCTAGACATTGTTAGTT
TGTTACAAGTGCCCCTCTTAATTAAAGGCAAAACGGGGTAGGGATGTAGTATTGGAATAGTC-TTTTTTGTTCTAAATAT
GCTAGTTTTATGTATTGCCAAGCTCTAGGTCGTTTCTTGTTTAGGTTTTTTCCATTGATTCTGAAGCTATTTCGTCAGTG
TCGTTTTTTCTCTCAATGCAATATCATGTAGTTATCCTTAATGTATGTTCTCTAAATTATATTTCTATTAGAAATTGATA
AGTAAACTATTGTTTGTATCACAGCATGTCATCCTCTGACAACGCCAAGAAAGCTGACAAAGACCAGGATGAAGGAGAGG
GAGGATTCTTCGACAAAGTTAAGGATTTCATCCAAGACATTGGAGAAAAGATTGAAGACGCAGTCAGCTTTGGAAAGCCT
ACCGCTGACGTTACTGGAATCCACATACCTCAAATTAGTCTTGAGAAGGTAGAGCTCATCGCTGATGTTCTGATTACAAA
CCCAAACCCTGTACCCATCCCTCTTGTCGACATTGAATACCTTATTGAAAGCGAAGGGAGGAAGCTCATGTCCGGAACAA
TCCCGGATGCTGGAACCATCGAAGCACATGGCTCAGAGACTGTTAAAATCCCCGTGTTGCTCATCTATGATGACATCAAG
AGCACATATGGTGACATAAAGCCCGGGAGCATCATCCCTTACTTGGTCAAAGTTATTCTCCATGTTGATGTCCCAGTCAT
CGGCAGGATCTCCTTACCTCTCGAGAAAGCCGGTGAGATCCCAGTGCCTTACAAGCCAGACGTTGATATTAGCAAGATCA
AGTTTGAGAAGTTTTCTTTTGAGGAGGCGACCGCGACTCTACATCTGAATCTCGACAACAAGAATGACTTCGACCTGGGA
CTTAATGCCCTGGATTATGAGATCTGGCTCTCCAATGTGAGCATTGCTTCCGCTGAGACGAAAGAGTCTACAAACATTAA
GAAGCAGGAAGTAACCACCATGACCTTGCCGATCAGCTTCAGGCCTAAGGATTTTGGGTCTGCTATGTGGGATATGATAA
GGGGAAAGGGCACTGGTTACACCATAAAAGGGCATATTGATGTGAACACTCCCTTTGGACACATGAAGATACCTATTAGC
AGAGAGGGTGGAACAACTCGATTAAAGAAGGAAGATGATGATGACGATAACGATGAGGTATACTATGTTGGTTTCTATAG
TGTTTCATCTACAATTTCCATTAGACATTCATCAAATGTTGACTTGATAAATACTTGCATGTACATTTGGATATCCATAT
CACTTGTATCTTACCCAGTGCCATTTTATCTAGGACTAAAAATTGAGGAAACACACTTTCCTGGAGCTGAGTTATTGCTT
TGAAG-TTTTAACAAATGGAGCCATATGACTCGAGAGCACTTTGTATGCTAATCATGTTCTTACATTTGAATCGCTGCTA
ACTGTGAGAATTTTGAGATATAAAAGATAGTGTAACACCTTTCTCATCTTGACGCTTTTTGTATTTGTGATTCCAATTCG
TGGTCAAGAAGTAATTAAGATGTCCAATGGCACAAAGTCATTGTTGTTTGGAGTTTCTCTAGTCTCTACTATTGCGCTGA
CATTCCATTATATGGGAAAAAACAATTTACTTCCAAAGAGTCCAAGCAACGA-GGAAAATAACTAAGGCAGCACTGACAT
AGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
AGTAGCAAATGTTATTGGTGTGCCACGGCTTTTTAGTAAGAGAAAGTGCAAAGTCTACTAGTGTACGCTGCTCAATTATA
TTGTGGTAACCTTGTATTCTTGTGTAGATGCTTAGAAACGGTCTTATCATAGAGTGAGATGTCCTGTGTGATGGCTTGTG
TTCATAGATAGATGAATTTGCCTAAATTAGAAAAGGGAATACTTGGCACATGCAAGTGTAGGTTGAGGATTGGTACTGGA
CTTCACTTCTACGCGATAAACATACAAAGTTTGCTATGCGCACTAGTGGTACACAACATAGACACAAGAAACTAGTTTTA
C
>chr3B_1
CATTTTTGTCGGGAACAAGGGGGAGGGGCGACCAAACGTCGTTCATGTAAGTCAGGGATTGGCCTGGTCATCAAGAGGAC
CGGCCTGGCATAGAATTAGGGATTCTGCTGATCCATGAAGATGAATTTTACATAAACTTCATAAACTA------T-----
-------GTAATTTATATAAAAATTCATATATATGTGTTACCCCAAGCTCTGTTGACAAAGCGTTGCCTAGGTGGCGCTT
AGGCACAAAACCTATGCAGGACAATCAAGAAATTGTCCACTCCATAACGAATCATTCCCTATTGAACTAGCACGCCAAAT
GAGACATATTGAGCTTTATATTTAATTCCGATATTGTATGTGCAAAATTATATGTGATACTCAATTTTACATGCATGGAA
CCAAGTATTGAAATTCATCACCATAATATTTGCCATATAATTTGAATGAGTTGATTATCTTATGGCAT------------
------------------------------AGCTCTTACTGCTAATGTTAA-TAGGTTAGTAGGTCAACTAAAAAGAGCT
TTACAAAATGTCAATAACAAAAGGAAAATACAAAAGTTCCTTCCGACGTTCTAAACCAAGGATGGTTGACTATTTTGGAT
GTGTCTATTTATTGAAATGTATTATGTTGAACTTATTTCATGATCTACTCTAAAAAATAACCATAAACATAGAAAAAAAC
TGGTTGGCCAAACAAAATAAAATAGACAGAGGCTAGTTTAAAAAGCTACATCATCATGATCCACCTTAATGTTGAGCATT
GAGTGTTATCTATACACATATTATTGACACAAATTCTCATTTGTTTTCTCAATTGTGCCTCTTAACCCTAGCACGCCCGT
TCTTTAGCTAAGGGATGACAAGTCGTTGCCATATCATCTGTATTTATTTCTTCCAAATTAGTAAAATATGTTGGTTGCTA
GTGATAAGAAACTACCGAGCCATGATGTCGTCAATACCTAATGGAATCACCTATTTCCTGTTATCTAGACATTGTTAGTT
TGTTACAAGTGCCCCTCTTAA----AGGCAAAACGGGGTAGGAATGTAGTATTGGATTAGTC-TTTTTTGTTCTAAATAT
GCTACTTTTGTGTATTGCCAAGCTCTAGGTCATTTCTTGTTTAGTTTTTTTCCGTTGATTCTAAAGCTATTTTGTCAGTG
TCGTTTTTTCTCTCAATGTAATATCATGTAGTTATCCTTAATGTATGTTCTCTAAATTTTACTTCTATTAGAAACTGATA
AGTAAACTATTGTTTGCATCACAGCATGTCATCCTCTGACAACCCCAAGAAAGCAGACAAAGACCAGGATGAAGGAGAGG
GAGGATTCTTGGACAAAGTTAAGGATTTCATCCAAGACATTGGAGAGAAGATTGAAGACGCAGTCAGCTTTGGAAAGCCT
ACCGCTGACGTTACTGGAATCCACATACCTCAAATTAGTCTTGAGAAGGTAGAGCTCATAGCTGATGTTATGATTACAAA
CCCAAACCCTGTACCCATCCCTCTTGTCGACATCGAATACCTTATTGAAAGCGAAGGGAGGAAGCTCATGTCCGGAACAA
TCCCGGATGCTGGAACCATCAATGCACATGGCTCAGAGACTGTCAAAATCCCCGTGTTGCTCATCTATGATGACATCAAG
AGCACATATGGTGACATAAAGCCCGGGAGCATCATCCCTTACTTGGTCAAAGTTATTCTCCATGTTGATGTCCCAGTCAT
TGGCAGGATCTCCTTACCTCTCGAGAAAGCCGGTGAGATCCCTGTGCCTTACAAGCCAGACGTTGATATTAGCAAGATCA
AGTTTGAGAAGTTTTCTTTCGAGGAGGCGACCGCGACTCTACATCTGAATCTCGACAACAAGAATGACTTTGACCTGGGA
CTTAATGCCCTGGATTATGAGATCTGGCTCTCCAATGTGAGCATTGCTTCTGCTGAGACGAAAGAATCTACAAACATTAA
AAAGCAGGAAGTAACGACCATGACCTTGCCGATCAGCTTCAGGCCTAAGGATTTTGGGTCTGCTATGTGGGATATGATAA
GGGGAAAGGGCACTGGTTACACCATAAAGGGGCATATTGACGTGAACACTCCCTTTGGACACATGAAGATACCTATTAGC
AGAGAAGGTGGAACAACTCGACTAAAGAAGGAAGACGATGACGACGATAACGATGAGGTATACTATGTTAGTTTCTATAG
TGTTTCATCTACAATTTCCATTAGACATTCATCAAATATTGACTTGATAAATACTTGCATGTACATTTGGATATCCATAT
CACTTGTATCTTACCCATTGCCATTTTATCTAGGACTAAAAATTGAAGAAATGCACTCTCATGGAACCGAGTTAATGCTT
TGAAG-TT-TAACAAGTGGCACCCTATGACTCGAGAGCACTTTGTATGCTAATCATGTACTTACATTTGAATCGCTGCTA
ACTGTGAGAATTTTGAGATATTAAAGATTGTGTAACACTTTTCTCGTCTTGACGCTTTTTGTATTTGTGATTCCAATTCG
GGGTCCAGAAGTAATTAAGATGTTCAATGGCACAAAGTCATTGTTGTTTGGAGTTT-------TTCTACTATTGCTCTGA
CATTCCATTATATGGGGAAAAATAATTTGCTTTCAAAGAGTCCAAGCAACAA-GGAAA-TAACTAAGGTGGCGCTGGCAT
AGATTCTG---CACCCCCCCTCCCGGGTCTCCGATGGTTGGGATCACATCTCCAAGGTCCGTGTGTATGCCAAAATAT--
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------------------------------------------------------------------------------AG
AGTAGCAAATGTTATTGGTGTGCCGTAGCGTATTAGTAAAAGAAAGTGCAAAGTCTACAGGTGCACGCTACTCAATTTTA
TTGTGGTAGCCTTGTATTCTTGTGTAGATGTTTAGAAACAGTCTCATCATAGATTGAGATGTCAGGTGTGATGGCTTGTG
TTCATAGATAGATGAATTTACCTAAAGTAGAAAAGGGAATACTCAGCACATGCAAG-GTAGGTTGAGGACTGGTACTATA
CTTCACTTCTATGCAATAAAAATTTGAAGTTTGTTATGCGCATTAGTGGTATACAACATAGACACAGGGAACTAGTTTTA
C
>chr3A_3
TTTTTG-GTCAGGAACAAGGGAGAGGGGCGACCAAACGTTGTTCATGTAAGTTAGGGATTGGCATGGTCATCAAGATGAC
CGGCCTGGCATAGAATTACGGATTCTGCTGATCCTTGAAGAGGAAATTTACAAAAACTTTATAAACTA------TATATA
TTCAGATGTAATTCATAGGAAAATTCCTAT-------TTATACCAAGCTCTGTTGACAAAGCACTGTCTAGGTGACGCTT
AGGCACAAAGCCTATGCAGGACAATCAAGAAATTGTACGCTCCAAAATAAATTATTCCATATGAAACTGGCATGTCAAAT
GAGACATGCTGAACTTTATACTTAATTCAGATGTTGTTTGTGCAAAATTACATGTGATACTTAATTTTACATGCATGGAG
CTAAGTATTGAAATTCATCACCATTATATTTGCCATATAATTTGAATGAGTTGATTATCTTATGGCGTCTACTTTTACTA
GTCCTATTCCAGATGTGCAATAG--------GCTCTCACTACTAATGTTAAATAGGTTAGTAGGTCTACTAAAAAGAGCT
TTACAAAATGTCAATGACAAAAGAAAAATACAAAAGTTCCTTCTGCCGTTCTTCACCGAGGATGCTTGACTATTTTGGAT
GTGTCTATCTATTGAAATGTATTGTGTTGAACTTATTTTATGATCTACTCTGAAAAATAACCACAGACATAGGAAAAAAT
GGGTTGGCCAAACAAAATAAAATAGGCAAAGGCTAGTTTAAAAGGCTACATCATCATAATCCACCTTAATGTCGAGCATT
GAATGTTACCTATACACCTATTATTGACACAAATTCTCATTTGTTTTCTCAACTGTATCACTTAATCCTAGCACGCCCGT
TCTTTAGCTAAGGGATGACAAGCCGTTGCCATATCATCTGTATTTATTTCTTCCAACTTAGTA-AATATGTTGGTTGCCA
ATGATAACAAAATACCGAGCCATGATGTTGTGAGTACCTAATGGAATCACCTATTTTCCTTGATCCAGACA--------T
TGTTACAAGTGCTCCTCTTAA----AGGCAAAACGGGCTAGGGATGTAGTATTGGAATAGTATTTTTTTGTTCTAAATAT
GCTACTTTTATGTATTGCCAAGCTCTAGGTCGTTTCTTGTTTAGGTTTTTCCCGTTGATTCTGAAGCTATTTTGCCATTG
TCGTTTTTTTTCTCAATGCAATACCATGTAGTTTTCCTTAATGTATGTTCTCTAAATTTTACTTCTATTAGAAACTGATA
AGTAAACTATTGTTTGTATCATAGCATGTCATCCTCTGACAACCCCAAGAAAGTTGACAAAGACCAGGATGAAGGAGAGG
GAGGATTCTTCGACAAAGTTAAGGATTTCATCTCAGACATTGGAGAAAAGATTGAAGAAGCAGTCAGCTTTGGAAAGCCT
ACTGCTGACGTTACTGGAATCCACATACCTCAAATTAGTCTTGAGAAGGTAGAGCTCATTGCTGATGTTCTGATTACAAA
CCCAAACCCTGTACCCATCCCTCTTGTCGACGTCGAATACCTTATTGAAAGCGAAGGGAGGAAGCTCATGTCCGGAGCAA
TCCCAGATGCTGGAACCATCGATGCACATGGCTCAGAGACTGTCAAAATCCCCGTGTTGCTCATCTATGATGACATCAAG
AGCACATATGGTGACATAAAGCCCGGGAGCATCATCCCTTACTTGGTCAAAGTTATTCTCCATGTTGACATACTAGTCAT
CGGCAGGATCTCCTTACCTCTCGAGAAAGCCGGTGAGATCCCGGTGCCTTACAAGCCAGATGTTGATATTAGCAAGATCA
AGTTTGAGAAGTTTTCTTTCGAGGAGGCGACCGCGACTCTACATCTGAATCTCGACAACAAGAATGACTTCGACCTGGGA
CTGAATGCCCTGGATTATGAGATCTGGCTCTCCAATGTGAGCATTGCTTCTGCTGAGACGAAAGAGTCTACAAACATCAA
GAAGCAGGAAGTAACCACCATGACTTTGCCGATCAGCTTCAGGCCTAAGGATTTTGGGTCTGCTATGTGGGATATGATAA
GGGGAAAGGGCACTGGTTACACCATAAAGGGGCATATTGATGTGAACACTCCCTTTGGACACATGAAGATACCTATTAGC
AGAGAGGATGGAACAACTCGACTAAAGAAGGAAGATGATGATGGCGATAACGATGAGGTATACTATGTTAGTTTCTATAG
TGTTTCATCTGCAATTCCCCTTAGACATGCATCAAATGTTGACTTGATAAATACTTGCATGTACATTTGGATATCCATAT
CACTTGTATCTTACCCATTGCCACTTTATCCAGGACTAAAAATTGAAGAAATGCACTTTCCTGGAACAGAGTTAATGCTT
TGAAGTTT-TAACAAATGGCGCCCTATGACTCGAGAGCACTTTGT-------------TCTTACATTTGAATCGCTGCTA
ACTGTGAGAATTTCGAGATATAAAAGATTGTGTAACACTTATCTCGTCTTGACACTTTTTGTATTTGTGATTCCAATTTG
GGGTCAAGAAGTAATTAAGATGTTCAATGATACAAAGTCGTTGTTGTTTGGAGTTT-------CTCTACTATTGCTCTGA
CATTCGATTATATGGGGAAAA-CAATTTGCTTCCAAAGAGTCCAAGCAACGAGGGAAA-TAACTAAGGTGGCGCTGGCAT
GGAGTCTACAACACCCCCCCCCCCGGGTT-----------GGGTCACATCTCCAAGGTCTATGCGTATGCAGAAATAT--
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------------------------------------------------------------------------------AG
AGTAGCACATGACATTGGTGTGCCGCGGCTTATTGGTAAGAGAAAGTGCAAAGTCTACTAGTGTACTCTGCTCAA-TTTA
TTGTGGTAGCCTTGTACTCTTGTGTAGATGTTTACAAACAGTCTCATCATAGATTGAGATGTCCTGTCTGATGGCTTGTG
TTCATAGGTAGATGAATTTATCTAAAATAGAAAAGGGAATACTCAACACATGCAAGTGTAGGTCGAGGACTGCTACTAGA
CTTCACTTCTATGCGATAAAAATTCAAAGTTTGTTATGCACATTAGTGGCACACAACATAGACACGGGGACCTAGTTT--
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>SNPs
----------S--S-----------------------------SS-----------------------------------
---------------------------S----------------------------------------SSSSSS------
---------S------------S-S---------------------S---S---------S--S-------S---S----
------S-----------------S-------------------S------------------------S----------
-----S-----------------------------S--------------------S-----------------------
--------------SS---S------------------------------------------------------S-----
----------------------SSSSSSSS------------------S-----SS------------------------
----------------------------S-----------------S-------S-----------S-------------
----------------------------S---------------------------------------------------
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---------------------SSSS-------------------------------------------------------
----S------------------------------------------------S------------------S-------
----------------------------------------------------------S--S------------S-----
-------------------------------------------S------------------------------------
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-----------------------------------------------------------S--------------------
---------------------------------S----------------------------------------------
----------------------S--------------------S------------------------------------
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------------------------------------------S-------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------S-----------------------------
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----------------------------S---------------------------------------------------
---------------------S-----------------------------------------------S----------
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-----------------S----------------------------S----SS------------S-S------S-----
--------S----------S---S--------------------------------------------------------
----------------------------S---------S------S----------------------------------
S----------------------S--------------------------------SSSSSSS------------S----
----------------S-----------S-----------------------------S---------SS--S---S---
----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
------------------------S------S---------------------------------------------S--
--------S---------------------S--------S----S--------S--------------------------
-------------------S------S----------------SS------------------------S-------S--
-----------S--------S--S---------S--------S-----------------------S-S-----------
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>forward_326
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------------------------------------------------------------------CTGACACGCCAAAT
GAGACG--------------------------------------------------------------------------
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>reverse_2372
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---------------------------------------------------CACACTTTCCTGGAGCTGAGT--------
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