>input_sequence_62036
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--------------------------------------------------------------------------CGCGCT
CATTTCTCCTCAAACAACCAATC-AATCCAAGTCCAAGGCGAATCAAATCTCCGGCGAGAATGCTGCAGGCGGTGGTCTC
CAACCCGCAACCCGTCGCCGCGTCC------CTGGGGGCTCCTTGCCGCCCTGGGCGAGGCTCGGTGAGGGTCCGGTCCA
CCAGGAACGGATCCGCCGATAACCTTGACCATCTGCGGAGGCCCCCGACGGCGACGGCTAGACAGCCGCGGCAGGGGAAT
GGGAATCCTGCTCCGAGGAGGAGGGTCATCCAAACCACGCCATTTGGTAAGAGCTCCCGGAGTGCCATGCCATGCATT-C
TTGATGATTTTTCGCCGAAAATCTGGT-------CGAATGGCTTAATCATGTTCTTGGTGATTGAATTCTTGGAT-----
-------TGGCAGGGCTATGGGACAGCTTCCCGGACGCGCGAACCCTGGACCAGATGATGCGCACCATGGAGCGCATCAT
GGACGAGGCCGACGACGACGACGGCCGTCGCCCTTTCGTGGTGCCGGGCGCGACGGTGCCGCCCA---CGGCACGGCGCG
CGGACGAC---------------CGACGCGGGCGGACACCGTGGGAGATCAAGGAGCGGGCGGGGGACTACCTGGTCCGG
TTCGACATGCCGGGCATGACGCGGGAGGACGTGCGCGTGAGCGTGCAGGACCGGACGCTGGTGGTGGTCGCCGAGAAGGC
GGCGAAGCCAGGGGAGGCGGACGGGGAGAAGGATAAGGATAACGAGGAGGATGGGGAAGAGGAGGAGGCGTGGCCGGCGG
CGAGCTACGGGCGGTACAGGACGCGGGTGGAGCTGCCGGAGAACTTGGAGGTGGAGAGGATCGCCGCGGAGGTGAGGGAC
GGCGTGCTCTACCTCAACATCCCCAAGGTGTCGCCGTCCGGGGGCAAAGTCGTCAGCATCCAGGTGCAGTGATGGATATG
GATAAGGCTAACCGGTAGCTCAGAATGTATTTTGAG-TTTTGGACTCGGGCCAGTGAAGAACGGAACGACATTACTTCCG
TTCAGATTGTCGAGTC----------------------------------------------------------------
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-------------------------------------------------CACAATTTATATACCGGAAA----AATGAAT
AGTTGGCTATCTG-------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G257000
GAAAAAAAGAAACAAAAAAACAAAAGATAAAAAGAAAACAAAAAAAAACCAGGAAAAAAGACCCCCCAAAATTACCTGAA
AGCACAGTTCTATCTTTTTCTGGGAAGCACATACTTGCTTTTTCTTTTTTCAGGAAGCATAACTATATTTTTCCTTTTCA
AGAAGCACGACTGTGCTTCTCTGGAAGCACAATTGTACTTCTACATATTTCTGGGGAGCATAACTGTACTTTTCTCTTTT
GAGAAGCATAGGTTGAGGTTTTCATAGAAGCACAGGATATTCCTTTTTGAAGCAGAGCCTTTTTCTTTCTTTCTTTCTTT
ATGAAGCACAACTATGCTTTTTTTCTTCTCTTTTTTGAAAGCACATATGTGTTTCATGAAAGAAAAAACACACCGTTTCC
AATAAATACTAGCTCTGTAAAGAAATATAGGAGCCTTTAATCACTACGTTGGTGCTCTAAACGCTCTTATATTTCTTTAT
GGAGGGAGTATAAT--TTTAAAAATTCTGCCAAAATCTGTAGAAAGACAACCCCCAGAAACAA-GTGCAAAAAAAAACTT
GGAATCCCGCTGGTGCACCCAACACGATGACAAGTGAGGGCGGATGGGCGCATCATTCGGCATCCCCGCACGCCTGATAC
CATTGTTTGCCTTGTATTCCGCTTCCATTTTGGTTGCATTTTGAAATCTAAAAATAATAATTAAGGGGTTGAAATCTAGC
AAGTGATATTCGAAATGTTTGATGGGCTAT------------------ATCTCTCAAAGTCCATGGGCTTATGCAATACA
GATCC---AATGC-AAAATCCGTGGTCCAGCGTACGCGTCCTGAAAGTTCTGGAACCTGTTCTGAAAACCAAAAACAAAA
-CCTGAAGATTGAAAAAGATAGGTCTGGAACCTCAAACCTTTCTCTAGAAACCACTCCATCCTTCT----CATGATCCCT
GTGCTGCGTCCGCCAAATCTCTCCTCCCCCCT----CTCTATAAAAAACACAGGGCAGCATTGCGTTGTACAGTCGCGCT
CATTTCTCCTCAAACAACCAATC-AATCCAAGTCCAAGGCGAATCAAATCTCCGGCGAGAATGCTGCAGGCGGTGGTCTC
CAACCCGCAACCCGTCGCCGCGTCC------CTGGGGGCTCCTTGCCGCCCTGGGCGAGGCTCGGTGAGGGTCCGGTCCA
CCAGGAACGGATCCGCCGATAACCTTGACCATCTGCGGAGGCCCCCGACGGCGACGGCTAGACAGCCGCGGCAGGGGAAT
GGGAATCCTGCTCCGAGGAGGAGGGTCATCCAAACCACGCCATTTGGTAAGAGCTCCCGGAGTGCCATGCCATGCATT-C
TTGATGATTTTTCGCCGAAAATCTGGT-------CGAATGGCTTAATCATGTTCTTGGTGATTGAATTCTTGGAT-----
-------TGGCAGGGCTATGGGACAGCTTCCCGGACGCGCGAACCCTGGACCAGATGATGCGCACCATGGAGCGCATCAT
GGACGAGGCCGACGACGACGACGGCCGTCGCCCTTTCGTGGTGCCGGGCGCGACGGTGCCGCCCA---CGGCACGGCGCG
CGGACGAC---------------CGACGCGGGCGGACACCGTGGGAGATCAAGGAGCGGGCGGGGGACTACCTGGTCCGG
TTCGACATGCCGGGCATGACGCGGGAGGACGTGCGCGTGAGCGTGCAGGACCGGACGCTGGTGGTGGTCGCCGAGAAGGC
GGCGAAGCCAGGGGAGGCGGACGGGGAGAAGGATAAGGATAACGAGGAGGATGGGGAAGAGGAGGAGGCGTGGCCGGCGG
CGAGCTACGGGCGGTACAGGACGCGGGTGGAGCTGCCGGAGAACTTGGAGGTGGAGAGGATCGCCGCGGAGGTGAGGGAC
GGCGTGCTCTACCTCAACATCCCCAAGGTGTCGCCGTCCGGGGGCAAAGTCGTCAGCATCCAGGTGCAGTGATGGATATG
GATAAGGCTAACCGGTAGCTCAGAATGTATTTTGAG-TTTTGGACTCGGGCCAGTGAAGAACGGAACGACATTACTTCCG
TTCAGATTGTCGAGTC----------------------------------------------------------------
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-------------------------------------------------CACAATTTATATACCGGAAA----AATGAAT
AGTTGGCTATCTGTCCTTGTCGTTGGTCCGCATCCTCTCCCACATAATCACTCCTGCACGTACCAAGAGGAACATACGCA
AAGACAACAAAACCTTGAATTCCATTGGAT--------------------------------------------------
--GTGTTTTTTTAGATATGCGTCCTCGTTGCAACATGTTTTTAACGTTGTTGCATAC----CGAGGTGGATTGAAAAGGC
GGCGGCTGCGAATTGAACGGGATGATTTCACAATCGCAGCAACACCACGCT------------GAGCACGACGAAGCTCC
ATTGCAGCTCTCATGGTGCACCGTGCAGCGCGACAAAAGCTCTACAAGCCTGCAACGCAGTATCGATGGCCGTCCAAAGA
AGCTCCCTTAGCAGCCAGCGTGTGGGCTATGCTTCAGTTTGAAATATTGGGCGTAGAGTATATAGTGAGTTTTCTACACC
ACACTCGAGGCGTCTGGGTTCTTTACACCACACTTGAGGCGTCTGGGTTCTCTACACACACTTAGGGTGCGTTTGGTTGT
AAGGGCGGTCATGAATGGGTTGGGATCGTTCAGAAAATAGACATGTTTGGTTATAAAGCACATGAATGGTTCGAGCCAAA
AAAAAGAATATGCCATGAAGATGCTGAACCGTTCCACCCAACCAAATCGGTCGAATCAAATGGCCATCCTTTGCATGCAT
GACTATGTGAGCATGACTGGTGGTCCCGTCCTAAATAATTAGCTCATCACGTATATTCAGCCAAACACATGAATTGAATG
GTTCAATCCCAAAAAATTTAAACGGTCCCAACTCATTCATACGACACCTTCAACCAAACGCATCCAGTGAGGTGTAAAGG
AGAGCCTGGCAGGGACCGGGGCGGCCGCGTGCAACATATATATGCGTGAATGCCCCCGAATATCCACACCCTCACATTTC
TTTTTGACAAAAAATCTAAAGTCAGTCTCGCTCCCATCGATACACATCTATCCGGACTCATCGAGATACACTTGACATAG
CCACTGGCTAACCCATCGAGAAGGCACTCGGTCCCACCAAA
>chr5A_445
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--------------------------------------------TACGTTAGTGCACTAAACGCCTTTATATTTTTTTAT
GGAGGGAGCATATTTCTTAAAAAATTCTGCCAAAGTCT--AGAAAGACAAAAGAACAAATACACGTGCAAAAAAAAAAAA
GGAATCCTGCTGGTGCGTCCAACGCG-TGACAAGTGACGACAGATGGGCGCATCATGCAGCGCCCCCGCACGCCTGATGC
CATTGTTTGCCTTGTATTCGGCTTCCGTTTTGGTTGCATTTTGAAATATAACAAATGGGG--------------------
-------ATCCGAAATGTTTGATGGGATGTACGTGTTGTTTTACCCGGATCTCTCGAAGCCCATGGGCCTATGCAATACA
AATCC---GATGCAAAAATCCGTGGTCCAGCGTACGCGTCCTGAAAGTTCTGGAACCTGCTCTGAAAACC---------A
ACCCAAAGATGGAAAAAGATAGTTCTGGAACCCCAAACCTTTCTCTAGAAACCACTCCATCCTTCCTTCCCATGATCCCT
GTGCTGCGTCCGCCATATCTCTGCTCCTCACTTGTACTATATAAAATACACAGGGCAGCATTGCGCTCTACAGTCGCGCT
CATTTCTCATCAAGCAACCAATTTAATCCAAGTCCAAGGCAAATCAAGTCTCCGGCGAGAATGCTGCAGGCGGTGGTCTC
CAACCCGCAACCCGTCGCCGCGTCCCTGGGGCTGGGGACTCCTTGCCACCCTGGGCGAGGCTCGGTGAGGGTCCGCTCCA
CTAGGAACGGATCCGCCGATAACCTTGACCACCTGCGTAGGCCCCCGACGGCAACTGCTAGGCAGCCGCGGCAGGGGAAT
GGGAATCCTGCTCCGAGGAGGAGGGTCATCCAAACCTCGCCATTTGGTAAGAGCTCCCGGAGT-------------TT-C
TTGATGATTTTCCACCCACAATCTGGA-------CGAATGGTGGCA-------------AATTCAATTCTCGGCTTGGCC
GCTTGACTGGCAGGGCTATGGGACAGCTTCCCGGACGCGCGAACCCTGGACCAGATGATGCGCACCATGGAGCGCATCAT
GGACGAGGCCGACGACGACGACGGCCGTCGCCCCTTCGTGGTGCCTGGCGCGACGGTGCCGCCCACGGCGGCACGGCGCG
CGGACGAC---------------CGACGCGGGCGGACGCCGTGGGAGATCAAGGAGCGCGCGGGGGACTACCTGGTGCGG
TTCGACATGCCGGGCATGACGAGGGAGGACGTGCGCGTGAGTGTGCAGGACCGGACGCTGGTGGTGGTCGCCGAGAAGGC
GGCGAAGCAAAGGGAGGCGGTCGGAGAGAAGGATAAGGATAACGAGGAGGATGGGGAGGAGGAGGAGGCGTGGCCGGCGG
CGAGCTACGGGCGGTACAGGACGCGGGTGGAGCTGCCGGAGAACGTGGAGGTGGAGAGGATCGCCGCGGTGGTGAGGGAC
GGCGTGCTCTACCTCAGCATCCCCAAGGTGTCGCCGTCCGGGGGCAAAGTCGTGAGCATCCAGGTGCAGTGATGGATGTG
GATAAGGCTAGCCGGTAGCTCAGATTGTATTTTGAG-TT-TGGACTCGAGCCAGTGAAGAACGGACTGACATTACTTCTG
TTCAATATTATTGAGTCCACAATTTTTTTTCCAAGAAAACTTTCCACCTTTACATCTTCATACAATGAACATCGTAAATA
ATAAAAATTGCATCTATTCATAGACCACATAGTGACGACAAGAATTGAAGCGCAACGAAGGCCCGCCACCGTCATTGTCC
CTTCTTTGTTGGAGTCGGTTAAAGCTTGTTGTAGTAGACAGTGTTAAGGACCCATTAGACCATTGCAGCAAAACAACAAT
CGTCGACAATCGCAGCAGAACAGCAACCGTCGTTTATGAAGAGTAGCGTAGATTAAAAAGATTCAATTTGAAAGATTCAA
TCTGAAAGTAAACAAACTACGCTCAGATCCGTGAAAATCCACCAAGAATAGAACCATCGGAAACGAGGCGGACAAATGAC
GGCGGCTGCGAAAGATAAAGGAATCCTAGACTTTTATTATTATTGGTTCCATAATTTATATACCAGCAGAATGAATGATT
AGTTGGATATCTTCTCTGGTTGTTGGCT-GCATCCTCTGGCACAAAGTCACTCCTGCACATACCAAGAAGAACATACA-A
AAAGCAACAAAACCTTAAGTTCCATTGGATACATACCAAAAAGAACATACGAAAAGCAACAAAACCTTGAGTTTCATTGG
ACGTGCTTTTTAAGAGATGCATCCTCGTTGCAACATACTTG---CGCTGTTGCATACCGATCGAGGTGAATTGAAAAGGT
GGTGGCTCCGAATT-AACCGGATGATTTCACGATTGCAGCAATGCGCCGTAGCCCGTAGCATTGAGCGTGGCGAAGCTTC
ATTGCAGCTCTCATGGTGCACCGTGCAGCGCGACAAAAG--CTGCAAGCCTGCAACGCAGCAACGATTGC-GTCCAACGA
AGCTCCATTTGT----AGCGTGTGGGCTATACTTTTGTTAGAAATATTGGGC----------------------------
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>chr5D_748
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------------------------------------------------ATCTCTCGAAGCCCATGGGCCTACGCAATACA
AATCCACCAATGC-AATATCCGTTGTCCAGCGTACGCGTCCTGAAAGTTCTGGAACTTGTTCTGAAAGCCAAAAACAAAA
ACCTAAAGATGGAAAAAGATAGTTCTGGAACCCCAAAACATTCTCTAGAAACCACTCCATCCTTCC----CATGATCCTT
---CTGTCTCCGCCATATCTCTGCTCCCCCTG-----TATATAAAACGCACAGGGCACCATTGCGTTCTACAGTCGCGCT
CATTTCTCATCAAACAACTAATC-AATCCAAGTCCAAGGCAAATCAAATCTCCGGCGAGAATGCTGCAGGCGGTGGTCTC
CAACCCGCAACCCGTCGCCGCGTCC------CTGGGGGCTCCTTGCCGCCCCGGGCGAGGCTCGGTGAGGGTCCGGTCCA
CCAGGAACGGATCCGCCGATAACCTTGACCATCTGCGGAGGCCCCCGACGGCGACGGCTAGACAGCCGCGGCAGGGGAAC
GGGAGTCCTGCTCCGAGGAGGAGGGTCATCCAGACCACGCCATTCGGTAAGAGCTCCCGGAGTGCCACGCCATGCATTTC
TTGATGATTTTTCGGCGACAGTCTGGAGTCTGGACGAATGGCTTAATCATGTTCTTGGTAATTGAATTCTTGGA------
-------TGGCAGGGCTATGGGACAGCTTCCCGGACGCGCGAACCCTGGACCAGATGATGCGCACCATGGAGCGCATCAT
GGACGAAGCCGATGACGACGACGGCCGTCGCCCTTTCGTGGTGCCGGCCG---------CGCCCA---CGGCACGGCGCG
CGGACGACACGGCCGCTGGCTACCGACGGGGGCGGACGCCGTGGGAGATCAAGGAGCGGGCGGGGGACTACCTGGTGCGG
TTCGACATGCCGGGCATGACGAGGGAGGACGTGCGCGTGAGCGTGCAGGACCGGACGCTGGTGGTGGTCGCCGAGAAGGC
GACGAAGCAAGGTGAGGCGGACGGAGAGAAGGATAAGGATAACGAGGAGGA---GGAGGAAGAGGAGGCGTGGCCGGCGG
CGAGCTACGGGCGGTACAGGACGCGGGTGGAGCTGCCGGAGAACGTGGAGGTGGAGAGGATCGCGGCGGAGGTGAGGGAC
GGCGTGCTCTACCTCAACATCCCCAAGGTGTCGCCGTCCGGGGGCAAAGTCTTGAGCATCCAGGTGCAGTGATGGATATG
GATAAGGCTAGCCGGTAGCTCAGAATGTATTTTGAGTTT-TGGACTCGAGCCAGTGAAGAACGGACTGACATTACTTCCG
TTCAGATTGTCGAGTC----------------------------------------------------------------
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-----------------------------------------------TCCACAATTTATATACCGGCAA----AATGATT
AGTTGGATATCTTTCCCTGTCGTTGGTCCGCATCCTCTCCCACATAATCCCTCCTGCACGTACCAAGAAGAACATACGCA
AAGACAACAAAACCGTGAATTCCATTGGAT--------------------------------------------------
--GTGTTTTTTTAGAGATGCATCCTCGTTGCAACATATTTTTAACGTTGTTGCATACT----GAGGTGGATTGAAAAGGC
GGCGGCTACAAATC-AACCGGATGATTTCACGATCGCAGCAACGCCACGCA------------GAGCACGGCGAAGCTCC
ATTGCAGCTTTCATGGTGCATCGTGCAGCGCTACAAATG--CTGCAAGCCTGCAA-------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----S--------SS--------S-----
--------S---S-----S---------------S---SS----------SSSSSSS--SSS---------------SSS
-------S--------SS-----S--S----------S-S-S--------------S-S--SS---------------S-
-------------------S------S--------------------S---S--SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--S----------------S-S--------------------------S---S--------S-----------
S-------------------------------------------------------------------------------
----S-----S-----------S---------S--------------------------------S--------------
---------------S------S---------------S-------S--------------------S------------
--------S-------------------------------S---------------------------------------
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-------------------------------------------------------------------S------------
------------------S-------S--------------------------------S--------------------
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-------------------------------------S--------------------------------------S---
---------------------S----------------------------------------------------------
--------S---------------S--------------------------------S----------------------
--------------------------------------------S-----------------------------------
-----------------------------------------------------S--------------------------
----------S----------------------------S--------S----------------SS-------------
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------------------------------------------------------------------S-----------S-
------S-----S-------------------------------------------------------S-----------
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---------------S----S---------------S-------------------------------------------
-------S------S---S------------S-----------S------S-------------------S---------
---------------------------------------SS--S----------------S-S----S--S------S--
------S--S-SSSSS--------------S---SS---S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_185
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-----CACGACTGTGCTTCTCTGGA-------------------------------------------------------
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>reverse_2736
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---------------TATGCGTCCTCGTTGCAACA---------------------------------------------
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