>input_sequence_62016
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----------------------------------------ATGCATCGTCGGTTTTTGAATGTGATAGTACAGGACTTGA
GCACTCGCATCAATTCGTTGTACCTCGTCGACCTTTGGAAGCATCTCTTCTGCCGGTCAACAGGAAAAGCAGAAGCTGCA
GAAGATGCAAAACTGGAGAAGAAAAATCCAGCAGCGTTGATAGATCCCTTGAAGTTGCATAAGCCGCAACTCAGGTTTGG
ATCATTTCTCCTCTCTGCTCTGTTGACAGAGAACTGCCTCCTGCTGGCAGACTCTACTCACAGTGCATTTCTCTACGACA
ACGACTTAAACTCGGTCCAACCCATTCAATCTATGAATTTTCCCAAAGGACCTAATTGCGTCTGCTTCTCTGCACCCCAA
GCTAACCCCTTAGACTCTCACCGCTACTATATACTGGACCTGTCACCGGCCTCCACTATCAATTCTCCCTTTAGGGTCCT
CAGCTACCGCTCTAATAGTTTCTCCTCCGAATCCCATGTAAAATCTAACTACACCAATTCATTCTACTGGGATACTCTCC
CAGTACCACCATTTCTAGGCGATGACTATGGAAGAACCATTGACATTTGTTCCTCCATGATGATCAATGGCTCGACCATA
TGCATATCCTCTGTCGAGAAGGGCGTTGGCACCTACACCTTTGATATAGTGACAAAGTTATGGACTCAGGCTGGCAATTG
GGTGCTGCCCTTCTACGGCAAAGCAGAGTATGTTCCCGAGCTCAACCTTTCGTTCGCTCTATCTGCTGACAGCCCCCACC
GCTTGTGCGCTTTAACCTGCACTTCAATGCACCATGGGGGCCCACCA------GCATTGCAGCATACTTTTGATGAGCTC
GACCTGCCGGAG---AATTGGTCGCCATACAAGTGCCACCT-GGTTAACCTGGGCTCAGGCAACTTTTGCATCATTTCCT
TCTGTAAGACCATGAACTGTGAGTTTGCCGTCTTCACCGGCGTGGAGGTGAAACCCTGCATCAATGGCGACGGTCCTCTC
CGGATGATCAAGCACCTGTCTAAGAGTTTCAGCCTTGGATCTCATAGCATCAAAAGTGTGCTCTGA--------------
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>chr1D_1_TraesCS1D01G169200
TAAACTCATTAGATTCGAATAATCAGATCTGCGAGGACAGGAAACTCTTTGCCCTCATGAAATTGTCAAAATAACAAGAG
AAAATTTATTCTCACAAAACTATGATAATCACTAGACGTTGACGAAGAATATAGTCTGAAGATCCGAGATCCCCCAACCT
TTCAGCGTCAAGATGACAGCCGGAGACAAGGGAGCCTAAATTTCTTAGATGATGAAGGCGATAGCGGCATGAGAAACCCT
TCTGAAACTTTCTCTCGTGGACCTACTCGAAGATAGGATAGTGAAAGTGAGATGTGCAAGGAAGTGATTTCGGAACCGGT
GCCTAAAGCGCTAAATAGGAATCTGGTTTAAATGGGCCTGCGCATTAGGAACGAGCAGGTCCATCTTGAGCCCTAAATAG
GCTTTTGCGTCTCACCCAGGTCTTTCTATATAGCCGTCAGCCCGGTCCGAGGTCTACAACAATTTATTTATAAATCCGGG
ACATTATGGTTTGCCCTAGATTCCACCGAAGCCCGGTGCCTCCGCGTCTCCGCCGCCATCTTCTACCAGACTTCTCCTAG
TTAGTCCGGCCAGCCGCTCCCTCACAGCCCAAGCGGAGACGACAATATTTACCGCTTTCTTTCTGCCCATGTGTGCCTAA
TCCAGCTGGTCGTGCTCGCCGCTCCATTACCGTCTCGAAGCGAAGCCGACTAGATCTGTAGATCAGCAGATCCAGGTATT
GTTTGAAAAGAGATTCCATCCGTTTTGGTTTGTAAGATCTTCGTGATTTGCATTTTTTTGACGGTGCACCTGTTGCCAGG
GGATATAGCAGGTAATCGGCGTTCGGACGGAGGAACCGCAGGTATATAGGATTTTGCTGCTGGTATGACAAAATTTTAAG
ACCCATCTTTGTGCATTTCTTTTTTAATCTTCAGCAATTTGGATATCTCAGTCTCGATGTTTTCTTTTTAGTCAGGCCAT
CTCTCAGAAGATTCGATTATTCAATTTGGACTTGGAGAGGATGCATCGTCGGTTTTTGAATGTGATAGTACAGGACTTGA
GCACTCGCATCAATTCGTTGTACCTCGTCGACCTTTGGAAGCATCTCTTCTGCCGGTCAACAGGAAAAGCAGAAGCTGCA
GAAGATGCAAAACTGGAGAAGAAAAATCCAGCAGCGTTGATAGATCCCTTGAAGTTGCATAAGCCGCAACTCAGGTTTGG
ATCATTTCTCCTCTCTGCTCTGTTGACAGAGAACTGCCTCCTGCTGGCAGACTCTACTCACAGTGCATTTCTCTACGACA
ACGACTTAAACTCGGTCCAACCCATTCAATCTATGAATTTTCCCAAAGGACCTAATTGCGTCTGCTTCTCTGCACCCCAA
GCTAACCCCTTAGACTCTCACCGCTACTATATACTGGACCTGTCACCGGCCTCCACTATCAATTCTCCCTTTAGGGTCCT
CAGCTACCGCTCTAATAGTTTCTCCTCCGAATCCCATGTAAAATCTAACTACACCAATTCATTCTACTGGGATACTCTCC
CAGTACCACCATTTCTAGGCGATGACTATGGAAGAACCATTGACATTTGTTCCTCCATGATGATCAATGGCTCGACCATA
TGCATATCCTCTGTCGAGAAGGGCGTTGGCACCTACACCTTTGATATAGTGACAAAGTTATGGACTCAGGCTGGCAATTG
GGTGCTGCCCTTCTACGGCAAAGCAGAGTATGTTCCCGAGCTCAACCTTTCGTTCGCTCTATCTGCTGACAGCCCCCACC
GCTTGTGCGCTTTAACCTGCACTTCAATGCACCATGGGGGCCCACCA------GCATTGCAGCATACTTTTGATGAGCTC
GACCTGCCGGAG---AATTGGTCGCCATACAAGTGCCACCT-GGTTAACCTGGGCTCAGGCAACTTTTGCATCATTTCCT
TCTGTAAGACCATGAACTGTGAGTTTGCCGTCTTCACCGGCGTGGAGGTGAAACCCTGCATCAATGGCGACGGTCCTCTC
CGGATGATCAAGCACCTGTCTAAGAGTTTCAGCCTTGGATCTCATAGCATCAAAAGTGTGCTCTGAACCATCTAA-----
TTGATTGCCTGGATGCCGATATGGAACTTAGTCTGTAATCTGTGCTATTTTGTTTTCTGCCTCTTAGCTGTTCTAAAGCC
CGCTGCTGTTTATCGGTCTTGATATGCTGCATTTAATCCGACAGCGCATGACTATGTAAAGACTATTTGCTTAAATGATT
TTTAAACTTGCTTAAGTTCATTGACAGTCCGTCTATCTATCACTGTATCTTTGGATCTTTGGTTAATTGCAAAGAGATTG
TTTGCAGATCATAAAAGCATTTACAAGTATCAAGTGAAAACGCCCGTTCAATGTAAACTGAAAAGTATTGATTTGCAGAA
CGTACGGTGCGGACCAAAGGTGAACCCCAGTTTTGCAGCTAACCCCTTGCCCTTTACGTCCTTGCTTGGTAACGATTCAT
AAAAAAAGGTAAAATGAATCGTGCTCAATCTGTGACGCCATGGAGTCCTAAGCCAATCGCCATGTGCCCTAGCTCTCCGA
CGGCTGCCCTGTCCAGCAGCTCTAGCCCTCCGCCTGCCCTGATTCCGCACCCTCCTCCAGCGACGGCTGTGATCCCCTGC
CCCCTGCCGACCATGGACGGAGTTAATTGCACAGAAGTATCACAATTGGGGCATCACATGCAGATTGGTATCACGATTGC
TAATTTTTGCATGTCAGTACCATGATTGCTCCAAATTTTTTCAAATAAGGCTAAAACGCGTATTTATACGTATTGACGCT
CGATCCGACAGCTCGGGCCCACCCGTCAGGTGCCACGCTGGCCAATCGGCGCGTGCCCGCGCGCTGACTAGGATGAGCCG
GTGCGCTGCTGCTCTCCAACCCGGTCCGGTCGCACCAGCTCGCCCCCGCCGCACCATTCCCCTCCCCTCCTCCTCTCCTA
ACTCGTTTCCTCCGTCGCCGCCGCCTGCGTCCCGGCTGCCGCACCGCCCCGCCGACGCCATGGTTTTGGAGGACGAAAGC
AGCGACGACCTGTCTAGCCTCCCGTACATGC
>chr1D_1558
CATCGACACG----------------------------------------------------------------------
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-----------------------------------------------TGTTCCTCCATGATCGTCGATGGCACGACCATA
TGCATATCCTTC------GACGGCGTCGGCACCTACGCCTTCGACACGGCGACGGGGGTATGGACTCGTGCCGGCGACTG
GGCGCTGCCCTTCCACGGCAGAGCGGAGCATGTTCCCGAGCTGGGCCTCTCTTTCGCTCTATCGGCTGACAGCCCCCACC
GCCTGTGTGCTCTGGACTGCACTACGATGCGCTCTGCCCATGGCGGGCCGCTTGCATTGCGGCATACTTTTGATCGTCTC
GACCTGCCGGAGGAGAAGTGGTCACCGTACAAGCGCCAACT-GGTGAGCCTGGGCGCAGGCAGCTTTTGCATCGTTTCCT
TCTGTAAGGCCATGAAGCGCGAGTTCGTCGTCCTCACCGGCGTGGAGGTGAAGCCCTGCAACAATGGTGATGGCCCTCTC
CGGATGATCAAGCACCTGTCTAAACGCTGCAGCCTTGGGTCTCATAGGATCAACTGTGTGTTTTGACCGAACCGTTTAAG
TTGGTTGCCTGGAGGCTGAATGG---------------------------------------------------------
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>chr1B_1558
CATCGACACG----------------------------------------------------------------------
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-----------------------------------------------TGTTCCTCCATGATCGTCGACGGCACGACCATA
TGCATATCCTTC------AACGGCGTCGGCACCTACGCCTTCGACACGGCGACTGAGGAATGTACTCATGCCGGCGACTG
G--GCTGCCCTTCCACGGGAGAGCGGAGTATGTTCCCGAGCTCGGCCTCTCTTTCGCGCTGTCTGCTGACAGCCCCCACC
GCATGTGTGCTCTGGACTGCGATGCCATGCGCTCTGCCCGTGCCGGGCCGCTGGCATTGCGGCATACTTTTGATCGTCTC
AACGTGCCGGAGGAGAAGTGGTCGCCGTACAAGCGCCACCTGGGTGAGCCTGGGCGCGGGTAGCTTCTGCGTCGTTTCCT
TCTGTAAGGCCATGGGGCGCGAGTTCGTCGTCCTCACCGGCGTGGAGGTGAAGCCCTGCAACAATGGTGATGGCCCTCTC
CGGATGATCAAGCACCTGTCTAAGCACTGCAGCCTTGGGTCTCATAGGATCAACTGTGTGCTTTGACCCA----------
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>SNPs
S-SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------SS--S-----S--------
----------SSSSSSSS--S-----S---------S----S--S-SS-S---SS--S----------S--S---S-S--
--S----------S------S---S------------------SS---S--S----------------------------
--S----S---S-SSS-------S-S----S-SS--SSS-SS-SSSS-------------S-------------SSS---
-----------------S--------S------S-----------S-S-------S------S----------S------
--------S-------SS-S-----S-S----S-------------------S-------S------S--S--S------
------------------------S-S-S---------S--------S-----SS-------S---S---S-SSS-----
---S---------S--S--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_42
----------------------TCAGATCTGCGAGGACAGGA--------------------------------------
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>reverse_1239
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--------------------------------------TCCTGCTGGCAGACTCTACT----------------------
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>forward_650
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----------------------------------------------------------------------GTGTGCCTAA
TCCAGCTGGT----------------------------------------------------------------------
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>reverse_2528
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-----------------------------------------------CTAAGCCAATCGCCATGTGC-------------
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