>input_sequence_61996
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------------------------------------------------------------------------ACGCACCG
CTTTTTGTACTACTCTTTTCTCTCCCATCCTGTGCGCCCTTCGCGTTTCGCGCCCAGAGTGCTCTTTGTTCACGTTCACG
TTCACGTTCACGTCCGTTGCCTTGCACCCACCCACCCCTCGACAGGAAACAAGAAAGAGAAGGCAGAAAAAA-AGCTCGT
CTGCCGGACATGGAGAGCTCCTCCTCGTC---TCTGTTGCTG---AGTTCGTATACCGGCGGCAACAAGAGGGCCAGGGA
GGCCGACCTTGACGTGGCCTCATCCGCCGAGGCGGAGGCCGCCAAGAGGATACGGCCCGAGGACCTGCTGGACCTGCTCG
ACGATGACGCCGACGCCGCGGCGGCCGGCGACCTGGCCTCCGTCATGCGAAGCCTGGAGGAGGAGATATGCGCCGGCGAC
CTGGCCGCGCCGCAGCCGGAGCTGGGCTTCCTGCTCGAGGCCTCGGACGACGAGCTCGGCCTGCCGCCGGCGGCGGGCGC
GGCGTCCTCCTCGTCGGACGACGCCGGGGGCTGGGAGCCGGAGGAGCCCGCCGGCGTGTTCGGGGAGCAGATCTGGGGCT
TCGAGGACGAGATTGACGGCGCCTACGCCTTCGGCGGCGTCGCCTCATCGCCGGAGGCGGCGGCGGCAGCCGCCGCGGCC
GCGGCCGAGTGGGGCGACGACGGCTTCGACGCCGGCCTCTTCGGCTTCGGCGACGAGTCCTTCGGGCCGTCCGATCTCGC
CGTGCTCCGCCAGGAGACCATGCCGGCCGTTTGATCAGTCGTCGTCAGTGGACGGACGGATGGATGGATGGATTAGCCTT
TTCTT-TTTTACCTTTGGCTAACCTTAGCGTTACC---------------------------------------------
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--------------------------CTTTTTTT-AACCTTTGGGGA-TGTAAAGTTTCTAGATCAAGGAAGGAAGAAAA
AACTGTGGGGAA--------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------GAAAC
CTGGAAAATGTGTTGCTTCGAATGAATGATGTAGAGAGCGCAAAAAGTCATCTGAAGAAAAAAAAA---TCTCTCATGGA
TTCCATAAGAAATCGCTTCATA-----TATTTCATGTTCTTCTAGGAATAATTACTTATTTTATGTGACGCAAGAAAA--
--------------TAAA--------------------------------------------------------------
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------------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G038600
CCCTCGTGCACGGCCGGATTTATAGCGCAAGCAAAGGGCGCCCAAGTTGGTTTTTGACGAGTTTATTCGGGATAAAGTGC
CCC------AGGGCATGGCATCACGTCTGTGTTTG----GTCGCCTTACACTTGTTTAACCTTAAGTTTAATTAAAGGGT
TTATTTTTGC-------------AAGTGATCGTGCCCTCGTGAAATATACTACCCTCAGAAAAGCATACTATGGCGTAAT
AGCATGAA-TGAATGAACTAATAAAAGTCAAGCACCGGCTAATTCTCGCACCCATGATAAAATAGAGCCAGATCGGCAAA
ACTAGCTGCTAAAGGAACGAAAACTAATCTAAGCCACGTTCAAAGGCCA-----CCACTCACCCGTG-AGGCCACGACCC
AT---------CCGCCCCGTTCGACCCAGATGGCCGATAGATATACATAGACGGACCGCCTTTTTAGTTTGCATGG----
--AAAATCTAAATCTAATCTGATGGCAGGAAAATATCAGGTCAAGTTTAGTAGCCGTCGCCGTTCAAACGGCACCACCCC
TCGCCCCACGCCTCACGCGATCCG--------TCCGTCCATCCGTCCAGCGGTGGGTGCCAGCGAACGAACG----AACG
ACGACAAATCTCGCCCACGCCGCTCGGCTCCGCTCCGCACCACACGCCCCCACGACGCGACGAAATCACCACTCCG----
-----GGTCCTCCTTCCAGATGGCATCTCGCCCCGAATAGATAG----ATAGAGTAGGTCAGACACACACACAGTCACAG
GAGAGAGGGAACG---------------TGAGAAACTTAAAAAAGCAACG---------CACACCCACATGGGACACGGA
CGCACCCGGGCCCGCTCCCGGTCCCCCTAGCCGCAGGAGGAGTAGCACTCCGCCCACCAGGCCGTTC-------------
-CGCACCGCCAGCCGTGAAAGAACGAAACCGCACGCACG----AGTGGTCTTTTTGCACGTAACCCCCTGGGAGATCCCT
CCCCGCGCGACCCGGCCCAAAGCCGGGCCAGCGCTATATAAGCCCGAGCCCAACGCGGCGTCGCTGCACAACACGCACCG
CTTTTTGTACTACTCTTTTCTCTCCCATCCTGTGCGCCCTTCGCGTTTCGCGCCCAGAGTGCTCTTTGTTCACGTTCACG
TTCACGTTCACGTCCGTTGCCTTGCACCCACCCACCCCTCGACAGGAAACAAGAAAGAGAAGGCAGAAAAAA-AGCTCGT
CTGCCGGACATGGAGAGCTCCTCCTCGTC---TCTGTTGCTG---AGTTCGTATACCGGCGGCAACAAGAGGGCCAGGGA
GGCCGACCTTGACGTGGCCTCATCCGCCGAGGCGGAGGCCGCCAAGAGGATACGGCCCGAGGACCTGCTGGACCTGCTCG
ACGATGACGCCGACGCCGCGGCGGCCGGCGACCTGGCCTCCGTCATGCGAAGCCTGGAGGAGGAGATATGCGCCGGCGAC
CTGGCCGCGCCGCAGCCGGAGCTGGGCTTCCTGCTCGAGGCCTCGGACGACGAGCTCGGCCTGCCGCCGGCGGCGGGCGC
GGCGTCCTCCTCGTCGGACGACGCCGGGGGCTGGGAGCCGGAGGAGCCCGCCGGCGTGTTCGGGGAGCAGATCTGGGGCT
TCGAGGACGAGATTGACGGCGCCTACGCCTTCGGCGGCGTCGCCTCATCGCCGGAGGCGGCGGCGGCAGCCGCCGCGGCC
GCGGCCGAGTGGGGCGACGACGGCTTCGACGCCGGCCTCTTCGGCTTCGGCGACGAGTCCTTCGGGCCGTCCGATCTCGC
CGTGCTCCGCCAGGAGACCATGCCGGCCGTTTGATCAGTCGTCGTCAGTGGACGGACGGATGGATGGATGGATTAGCCTT
TTCTT-TTTTACCTTTGGCTAACCTTAGCGTTACC---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------CTTTTTTT-AACCTTTGGGGA-TGTAAAGTTTCTAGATCAAGGAAGGAAGAAAA
AACTGTGGGGAA--------------------------------------------------------------------
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---------------------------------------------------------------------------GAAAC
CTGGAAAATGTGTTGCTTCGAATGAATGATGTAGAGAGCGCAAAAAGTCATCTGAAGAAAAAAAAA---TCTCTCATGGA
TTCCATAAGAAATCGCTTCATA-----TATTTCATGTTCTTCTAGGAATAATTACTTATTTTATGTGACGCAAGAAAA--
--------------TAAACAATAAATAAATGCGCTAAAGTATCTTTTATTTCGGCCAAGAAAAATATGCTT---G---AA
TAATGTGAATGAGTGTACGAGTC-AAAAGCAGATGCGGATTTGTGGCCGTTGATGGAAATGTTTCAAATGCTACGGTGCC
TGCACG-TTGGACGTTGAGC---CAACCTAATGACATGACAAACCTAAATATTAATAGTGA-------------------
-GAAA--AAAAGGATATGTGATTCAACTGCCCACCCAGATGGATC-----ATCAGAAGCTTCTAGTGTTCCTCATGTTTC
TGTTACTTTTGAAAAAAAAGAAAAGATAGGCTGACAATTCTCCAGTGTTTATTCTTGGATGGGGT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GGATAATTCTGGCCGGAACGGTTGACCTGTAAAACAAGTGCATCTGCCAAT
ATAC----------------------------------GTTGTGTTTTGATTTTTAAAAAATTTCTGC------------
----------------------------TATATGTACAGAGAATCTTCAAGGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TAGCTGTCTTCGTGTAGCCATTCAAAGAA
AAAAATATACGTTATTTCATTCTATATATATAT-----------------ATATATATGTTAATCAATTAAGAAAGTTCA
TACAGTCATTTCATTATATTTGGATGTGCCGTCTTAGTAAAGTAATCCGAACACATCGATTTTGTCACGAAACTCTCGTG
GAAACATGTCGCGTCAAAGTGTCTGGGCTCTGGACACACACTCTCTCAAATAACTACTCCTATAG----TATAGACACAG
CTTGATTGAAGCTGCTTCCTCTGTAAATAAATATATAAGACGTCTGCAGAGGGAGTAATTGTGCAAAATATTGGGACAGC
CAGACAAGGGATTATGGATGGTATTTCTCGCCGAAGCCTAGCTGTTGCTGGACGGCTAATTTTGTCAATGGCACTTGAAA
AATGAGTTTGCACGACAGC-----GCGAGATTGACCCTTCATAAATTTCTCCTCTTTTTTTCTTTTCTATATTCGGGCAC
TGGGTATGACGTGGTGGATGTCCTCTCCCTCGCTCGGATCTCTTTCGGGCCTGTCCTTCCTGATGACAGGTCACTGTC
>chr3B_1
CCCTCGTGCACGGCCGGATTTATAGCGCAAGCAAAGGGCACCCAAGTTGGGTTTAGACGAGTTTATTCGGGATAAAGTGC
CTGACCCAGAGGGCATGGCATCACGTCTGTGTTTG----GTCGCCTTACAATTCTTTAACCTTCAGTTTAGTTTTTTTTT
TGGCAAC----GTATCTGCGAAAAAATGATTGTGCCCTCTTGAAATATTATACTCCAAAAAAAGTAGTATATACT-TCGC
ATCGTAGCGTGCATGAACTAATAAAAGTGAAGCGCTGGCTAAT-------------------------------------
----------------------------CCGAGCCACGTTGAAAGGCCAGGCCACCACTCACGTTCAAAGGCCACGACCC
GTCTGCCCGTTCCACCC---------------------AGATA----------GACCGCCTTTTTAGTTTGGGAAAGAAG
GAAAAATTTAAATCTAATCTGGTGGCAGGAGAATATCAAGTCAAGTTTAGTAGCCGTCGCCGTTCAAACGCCACCAC--C
TCGCGCCTCACCTCACGCGATCCATCCA--------------------------GCGGTGGGTGGC--AACG----GACC
ACGACAAATCTCGCCCACGCCGCTC-----CGCTCCGCACCACACGCCCCCACGACGCGACGAAATCACCTCCCCTCCCG
GCCCCGGTCCTCCTTCCAGATGGCATCTCGCCCCGAATAGATAGATAGATAGAGTAGGTCAGACACACACACAGTCACAG
GAGAGAGAGAGAGGAGAGAGAACGTGAATGAAAAACTTAAAAAAGCAACGGTACGCACGCACACCCACATGGGACACGGA
CGCACCCGGGCCCGCTCCC------CCTAGCCGCAGGAGTAGCG------CTCCTACCAAGCCGTTCCGCACCGCGCCAC
TCGCACCGCCAGCCGTGAAAGAAAAAGAAAC--CGCACGCACGAGTGGTTGTTTTACAGATAGCCCCCTGGAAGATCCCG
CCTCGCGCGCACTCCCGCTGCCT-GGCCCGGCGCTATATAAGCCCGAGCCCAACGCGGCGTCGCTGCACAACACGCACCG
CTTTTTGTACTCTGA---TCTCTCCCACCTTGTGCGCCCTTCGCGTTTCGCGCCCAGAGTGCTCTTTGCTT---------
---ACGTTCACGTCCGTTGCCTTGCACCCACCCACCCCTCGACGGGAAACAAGAAAGAGAAGGAAGAAAAAAAAGCTCGT
CTGCCGGCCATGGAGAGCTCCTCCTCGTC---TCTGCTGCTG---AGCTCGTATACCGGCGGCAACAAGAGGGCCAGGGA
GGCCGACCTGGACGCGGCCTCGTCCGCCGAGGCGGAGGCCGCCAAGAGGATGCGGCCCGAGGACCTGCTTGACCTGCTCG
ACGACGACGCCGACGCCGCGGCGGCCGGCGACCTGGCCTCCGTCATGCGCAGCCTGGAGGAGGAGATATGCGCCGGCGAC
CTGGCCCCGCCGCAGCCCGAGCTGGGCTTCCTGCTCGAGGCCTCGGACGACGAGCTCGGCCTGCCGCCGGCGGCGGCCGC
GGCGTCCTCCTCGTCGGACGACGCCGGGGGCTGGGAGCCGGAGGAGCCCGCCGGCGTCTTCGGGGAGCAGATCTGGGGCT
TCGAGGACGAGATTGACGGGGCCTACGCCTTCGGCGGCGTCGCCTCCTCGCCGGAGGCGGCAGCGGCTGCCGCCGCGGCC
GCGGCCGAGTGGGGCGACGACGGCTTCGACGCCGGCCTGTTCGGGTTCGGCGACGAGTCCTTCGGGCCGTCCGATCTCGC
CGTGCTCCGCCAGGAGACCATGCCGGCCGTTTGATCAGTCGGCGTCAGTGGACGGACGGATGGATGGATGGATTAGCATT
TTCTT-TTTTACCTTTGGCTAACCTTAGCGTTACC---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------CTTTTTCT-AACCTTTGGGGA-TGTAAAGTTTCTAGATG------------AAA
AACTGTGGGGAA--------------------------------------------------------------------
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---------------------------------------------------------------------------GAAAC
CTGGAAAATGTGTTGCCTCCAATGAATGATGTAGAGAGAAAAAAAGGTCATCTGAA-AAAAAAAAA---TCTCTCAAGGA
TTCCAGAAGAAATTGCATCAA------ATATTTATGTTCTTCTTGGAATAATTTCCTTTTTTAATCAAACGGAAG-----
---A-----------AAAGAATAAATTAATCCGCTAAAGTATCTTTCATTTTGGCCAAGAAAAATATGCTT---G---AA
TAATGTGAATGAGTGTACGAGTCAAAAAGCAGATGCGGATTTCTGGCCGTTGATGGAAATGTTTAAAATGATACGGTGCC
TGCACG-TAGGACGTTGACC---TAACCTAATGACATGACAAACCTTAATAATGGGG------------AAAAAG-----
-GAAAAGAGAAGCATATGTGATTCAACTGCCCACCCAGATGGATTGGAAAATCAGAAGCTTCCAGTGTTCCTCAAGTTTC
TTTATACTTTATT----TAAAAAAGATAGGCTGGGAATTCTCCGGCGTTTATTCTTGGATGGGGT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GGATAATTCTGGCCAGAACGGTTGACCTGTAAAACAAATGCATCTGTCAAG
ATATATTGTTGTGCTTTTTTCAAAAAAAGAAATACTATGTTGTGTCTTGATTTTTCATCAAATAAACAATACATACTTCT
ATACGTTGTGTTTTTCG---TCCACACGTATGTATACAGAGAATCTTCAAGGT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TAGCTGTCTCCGTGTAGCCATCCAGAG-A
AAAAAAATCTGTCGTTTCATTATATATTTACTTTTTTGAAAACCCCTCCAATACATTAATTAATTTATTAAGAAAAATCA
TACAGCCATTTCATTACATTTGGATTTGCCGTCTTCGCA----------AACACATCGATTTTGTCACGAAACTCTCGTG
GAAACATGTCGTGTCAAACTGTCTGGACTCTGGGCACACACACACTCTCTCTCTCTCCACTAAAAAAATTATAGACACAG
TTGATTGAA-----------------------------------------------------------------GACAGC
CAGACAAGAAATTATGGATCGTATTTCTCGCCGAAG-CTAGCTGTTGCCCGACGGCTAATTTTGTCAATGGCACTTGAAA
AATGAGTTTGCGCGACAGCGCGAGGCGAGATTGACCGTTCATAATTTTCTCCTCTTTTTT------CTATATTCGAGCAC
CGGGCATGACGTGGAGGCTGTCCTCTCCCTCGCTGGGATCCCTTTCGGGCCTGTCCTTCCCGATGACAGGTCACTGTC
>chr3A_86
--------------------------------------------------------------------------------
-----------GGCATGGCATCACGTCTGTGTTTGTTTGGTCGCCTTACACTTGTTTAACCTTGAATCAAAAGATTATGT
TTTGCAACGTAGTTTCCGGGAAAAAGCGATCGTGCGCTCGTCAAATATTTTACTCCAAAAAAAGTAGTATATAGTATCGT
AGCATAGCATGGATGAGCTAATAAAAGTCAAGCACCGGCTAATTATCGCAGCCACGATAAAATGGAGCCAGACCCCCAAA
ACCAGCTGCTAATTAAACGAAAACTAATCCGGGCCACGTTGAAAGGCCA-----CCACTCACGTTCAAAGGGCACGACCC
ATATACCCGCCCCGTTCCGTTCCACCCAGATTGTCGATAGATA----------GACCACCTTTTTAGTTGGCATGG----
--A------AAATCTAATCTGGTGGCAGGAAAATATGGAGTCAAGTTTAGTAGCCGTCGCCGTTCAAACGC---------
-------TCACCTCACGCGGGAGGCCGCCCGATCCATCCATCCGTCCAGCGGTGGCGGTGGGTGGC--AACGAACGAACG
ACGACAAATCTCGC-----------------------------------CCACGACGCGACGAAATCACCTCCCCGCCCG
GTCCCGGTCCTCCTTCCAGATGGCATCTCGCCCCGAATAGATAG----ATGGAGTAGGTCAGACACG--CACAGTCACAG
GAGAGAGAACGTGAGAATTTTTTT----TGAAAAACTTAAAAAAGCAACGGGACGCACGCACACCCACATGGGACACGGA
CGCGCCCGGGCCCGCTCCCGGTCCCCCTAGCCGCAG----AGTAGCACTCCTCCCACCAGGCCGTTC-------------
-CGCACCGCCAGCCGTGAAAGAAAAAGAAAC--CGCACG----AGTGGTTGTTTTGCATGTGACCCCCCGGGAGAGTCCG
CGCCGCGCGA-CCGCCCCCACGCCGGGCCAGCGCTATATAAGCCGGAGCCCAACGCGGCGTCGCTGCACAACACGCACCG
CTTTTTGTACTCCTTTCTCCCCCCGTCTC--GTGCGCCCTTCGCGTTTCGCGCTCTCTCTGAGGAGTCGGGTT----ACG
TTCACGTTCACGTCCGTTGCCCCGCACCCACCCACCCCTCCGAGGGAAACGAAAAGAAGAGTT-------------TCCT
CTGCCGGCCATGGAGAGCTCCTCCTCGTCATCTCTGTTGCTG---AGCTCGTATACCGGCGGCAACAGGAGGGCCAGGGA
GGCCGACCTCGACGTTGTCTCGTCCGCGGAGGCCGAGGCCGCCAAGAGGATGCGGCCCGAGGACCTGCTGGACCTGCTCG
ACGACGACGCCGACGCCGCGGCGGCCGGCGACCTGGCCTCCGTCATGCGCAGCCTCGAGGAGGAGATTTGCGCCGGCGAC
CTGGCCCCGCCGCAGCCGGAGCTCGGCTTCCTGCTCGAGGCCTCGGACGACGAGCTCGGCCTGCCGCCGGCGGCGGGCGC
GGCGTCCTCCTCGTCGGACGACGCCGGGGGCTGGGAGCCGGAGGAGCCGGCCGGCGTCTTCGCGGAGCAGATCTGGGGCT
TCGAGGACGAGATTGACGGCGCCTACGCCTTCGGCGGCGTCGCCTCCTCGCCGGAGGCGGCAGCGGCTGCCGCCGCGGCC
GCGGCCGAGTGGGGCGACGACGGCTTCGACGCCGGCCTCTTCGGCTTCGGCGACGAGTCCTTCGGGCCGTCCGATCTCGC
CGTGCTCCGCCACGAGACCATGCCGGCCGTCTGATCAGTCGTCGTCAGTGGACGGGC----GGACGGATGGATTAGCCTT
TTCTT-TTTTACCTTTGGCTAACCTTAGCGCTACC---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------CTTTTTTT-AACCTTTGGGGAATGTAAAGTTTCTAGATGCAAGAAGGAAGAAAA
AACTGTGGGGAG--------------------------------------------------------------------
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---------------------------------------------------------------------------GAAAC
CTGGAAAATGTGTTGCTTCGAATGAATGATGTAGAGAGAACAAAAAGTCACACGAAGAAAAAGAATC-------------
-TCTCGAAGAAATTGCTTCATC-----ATATTTATCTTCTTTTTGGAATAATTTTTTTACGTGACAA-----AAG-----
---A-----------AAAGAATAAATAAATCCGTGAAAGTATCTTTTATTTTGGCCAAGAAAAATTATGCTACTAC--TA
TAATGTGAATGAGTGTACGAGTC-AAAAGCAGATGCGGATTTGTGGCCGTTGATGGAAATGTTCAAAATGATACGGTGCC
TGCACG-TTGGACGTTGACC---TAACCTAGTGACATGACAAACCTAAATAGTGAGA------------AAAATAGTTTG
AAAACATAAAAGCATATGTGATTCAACTGCCCACCCAGATGGATTGGAAAATCAGAAGCTTCTAGTGTTCCTCGGGTTTC
TTTACTTTAT-TT----AAAAAAAGATAGGCTGACAATTCTCCAGCGTTTATTCTCGGATGGGGT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GGATAATTCGGGCCGGAACGGTTGACCTGTAAAACAAGAGCATATGCCAAG
ATAC----------------------------------GTTGTGTTTTGATTTCGAAAAGGAAAAAAAA----------T
ATACGTTGTGTTTTTTTCTCTCTACACATTTGTGTACAGAGAATCTGCAACATTACTATCTTCGTCCTGGTTTATTAGCC
CTCTTAATATTTTGTGTCAAATTTTATTATGAATTTAATTGGTAAAATGTTAATACTTGTCACTAAAATATTATCATTAG
AAACAATGTTGTTCAAATATGATTTCAATAATATAATTTTTTATGACGTGCGTTAATATTTTATCAGTTAAATGTATGAT
TAAATTTTAACATAAAATACGAAAATGACCAATGAATCAGGACGAAGGTAGTAGTTGTTTTCGTGCAGCTAGCAAAAG-A
GAAACTGG------------------------------------------------------------------------
------CATTTCATAATATTTGGATCTGCCGTCTTCATAAAAGAACGAAAACACATCGATTTTGTCAGGAAACTCTCGTG
GAAACATGTCGGGTCAAAGTGTCTGGACTCTGGACACACACTCTCTCTCTCCCTCAG-----AATAAATTACAGGCACTG
TTGGTTGATTTTT----------------------------------------AGTGCTTTTGAAATATATTTGGACAGC
CAGACAAGAAATTATGGATCGCATTTCTCGCCGAAG-CTAGCTGTTGCCCGACGGCTAATTTTGTCAATGGCACTTGAAA
AATGAGTTTGCACGACAGG-----ACGAAATTGACCGTTCATATAATTTCTCTTTTTCTTTCT-----------------
------------------------------------------------------------------------------
>chr3D_1172
--------------------------------------------------------------------------------
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----CGGCCATGGAGAGCTCCTCCTCGTC---TCTCTTGCTG---AGTTCGTATGCCGGCAACAACAAGAGGGCCAGGGA
TGCCGACCTCGAAGTGGGCTCGTCCGCGGAGGCGGAGGCCGCCAAGAGGATGCGACCGGAGGACCTGCTGGACCTGCTCG
CCGACGACACCGACGCCGCGGCGGCCGGCGACCTGGCCTCCGTCATGCGGAGCCTTGAGGAGGAGATATGCGCCGACGAG
CTGATGCCGCCGCAGCCGGAGCTGGGGTTCCTGCTCGAGGCCTCCGACGACGAGCTCGGCCTGCCGCCGGCCGC---CGG
GGCGTCCTCCTCGTCGGACGACGCCGGGGGCTGGGAGCCGGAGGAGGCCGCAGGCCTGTTCGGGGAGCAGATATGGGGCT
TCGAGGACGAGATTGACGGCGCATACGCCTTCGGCGGCGTCGCCTACTCGCCGGAGGCCGCCGTGGCGGCTGCTGCGGCC
GCGGCCGAGTGGGGCGACGACGGCTTTGACGCCGGCCTGTTCGGCTTCGGCGACGAGTCATTCGGGCCGTCCGATCTCGA
CGTGCTTCGCCAGGAGACCATGCCCGCCGTTTGATCAGTCGTCAG---------------TGGATGGATGGATTAGCCTT
TTCTT-TTTTACCTTTGGCTGACTTTAGCTTTA-CCCTTTTTTTAAGAGAAATGTCAAAAATAAACCTTAACTTTATACT
CGAAGTCTGAATGGAACCCTGACCTTAAAATCCCTGAAATTGGTACCCTCTTCTTTTTAATCTTGCCAGGATCGAGGGGA
AAGTGATCACTAGAGAGGCTATGGCGTATCACACGAGTACGTGCGACGATGTATATGCATTTTCATCTTTTTTTTACCTG
CCGTGATCGTTCGTACACGTTGCGCGCCGGGATAAGTTTGTCACGTGTTCAGCTACTTGTAGTACTGCGTACGTGTGTAA
TACGGCAGAAGCAATTGCCTACCTTGCGTATACTATCACATCAAGCCGGAATCGATCAAGATGCTTAGGTAGTCAGCTTC
TTAACATGTACGTGCCCCGGTGCCCGCTGTATCCCACTGTCCGTTGGCCACCTAACAACGGGGAATTGTTGCTGCAGTTC
AAGGCTTCATACGTTCATCAGTGCATGGTCCTGGTCTGCCTCATCGCATGGCAACTCGCCAGCAGCGGCATGGTTTGCGC
CGGCGTCGTTCGACCAGGCGCGAATCCGGCGACACCCCGAAGCAGAGGTGGTTGTGCGCCAGTTTGTTCGTCTCTCGGCG
CGGGACCTGACTACAGAATGAGGTCTCCAAGAACGATGGCAACCGGACAACAAACAACAAAGCTTCTGACCAGCTGACGT
TGCCATCACGTCTCCCGCGGACGCTTCGTGTAGAGCAGCTTGCCGCCGTACCAGCCAAGAGCGGAGTGCCCTTGACGTCG
GTTTACACTCGCACTCCAGCAGCAGACTCTGCGATGAACACACAGCACCGAGGCGCAACGCTTGGGAGCGACGTCTGGCG
AGTAGACATGCATGTGGCATGGCGTATTCCGAGAAGAGAAGAGAAAGAGAGATAGGAAGAAGATGGAGATGTCACGTGGG
CCTAAAATAGTCAATGTGAGAAGTGAGTAATCCCGGTTGGGATCATCCTTTTCCCGGTGCAACAAATATTTCTAGGGCGA
AGATTGACCGGCATCGAAAAATACAGGGTGCCGATTCCAGGGATCGAAAGGTAAGGGTTTGATTCAGATTTCGGATATGA
ATTCAAGGTTTATTTCAGACTTTTGTCTTTTTTT-AACCCTTGGGGA-CGTAAAGTTTCTAGATGATGCAA-GATGAAAA
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CAGTGGGCAAGAAAC
CTGGAAAATGTAGAGAG----------------------AAAAAAA-TCATCTGAAGAAAAAAAAAGATTCTCTCGGGGA
TTCCAGAAGAAATTGCTTCATAGTAGTATATTTTCGTTCTTCTTGGAATAATTTCATTTATAAG-----------ACGAA
AGAA-----------AAAGAATAAATAAATCCGCTAAAGTACCTTTTATTTTGGCCAAGAAAAATATGCAAAGT---ATA
TAATGTGAATGAGTGCACGGGTC-AAAAGCAGATGCTGATTTGTGGCCGTTGATGGAAATGTTCAAAATGATACGGTGGC
GGCATG-CTGGACGTTGACC---TAACCTAATGAAGAACCTA----------------AATAGTGAGAAAAAAA------
-----ATTAAAGCATGTGTGTTTCAACTGCCCACTCACACGTATTGGAAAATCAGAAGCTTCTAGCGTTCCTCATGTTTC
TTTACTTT---TT----ATAAAAAGATAAGCTGACAAATCTTCGACGTTTATTCTTGTATTAAAATAAATAAATAGTACT
CCATCCGTTCCTAAATATAAGTCTTTGTAGAGATTTCAACAGAGACTATATATGGATGTATATAGACATATTTTAGAGTG
TAGATTCACTCATTTTGCTCCGTATGTACTCACTTTTTAGAATATCTGAAAAGACTTATAGTTAGGAACGGCGGGAGTAA
AAGAAACTTGGATGTGAGTTGGATGGACCGGATAATTCTGACGGGAACGGTTGACCTGTAAAACAAGAGCATCTGCCAAG
ATGC----------------------------------GTGGGA--TTTTTTCTG-------------------------
------------------------CTCGTATCTATACAGCCCGTATAATACAAGCGATCTG-------------------
--------------------------------------------------------------------------------
---CAAGGTGTAACAACTATCATCTCATCTTATTCTGCTAG---------------------------------------
--------------------------------------------------------------------------AA----
------------------------------------------------------------------------AAAAACTA
TCAACTCAT----TCATATTCAGATTTGCCGTCTCAATAAAGTAGTGTAGACACACCGT---------------------
------------GTCATAGTGTC------------------------------------------------------AGA
CTGATTGAACTAGTT---------------------------------------GTGCTTGTGAAAAATATTGGGACAAG
GAGACGAGAAATCAGGGGTCGTATTTCTCGCCGAAGCCTAGCTGTTGCTGGACGGCTAATTTTGTCAATGCCACTTGAAA
AATGAGTTTGCACGACAGC-----GCGAGATTGACCCTTCATAAATTTCTCCTCTTTTTTTCTTTTCTATATTCGGGCAC
TGGGTATGACGTGGTGGCTGTCCTCTCCCTCGCTCGGATCTCTTTCGAGGCTGTCCTTTCCCGTGACAGGTCACCGTC
>chr3B_1172
--------------------------------------------------------------------------------
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----CGGCCATGGAGAGCTCCTCCTCGTC---TCTGTTGCTG---AGTTCGTACGCCGGCGACAACAAGAGGGCCAGGGA
TGCCGACCTCGAAGCGCTCTCGTCCGCGGAGGCTGACGCCGCCAAGAGGATGAGGCCGGAGTACCTGCTGGACCTGCTCG
ACGACGACACCGACGCCGCGGCGGCCGGCGACCTGGCCTCCGTTATGCGAAGCCTTGAGGAGGAGATATGCGCCGACGAC
CTGACGCCGCCGCAGCCAGAGCTGGGGTTCCTGCTCGAGGCCTCGGACGACGAGCTCGGCCTGCCACCGGCCGC---CAG
GGCGTCCTCCTCGTCGGACGACGCCGGAGGCTGGGAGCCGGAGGAGCCCGCCGGCGTGTTCGGAGAGCAGATCTGGGGCT
TCGAGGACGAGATTGACGGCACCTACGCTTTCGGCGGCGTCGCCTACTCACCGGAGGCCGCCGTGGCGGCTGCTGCGGCC
ACAGCCGAGTGGGGTGACGACGGCTTTGACGCCGGCCTGTTCGGCTTCGGCGACGAGTCCTTCGGGCCGTCCGATCTCGC
CGTGCTTCGCCAGGAGACCATGCCCGCCGTTTGATCAGTCATCAG---------------TGA----ATGGATTAGCCTT
TTCTT-TTTTACCTTTGGCTAACTTTAGCTTTA-C---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------CC-TTTTT-AACCTTCGGGGA-TGTAAAGTTTCTAGATGCAAGAAGGAAGAAAA
AACTGTGGGGAAGAAACTTTTTTTTTTTCGGGAAAAACTTTCAATCTATTCATCTTCAATCATGGTAGTACAACGAACAC
TGGAAATAATAAAAAATTACATCCAGATCCGTAGACCATCTAGCGACGACTACAAGCACTGAAGCGAGCCGAAGGCGCGC
CAATGTCATCGCCCCTCCCTCGCCGGAGTCAGGCAAACGTTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGGCTC
CATAGAACCAACACATCAGAACAGCAACCGCCGCAGATGAAGAGTGTAGATCAAAAGGATCCAACCCGAGGACACACAAA
CGAACACGAACGATGAATAGATCCGAGCAAATCCACCAAAGACAGATCCGCCGGAGACACACCTCCACACGCCCACCGAT
GATTCTAAACGAATCACCGGAACGGGGGCTAGGCGGGGAGACCTTTATTCCATCTTCAGGGAGGCGCCGCCGTCTCGCCT
TCCTGAGCAGGATACAAACCCTAATAAAGCTTAAAAAAATATCTAAAAACGGAGCCCCCCACCGACAAGGGCTGAGATCC
ACTCCGTCTCCATGGGCCTAAGGCCGCCGGAGACGGGACGGATCGGCGCCGGCGCCGGCGGGAGGCTGTGGGGAAGAAAC
CTGAAAAATGTGTTGCTTCGAATGAATGATGTAGAGAGAGCAAAAA-TCATCTGAAAAAAAACT-------CTCCCTGGA
TTCCAGAAGAAGTTGTT---TC-----ATATTTATGTTCTTCTTGGAACAAATTCTTTCTTTTTTGCGATTGGAATAAAT
TCTTTTTTATGAATGAAATGGTAAATAAACCCGCTAAAGTATCTTCTATTTTGGCCAAGAAAAATATGCTAGTACTAATA
TAATGTGAATGAGTGTATGAGTG-GAAAGCAGATGCGGA-TTGTGGCCGTTGATGGGAATGTTCAAAATGATATGGTGCC
TGCACG-TTGGACGTTGACATAATAACTTAATGACATGACAAACCTAAATATTAACACTGA-------------------
-GAAAAGAAAAGGATATGTGATTCAACTGCCCACCCAGATGGATTGGAAAATCAGAAGCTTCTAGTGTTTCTCACGTTTC
TTTACTTT---TA----TATAAAAGATAGGCTGACAAATCTCCAGCGTTTATTCTTGAATGAGT--AA------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAA
AAGATACATGGATATGTATTAGATGGACCGGATAATTCTGGCGGGAACGGTTGACCTGTAAAATAAGGGCATCTGCCAAG
CTGC----------------------------------GCGGGATTTTTTTTCTG-------------------------
------------------------CTCGTATCTGTACAGCCCATATAATACAAGCGATCTG-------------------
--------------------------------------------------------------------------------
---CAAGGTGTAACCACTATCATCTCATTCCTCG----------------------------------------------
-------------------------------------------------------------------------CAAAA-A
AAAAAAAACTCTCATCTCATCTCATTCAGCTAA------------------------------------AAGAAAAACAA
TAAACTCAT----TCATATTCATATCTGCCGTCTCATTTAAGTAATGTAGACACATCGAATTTGTCACGAAACTCTCGTG
GAAACATGT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr3A_1172
--------------------------------------------------------------------------------
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----CGGCCATGGAGAGCTCCTCCTCGTC---TCTGTTGTTGCCGAGTTCGTATGCCGGCAACAACAAGAGGGCCAGGGA
TGCCGGCCTTGAG------------GCGGAGGCGGAGGCCGCCAAGAGGATGCGGCCGGAGGACCTGCTGGACCTGCTCG
ACGACGACACCGACGCCGCGGCGGCCGGCGACCTGGCCTCCGTCATGCGGAGCCTTGAGGAGGAGATATGCGCCGACGAC
CTGACGCCGCCGCAGCCAGAGCTAGGGTTCCTGCTCGAGGCCTCGGACGACGAGCTTGGCCTGCCGCCGGCCGC---CGG
GGCGTCCTCCTCGTCGGACGACGCTGGGGGCTGGGAACCAGAGGAGCCCGCCCGCGTGTTCGGGGAGCAGATATGGAGCT
TCGAGGACGAGATTGAGGGCGCCTACGCCTTCGGCGGCGTTGCCTACTCGCCGGAGGCCGCCGTGCCGGCTGCTGCGGCC
GCAGCCGAGTGGGGCGACGACGGCTTCGACGCCTGCCTGTTTGGCTTCGGCGACGAGTCCTTCGGGCCGTCCGATCTCGC
CGTGCTTCGCCAGGAGACCATGCCCTCCGTTTGATCAGTCATTAG---------------TGA----ATGGATTAGCCTT
TTCTT-TTTTACCTTTGGCTAACATTAGCTTTA-C---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CCTTTTTT-AACCTTTGGGGA-TGTAAAGTTTCTAGATGCAAGATG-----AAA
AC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CTGTGGAGAAGAAAC
CTGGAAAATGTGTTGCTTCGAATGAATCATGTAGAGAGAAAAAAAA-TCATCCGAAGAAAAAAAAT---TTCTCTCAATG
TTCCAGAAAAAATAGCT---TC-----ATATTTATGTTGTTCTTGGAATTTTTCTTTTTATATG-----------AAAC-
-GAA-----------AAAAATTAAATAAATCCGCTAAAGTGTCTTTTACTTTGTCGATGAAAATTATGTTA---G---TA
TTATGAAAGCGAGTGTACGAGCC-AAAAGCAGATGCGGATTTGTGGCCGTTGATGAAAATGTTCAAAATGATAGGGTGCC
TGCACG-TTGGACGTTGACC---TAACCTAATGACATGACAAACCTAAATAGTACTGTAATAGTGAGAAAAAAAG-----
-AAAGATAAAAGCATGTGTGATTCAACTGCCCACTCACACGGATTGGGAAATCACAATCTTCTAGTGTTCCTCATGTTCA
CTTTA-TT---T-----AAGAAAAGATAGGCCAATAATTCTCCAGCGTATATTCT-------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>chr3A_1172
--------------------------------------------------------------------------------
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----CGGCCATGGAGAGCTCCTCCTCGTC---TCTGTTGCTG---AGTTCGTACGCGGGCAGCAACAAGAGGGCCAGGGG
TGCCGACCTTGAAGTTGTCTCGTCCGCTGAGGCGGAAGCCGCCAAGAGGATGAGGCCCGAGGACCTACTGGACCTGCTCG
ACGACGACACCAACGCCGCGGCGGCCGGCGACCTGGCGTCCGTCATGCGGAGCCTTGAGGAGGAGATATGCGCCGACGAC
CTGACGCCGCCTCAGCCAGAGCTAGGCTTCCTGCTCGAGGCCTCGGACGACGAGCTCGGCTTGCCGCCGGCGGC---CGC
GGCGTCCTCCTCGTCGGACGACGCCGAGGGCTGGGAGCCGGAGGTGACCGCCGGCGTGTTCGGGGAGCAGATATGGAGCT
TCGAGGACGAGATTGAGGGCGCCTACGCCTTCGGCGGCGTTGCCTACTCGCCGGAGGCCGCCGCGGCGACCGCAGCGGCC
GATGCTGAGTGGGGCGACGACGGCTTCGACGCCGGCCTGTTCGGCTTCGGCGACGAGTCCTTGGGGCCGTCCGATGTCGA
CGTGCTTCGCCAGGAGACCATGCCCGCCGTTTGATCAGTCATCAG---------------TGA----ATGGATTAGCCTT
TTCTTTTTTTACCATTGGCTAACTTTAGCTTTA-C---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CCTTTTTTTAACCTACGGGGA-TGTAAATATTCTAGATGCAAGAAGGAAGAAAA
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CTGTGGGGAAGAAAC
CTGAAAAATGTGTTGCTTCGTATTAATGATGTAGAGAGAACAAATA-TCATCTGAAGGAAAAAAAA---ACCTCCCTGGA
TTCTAGAAGAAATTGTT---TC-----ATATTTATGTTCTTCTTGGAACAACTTCTTTTTTATG-----------AAA--
--------------GAAATAGGAAATAAACCCGCTAAAGTATCCCCTATTTTGGT--AGAAATGTATGCTAGTAG---TA
TAATATGAACGAGTGTAAGACTC-AACAGCAGATGCGGAATTATGATCGTTGATGGAAATGTTCAAAATGATAAGGTGCC
TGCACGATTGGAGGTTGACC---TAACCTAATGACATGACAAACCTAAATACGTC---------GAGAAAAAAAG-----
-AAAGCT----------------------------------GATTGGATAATCAGAAGCTTCTAGTGTTCCTCATATTTC
TTTACTTT---T-----TAAAAACGATAAGCTGACAAATCTCCGGCGTTTATTCTTGAATGAATAAAA------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TAA
AAGATACTTGGATGTGAGTTGGATGGACCGGATAATTCTGGCGGGAACGGTTGATCTGCAAAACAAGAGCATCTGCCAAG
ATGC----------------------------------GTGGGAA-TTTTTCCTG-------------------------
------------------------CACGTATCTATACAACCCGTATAATACAATCGGTCTG-------------------
--------------------------------------------------------------------------------
---CAAGGTGTAGCTATTATCATCTCAATCAACTAGAATTTTTTTAAATGAGATTGTTGGCCACTAGCACTTGGGGCATA
TTTTTATAAAAGAACCCCATCTGATAGAGATTGCGAAAATTCGCTCCCGACGGACGTTGAACCCCAGTGTGAGAAA----
------------------------------------------------------------------------AAAAACTG
TCAACCCAT----TCATATTCAGATTTGCCGTCTCAATAAAGTAATGTAGACACATCGAATTTTTCACGAAACTCTCGTG
GAAACATGTCGCGTCATAGTGTCTGG------------CACACAGTCTCTCTGTGCCAGATAAAAAAAACACATATAAGA
CTGATTGAACTACTC---------------------------------------CTAATTCTAAAAAATATTTGGACAAG
GAGACGAGAAATCAGGGGTCGTATTTCCCGCCGGAG-CTAGCCGTTGCTGGACGGCTAATTTTGTCAATGGCACTTGGAA
AATGAGTTTGCACGACAGC-----GCGAGGTAGACCCTTCATAAATTTCTCCTGTTTTT-------CTACATTCGAGCAC
TGGGCATGACGTGGTGGCTGTCCTCTCCCTCGCTCGGATCTCTTTCGGGGCTGTCCTCTCCCGCGATAGGTCACCGTC
>SNPs
---------------------------------------S----------S---S-------------------------
-SS------------------------------------------------------------S----------SSSS--
--SSSSSS-S--------------------------------------SS---S-SS-S-----S-SSS---S-SS-SS-
-----SSS---S--------------------------------S-----S---S--------S--------S-SS----
--S---------SSS--------------SS---------S---------------------SSSSS-------------
----------------------S--------S-S---------SSSSSSSSSS---------------------------
-------S-------------S----------------S-------------------------------S------SS-
----S--S-S-------------------------S-------------------SS-SSS-S-SSSS------------
-------------------------SSSSS----------------------------------------S-S-------
--------------------------------------------------------------------------------
-------S--SS-------------------S------------------------------------------------
---------------------------------------S-----------S----------------------------
-----------------------SS-S-SSSSS----------------SS-------S--------------------S
----------S---S---S-S-----------------------------------------------------------
-----------S--S-S------------S--------------------------------------S-SSSSSSS---
-------------------------------------------S-------------------S----------------
-------S------------------------------------------------------------------------
---------------------S-----------------------------S----------------------------
----S---------------------------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S--------------S-----S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
-----S-------S-------------SSS--S----------S---------S---S------SSS-SSSS-S------
--------------S---S-----------S--------------------S----------------------------
----------------------------------------------------------------S-----S---------
------------------S----S---------------------------------S----------------------
--------------------------------------------S-----------------------------------
-S---S----SS-SSSS----------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
-------------------------------------------------------------S-SSSSS------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-----S-
--------SS--S--------S-------------------------------S--SSS-----SS---------SS---
-------------------------S--------------------SSS-------------------------------
--------------------------S--------------------SSSSSSSS--SS---S-S---------------
--S-S-SS-SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------------
--------SS---------S------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S------------------------------------------S-----------------
>forward_993
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CGTGAAAGAACGAAACCGCA-----------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>reverse_5300
--------------------------------------------------------------------------------
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-------------------GGTATTTCTCGCCGAAGCCT-----------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
