>input_sequence_62081
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-------GCTTTGACGGACAGCATCGATCTCTATCTCTTCTCTTCTCTCTTCTCCGTCCATCTCCTCCTCTCTGCGCAAT
TCTCTCCTCCGGTAGTACGAGCGAGCATGACAAGCCCCAGGCTGAAGCTCTTCGGCTTCCACTTCTCCTCGGCGGAGGAG
GAGAACCACACCACCATGGACACGCCCGAGCACGAGGCGGCCGAGCCGGAGAAGGGCGGCTCCGACTCCTCCTCCTCGTC
TACCACCACGACCACGGCCACGGCGGCGGCTGCGGCGGGCGGCGGGGGTGGCGAAGGGAGGCGGTACGAGTGCCAGTACT
GCTGCCGCGAGTTCGCCAACTCGCAGGCGCTTGGCGGCCACCAGAACGCGCACAAGAAGGAGCGGCAGCAGCTCAAGCGC
GCGCAGCTGCAGGCGGCCGCGGCCGCCGCGGGACGCGCGGCCGGGGGAGGCGCGCTCTACCCTCGTGGCGCCGGCGGCAT
GAACCCCATGGTGTCCGCCTTCGCGCAGCCGCCGCACCTCCTCGGCGGCGCCGGCGACGGCGGGGCGGGGCCCACCAGCT
GGGTCTACTTCTCCCCGCGCGCGGCCGCGGTGGCCGGCGGCGCCCAGGGCCAGCAGTTCCACGTCTCCCACGGCTGCGTC
TTCCCCTCCGGCCGCTCCACCCCGGCCTCCGCCTCGCCGGCCGTGTTCTCCTACGCGCCGACGGCCTCCTCCGCGGCGCA
GGCCGCCGCGGCGCCCTACGTCGTGCAGGCCGACGTGGTCGACCACCACGGCCGGAGGCTCCACGCCGCCAGCTTCCCGA
GATACCCCGGCATGGTGATGGCGCCGGAGCCCATGGCCGCCGCGCCCGAGGACGCGCTGGGGCTCGACCTGCAGCTCAGT
TTGTGACGACTCCGGT----------CCGCGTACACTGTTGCTCCGGTAAAAA--GGAAGGGATGAATTACCCACCCAC-
---TACTACTAGTACCTGCATGCGTCCGAACTAAAGCTCGATCGTTCGATCCTCGATCGGTAGCACTACTAGGTAATTAA
ATTAGCTAGCGGTAGTAAGTAAAGTATAAGTAATTTT-------------------------------------------
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>chr3B_1_TraesCS3B01G048000
CCACTATAGTCTAGAATGGCGCCCCTAGTACGTATTAGT-GGCCACTTAGTTCTGGCTATGGCTAGTGACACATTAGTAT
GATTAAACAATATCTTATCTTAGCCAGATATAGGTATAGCTAGGTAGT--------GTATATAGTACTCTGATCATCTAG
CTATAGCTAGCTAGCTAGCTGAATAATAATGTTTTGATCGGGTAGCTACGCGC------ATAATATATCTCGGCCGGGGT
CCTATCATGCGTGTGTGTGTGTG----TGTGTCGACGATGGTAATAAACCAAGCATGAGTCGCCCT-----GTCCAGTCC
AGTCCAGGCGCGTAGTACGTGCATAAAAT------------AGTGCAAGTGCAAGATATGGAGCCCGGCCGGCGGCCGAA
GCGCAATCTAGAACTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCTCTCACACACACACGACCTTCTCTCTCTATCTCTTCTAGCAGTGGTAGTAGTAGTACT
ACTTTGCATCTGCACAGTCCTTCTCTCTCTAAAGTGCACGGGGGATATAAAATAATG-TTAGGAGAGGAGGGAGGAGGAG
AGCCCCTGTAGATGCGTGTGGGTGTATGTATTCAAATCATACATGCAGAGTTCTTTCACCTATATCCACTGGGAGGACTA
CTGTGCGTGC----------CTCCGGCTCCAGGTGTTATATATACTGCCCCTGCCCACCTGACACAGCCACAGCCCATGC
ACATCCGGCTTTGACGGACAGCATCGATCTCTATCTCTTCTCTTCTCTCTTCTCCGTCCATCTCCTCCTCTCTGCGCAAT
TCTCTCCTCCGGTAGTACGAGCGAGCATGACAAGCCCCAGGCTGAAGCTCTTCGGCTTCCACTTCTCCTCGGCGGAGGAG
GAGAACCACACCACCATGGACACGCCCGAGCACGAGGCGGCCGAGCCGGAGAAGGGCGGCTCCGACTCCTCCTCCTCGTC
TACCACCACGACCACGGCCACGGCGGCGGCTGCGGCGGGCGGCGGGGGTGGCGAAGGGAGGCGGTACGAGTGCCAGTACT
GCTGCCGCGAGTTCGCCAACTCGCAGGCGCTTGGCGGCCACCAGAACGCGCACAAGAAGGAGCGGCAGCAGCTCAAGCGC
GCGCAGCTGCAGGCGGCCGCGGCCGCCGCGGGACGCGCGGCCGGGGGAGGCGCGCTCTACCCTCGTGGCGCCGGCGGCAT
GAACCCCATGGTGTCCGCCTTCGCGCAGCCGCCGCACCTCCTCGGCGGCGCCGGCGACGGCGGGGCGGGGCCCACCAGCT
GGGTCTACTTCTCCCCGCGCGCGGCCGCGGTGGCCGGCGGCGCCCAGGGCCAGCAGTTCCACGTCTCCCACGGCTGCGTC
TTCCCCTCCGGCCGCTCCACCCCGGCCTCCGCCTCGCCGGCCGTGTTCTCCTACGCGCCGACGGCCTCCTCCGCGGCGCA
GGCCGCCGCGGCGCCCTACGTCGTGCAGGCCGACGTGGTCGACCACCACGGCCGGAGGCTCCACGCCGCCAGCTTCCCGA
GATACCCCGGCATGGTGATGGCGCCGGAGCCCATGGCCGCCGCGCCCGAGGACGCGCTGGGGCTCGACCTGCAGCTCAGT
TTGTGACGACTCCGGT----------CCGCGTACACTGTTGCTCCGGTAAAAA--GGAAGGGATGAATTACCCACCCAC-
---TACTACTAGTACCTGCATGCGTCCGAACTAAAGCTCGATCGTTCGATCCTCGATCGGTAGCACTACTAGGTAATTAA
ATTAGCTAGCGGTAGTAAGTAAAGTATAAGTAATTTTTAGCTTCCGGGCTAGCTTTGGAGTGTTAAGCCGGCCGACC---
GCCTTGTAACCGAACCAAC---TCCCGTACGTTCTTGATATGATCCGAGATCGATCGATGACGCCTTATAAATTCCTGGT
CAAATCCATTCATCCATCCATCTGTCTCC-------GCCATTTGCAGTGTTGATCAATATCACCCATTTTCTTGCC----
--GATGTGTTGATCGCAATTGGTACG----TCCATCGACGAGGACATGTGTTTGATTTGTCAAGGA--------------
-----------------------GAGTTCAAACAAACAAACAAAAATTCAAGGATGTTCACATGCATGACAATTACGCAA
GTGTATTCTAAACGGGCATGCATACGCACATCCATTTATAATCAAGGCGGCAGGCACTTGGTGATAGGTGAGTGCACCAT
GAGTCAGTTCCCCTCTCGCTCCATTTCCATCATGCCACCTAATAAACTTTGTTTGCCCCCTTTTAATTACATCC-GGTTG
CCCTAATTGACAATCTCCTGTTACAAA---CATGCATGGC-ACTACTACCAGTGCCGACCAATTAGCACTAGTAACAAAT
CTCACTTCCTCTAGAATTAACCCAAGAGA--AGGCCACTTTTGGTTGCAGTAGACAGTTTAGTAGTTTACCCATATAGGC
CATCCTCTACTACTAGCTACACTAGCAAGCACACACACATGTAC-TACACATGCAGGATTTACCTCCATATTTTACAGAC
GCGCATGCATATGCATCACGAGG----GAGAGAGTACGTGTGGTG--GGGCGTGGGCGCATGGGTTGATTGGACGCGGCA
CCGCACGCAAGGCGTTGAAGAGTGCACCACCAAAGCCAGCGTGCGTGCGTGCGTGCATGGGT--GTGATGGAACAAACCT
TGTTCCGAGTGCATGCAAAAGGCGCCTGCGTGTGGCGCACCGTGCCGCCCTCTGTGTCTAGTACTTCGCTCCAGGCCAAA
CCGGCCGTGCGATATCCACTGATCCCGCCACTGTTCGCCGTACCCTACGTGTCAACCCCACGCCACCCCACTG
>chr3D_1
CCACTATAGTTTAGAATGGCGCCCCTAGTACGTATTAGTTGGCCACTTAGTTCTGGCTATGGCCAGTGACACATTAGTAT
GATTAAACAATATCTTATCTTAGCCAGATATAGGTATAGCTAGGTAGT--------GTATATAGTACTCTGATCATCTAG
CTA------GCTAGCTAGCTGAATAAAAATGCTTTGATCGGGTAGCTACGCGC------ATAATATATCTCGGCCGGAGT
CCTATCATGCGTGTG----TGTG----TGTGTCGACGATCGTAATAAACCAAGCATGAGTCGCCCTGCCCAGTCCAGTAC
AGTCCAGGCGCGTAGTACGTGCATAAAATAGTGCAAGTGCAAGTGCAAGTGCAAGATATGGAGCCCGGCCG-------AA
GCACAATCTAGAACTCAACAACGCTGTCTCTTGTGCTCCTGTTCACAACCACCACTGATCCCCTCTCCCCCTCTCT----
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---------------------CTCTCACACAC-----ACCTTCTCTCTCTATCTCTTCTAGCAGTAGTACTAGTACTA--
ACTTTGCATCTGTACAGTCCTTCTCTCTCTAAAGTGCATGGGGGATATAAATAATGTTAGGAGAGAGGAGGGAGGAG---
--CCCCTGTAGATGCGT----GTGTATGTATTCAAATCATACATGCAGACTTCTTTCACCTATATCCACTGGGAGGACTA
CTGTGCTTGCCTGTGCGTGCCTCCGGCTCCAGGTGTTATATATACTGCCCCTCCCCACCTGACACAGCCACAGCCCATGC
ACATCCGGCTTTGACGGACAGCAGC-ATCTCCATCTCCTCTCT-----CTTCTCCGTCCGTCTCCTCCTCTCTGCTCAAT
TCTCTCCTC---TAGTACGAGC----ATGACGAGCCCCAGGCTGAAGCTCTTCGGCTTCCACTTCTCCTCGGC---GGAG
GAGAGCCACACCACCATGGACACGGCCGAGCACGAGGCGGCCGAGCCGGAGAAGGGCGGCTCCGACTCCTCCTCGTCATC
TACCACCACGACCACGGCCACGGCGGCGGCTGCGGCGGGCGGCGGGGGTGGCGAGGGGCGGAGGTACGAGTGCCAGTACT
GCTGCCGCGAGTTCGCCAACTCGCAGGCGCTGGGCGGCCACCAGAACGCGCACAAGAAGGAGCGGCAGCAGCTCAAGCGC
GCGCAGCTGCAGGCGGCCGCGGCCGCCGCGGGACGCGCGGCCGGGGGAGGCGCGCTCTACCCTCGTGGCGCCGGCGGCAT
GAACCCCATGGTGTCCGCCTTCGCGCAGCCGCCCCACCTCCTCGGCGGCGCCGGCGACGGCGGGACGGGGCCCACCAGCT
GGGTCTACTTCTCCCCGCGCGCGGCCGCGGTGGCCGGCGGCGCCCAGGGCCAGCAGTTCCACGTCTCCCACGGCTGCGTC
TTTCCCTCCGGCCGCGCCACCCCGGCCTCCGCCTCGCCGGCCGTGTTCTCCTACGCGCCGACGGCCTCCTCCGCAGCGCA
GGCCGCCGCGGCGCCCTACGTCGTGCAGGCCGACGTGGTGGACCACCACGGCCGGAGGCTCCACGCCGCCAGCTTCCCGA
GATACCCTGGCATGGTGATGGCGCCGGAGCCCATGGCCGCCGCGCCCGAGGATGCGCTGGGGCTGGACCTGCAGCTCAGC
TTGTGACGACTCCGGTCGATCGAGAGCCGCGTACACTGTTGCTCCGGTAAAAAAAGGAAGGGATGAATTACCCACCCAC-
---TACTACTAGTACCTGCATGCGTCCGAACTAAAGCTCGATCGATCGATCCTCG----CTAGTACTACTAGGTAATTAA
ATTAGCTAGCGGTAGTAAGTAAAGTATAAGTAATTTTTAGCTTCCGGGCTAGCTTCGGAGTGTTAAGCCGGCCGCCCCCT
GCCTTGTAACCGAACCAAC---TCCCGTACGTTCCTGATATGATCCGAGATCGATCGATGACGTCTTGTAAATTCTTGGT
CAAATCCATTCACCCATCCATCCATCATCCCTCTCTGCCATTTGCAGTGTTGATCAATATCACCCATTTTCTTG------
TTGATGTGTTAATCACAATTAGTACGTCCATCCATCGACGAGGACGTGTGTTTGATTTGTCAAGGATGATCCGTTTATTT
AGCAAAAAAA---TTGTCAAGGCGAGTT-----------A-AAAAAATCGAGGATGTTCACATGCATGACAATTACGCAA
GTGTATTCTAAACGGGCATGCATACGCACATCCATTTATAATCAAGGCGGCAGGCACTTGGTGATAGGTGAGTGCACCAT
GAGTCAGTTCCCCTCTTGTTCCATTTCCATCATGCCACCTAATAAACTTTGTTTGCCCCCTTTTAATTATATCTGGGTTG
CCCTAATTGACAATCTCCTATTTCAGCATGCATGCATGGC-ACTACTACCAGTGCCGACCAATTAGCACCAGTAAC-AAT
CTCACTTCCTCTAGAATTAACCCAAGAGAGAAGGCCACTTTTGGTTGCAGTCGACAGTT---------ACCCGTATAGGC
CATACTACCAGCTACTGTAGTAGCTAGCAATCACACACATGTAC-TACACATGCAGGATTTACCTGCATATTTTACAGAC
GCGCATGCATATGCATCACGAGCGGGCGAGCGAGTACGTGTGGGTGTGGGCGTGGGCGCATGGGTTGATTGGACGCGGCA
CCGCACGCAAGGCGTTGAAGAGTGCACCACCAAAGCTA--------GCGTGCGTGCGTGCATGGGTGATCGAACAAACCT
TGTTCCGAGTGCATGCAAAAGGCGCCTGCGTGTGGCACACCGTGCCGCCCTCTGTGCCTGGTACTTCGCTCCAGGCCAAA
CCGGCCGTGCGATATCCACTGACCCCGCCACTGTTCGCCGTACCCTACGTGTCAACCCCACCCCACCCCAC--
>chr3A_1
CCACTACAGTTTAGAATGGCGCCCCTAGTACGTATTAGTTGGCCACTTAGTTCTGGTTATGGCTAGTGACACATCAGTG-
---TAAACAATATCTTATCTTAGCCAGATATAGGTATAGCTAGGTAGCTAGGTGTCGTATATAGTACTCTGATCATCTAG
CTA------GCTAGCT----GAATAAAAATGCTTTGATCGGCTAGCTATATATGTGCATATAATATATCTCGGCCGGAGT
CCTATCATGCGTGTG----TGTGTGTGTGTGTCGACGATCGTAATAAACCAAGCATGAGTCGCCCTGTCCAGTCCAGTCC
AGTCCAGGCGCGTAGTACGTGCATAAAAT------------AGTGCAAGTGCAAGATATGGAGCCCGGCCG-------AT
GCACAATCTAGAACTCAACAACGCTGTCTCTTGTGCTCCTGTTCACAACCACCACTGATCCCCTCTTCCCCCCTCT----
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---------------------CTCTCTCTCAC-----ACCTTCTCTCTCTATCTCTTCTAGCAGTGGTACTACTACTACT
GCTTTGCATCTGTACAGTCCTTCTCTCTCTAAAGTGCATGGGGGATATAAATAATGTTTTAGGAGAGGAGGGAGGAG---
--CCCCTGTAGATGCGT----GTGTATGTATTCAAATCATACATGCAGAGTTCTTTCACCTATATCCACTGGGAGGACTA
CTGTGCCTGCTTGC----GCCTCCGGCTCCAGGTGTTATATATACTGCCCCTGCCCACCTGACACAGCCACAGCCCATGC
ACATCCGGCTTTGACGGGCAGCAGC-ATCTCCATCTCCTCTCTTCTCCGT--------------CTCCTCTCTGCTCAAT
TCTCTCCTCCTCTAGTACGAGC----ATGACAAGCCCCAGGCTGAAGCTCTTCGGCTTCCACTTCTCCTCGGC---GGAG
GAGAACCACACCACCATGGACACGGCCGAGCACGAGGCGGCCGAGGCGGAGAAGGGCGGCTCCGACTCCTCCTCCTCGTC
TACCACCACGACCACGGCCACGGCGGCGGCTGCGGCGGGCGGCGGGGGCGGCGAGGGGCGGAGGTACGAGTGCCAGTACT
GCTGCCGCGAGTTCGCCAACTCGCAGGCGCTGGGCGGCCACCAGAACGCGCACAAGAAGGAGCGGCAGCAGCTCAAGCGC
GCGCAGCTGCAGGCGGCCGCGGCCGCCGCGGGACGCGCGGCCGGGGGAGGCGCGCTGTACCATCGGAG---CGGCGGCAT
GAACCCCATGGTGTCCGCCTTCGCGCAGCCGCCACACCTCCTCGGCGGCGCCGGCGACGGCGGGACGGGGCCCACCAGCT
GGGTCTACTTCTCCCCGCGCGCGGCCGCGGTGGCCGGGGGCGCCCAGGGCCAGCAGTTCCACGTCTCCCACGGCTGCGTC
TTCCCCTCCGGCCGCGCCACCCCGGCCTCCGCCTCGCCGGCCGTGTTCTCCTACGCGCCGACGGCCTCCTCCGCGGCCCA
GGCCGCCGCGGCGCCCTACGTCGTGCAGGCCGACGTGGTGGACCACCACGGCCGGAGGCTCCACGCCGCCAGCTTCCCGA
GATACCCCGGCATGGTGATGGCGCCGGAGCCGATGGCCGCGGCGCCCGAGGACGCGCTGGGGCTGGACCTGCAGCTCAGC
TTGTGACGACTCCGGTCGATCGAGAGCCGCGTACACTGTTGCTCCGGT-AAAAAAGGAAGGGATGAATTACCCACCCACG
CACTACCACTAGTACCTGCATGCGTCCGAACCAAAGCTCGATTGATCGATCC----TCGCTAGTACTACTAGGTAATTAA
ACTAGCTAGCGGTAGTAAGTAAAGTATAAGTAATTTTTAGCTTCCGGGCTAGCTTTGGAGTGTTAAGCCGGCCGACC---
GCCTTGTAACCGAACCAACTCCTCCCGTACGTTCTTGATATGATCCGAGGTCGATCGATGACGCCTTGTAAATTCTTGGT
CAAACCCATGCACCCATCCATCATCCA----TCTCTGCCATTTGCAGTGTTGATCAATATCACCCATTTTCTTGTTCTTG
TTGATGTGTTAATCGCAATCGGTACG----TCCATCGACGAGGACATGTGTTTGATTTGTGAAG---GATCCATTTATTT
AGCAAAAAAAAAATTGTGAAGGAGAGTTCAAACAACCAAA-AAACAATCAAGGATGTTCACATGCATGACAATTACGCAA
GTGTATTCTAAACGGGCATGCATATGCACATCCATTTATAATCAAGGCGGCAGGCACTTGGTGATAGGTGAGTGCACCAT
GAGTCAGTTCCCCGCTTGTTCCATTTCCATCATGTCACCTAATAAACTTTGTTTGCCCCCTTTTAATTATGTCT-GGTTG
CCCTAATTGACAATCTCCTATTTCAGCATGCATGGCACACTACTACTACTAGTGCTGACCAATTAGCACCAGTAAC-AAT
CTTACTTGCTCTAGAATTAACCCAGGAGA--AGGCCACTTTTGGCTGCAGTCGACAGTT---------ACCCATATAGGC
CGGCCATAACTACTCACCATCAGCTAGCAGGCACACACGTACATGTACACATGCAATATTTACCTGCATATTTTACGGAT
A------CACATGCATCACGAGCGGGCGAGCGAGTACGTGTGGG------CGTGGGCGCATGGGT-GATTGGACGCGACA
CCGCACGCAAGGCGTTGAAGAGTGCACCACCAAAGCTAGCGTGCGTGCGTGCGTGCGTGCATGGGTGATGGAACAAACCT
TGTTCCGAGTGCATGCAAAAGGCGCCTGCGTGTGGCGCACCGTGCAGCGCCT-----------CTTCGCTCCCGGCCAAA
CCGGCCGTGCGATATCCACTGACCCCGCCACTGCTCACCGCACCCTGCGTGTCAACCCCAC------------
>SNPs
----------S---------------------------------------------------------------------
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---SSSSSS-----------------S----S---------------------------------------------S--
---------------SSSS--------------------S----------------------------------------
-----------------------------------------------------------------------SSSSSSS--
--S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-----------SSSSS--------------------------------S-----S----
------------S-------------------------S------------SS-SSS--------------------SSS
SS---------------SSSS-----------------------------------------------------------
------S-------------------------------------------------------------------------
-----------------------S-S-----S-----S---------S-----------S---------------S----
----------SS----------SSSS-----------------------------------------------SSS----
------------------------S-------------------------------------------------------
------------------------------------------------------S---S--S------------------
-------------------------------S------------------------------------------------
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---------------------------------S------------------------------S---------------
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---------------S----------------------------------------------------------------
---------------------------------------S----------------------------------------
----------------------------------------------------------------S--------------S
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--------------------------------------------S----------S---S---S----------------
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-------------------------------------------------------------------S-------S----
------------S---------SS--SS----------------------------------------------SS----
----------S---------------------------------------------------------------------
-----------------------------------S----S-----S---------------------------------
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----------------S-S--------------------------------------------------S---S------
-------------------S--S--SS------------------------------------------S------S---
---------------------------------------------------S-------SSSSSSSSS------------
------SS------SS---SSSSSSSSSSSS----------------------------------S--------------
----------------------S-------S------------SS-----------------------------------
------------------------------------S-------------------S--SS-------------------
--------------------------------------------------------S--S--------------------
----------------------S--------------------------------------S---------SS
>forward_256
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----------------------------------------------------------------------------GGGT
CCTATCATGCGTGTGT----------------------------------------------------------------
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>reverse_1342
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-------------------------------------------------------------CGGTACGAGTGCCAGTACT
G-------------------------------------------------------------------------------
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>forward_879
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-----------------------------------------------------------TAGGAGAGGAGGGAGGAGGA-
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>reverse_2577
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----------------CGCTCCATTTCCATCATGCC--------------------------------------------
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