>input_sequence_61994
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-------------------------------------------------------------------------------G
AGACAAGACAAACACACACACACGGCCCGCGCTGCAGCGTTGCCGCCTACCGCCACGGTGCCACCGACGATCGACCACGA
CGCTTCCATGGCTGCCTCTGCTTCCCGCCTCTGCCTTCTCGCCATCGCGTTCCTCCTCGCCGTCGCCGCACCTCGCGTGG
ACGCGTGGGGCGGCCGCTTCTTCTTCAGCAAGATGACGCGCCCCGGGGCCGTCGTCGAGGCCGACAAGGCGGCGGACACG
GCCACCGTGGCGACGGAGGCGCTCGACACCAACAGCGCGCCGGCGGCATTCCCGCGGCCGTCCAGCAACCGCGGCTACGG
CCTCTACGGCCGCCCGGAGGAGAACGAGAAGTACCCGCCGGCCTACTTCCGCCGCGGCGTGCACCGCGACGCCGAGAAGC
TGACGACCACCAACGTCGTGCCGACGACGGAGCCGCGGCACCGGGAGGAGGCGGCTGTCCCGGCGCAGGAAGAACAATCC
TCGGGCGAGGAGGAGCCGGCGTTCCCCGCGGACGGCAGCGGCAGGGGGCGGCCGCTGTCGTACATGCGCCACGGCGGCAA
GCACGAGCGCGACTACTACGGGATGAGCGACACGAGGCTGTACCAGAACGGGCGGTACTACTACGACGTGGAGACCGACA
AGTACGGCTACGGCTACGAGTCCAACCCGGTGCGGACGGCGCGCCCCGAGCCCGAGGACAACGGCTCCGGGTACGGCCGC
CCCGGCCGCGAGCGGAGGTACGGCGACGCGGCCGTATACGAG------AACGATAACGACAACGGGGTGACCGAGAAGCA
GAGCGACGACGGCGGCGTCCAGGAAAACCAGAACGGGCAGTACAATCCATGAGTAAGACGTATACGAGGGGTTTGTTTCT
GCTTGCGATCGTCAGATACGCTGTGTGGTAGGAGTATAATGCTCCTTGCTTGTGTGCTGCAAGCTAGCACGACGTCGTTA
CTACTTGCTACTTCTACTATGCTGAAGGATGAGCTATCTAGCTCCCGGTGTGGAATGGTGGTGAAACATA-TTACGTACG
GATGAATAATCTGTGTGAGTAATG--------------------------------------------------------
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>chr3A_1_TraesCS3A01G292500
AGTCCTAAAATTGATACTAGTGCTCATAGCATCACAAGGCCATCGGCCAAACTAAATCACGCAGGTTCGGGAACAAAATG
AGACGCTAACCTCCCTTGGTTGCGTTTGGCGGCACCCTCGCGAGATTGTAAACAAGTCAAAGCCGCTCCGCAACCACCTG
CATCGCCTCAGTGTCCTGATGCCTCCTCAACAGGGCCCACTGCTGCATAAAAGTAGTGCATTTGAAGATACAATCAGCTG
GGTGTACAAGTAAAATGTTCCCAATAGTTAACTTGTTTGCGAATGTGCCATAGTGACCAAAGAAGTGCCCCAACACTCCA
TCAAAGCACCCTCTTTGCCGCGCCATATAGTGAAGCAAGACAGAGAAGGAGATCCGCACATGACTTAGGGTTCCAGTTGA
CCCATCCGCCTCATGGACGGCGCTCCAAGCAAATTTAGCGAGATGACATCTAAATAACACGTGATTAGCATTTTTAGGAG
CTGCGCACATGGCACACAAACCCGTAAAAGGGTCATGGCGCTTAGCGATGTTAATCGAGGTTGAAAGCTTGTTACAGAAC
GCTTGCCAGAGAAAAACATTAACTTTAAGCAGGATGCGCACTTTTCATAGACCCATAGCTATGTCCATCGCTGTACTTTA
GTAAGTCTTTCATAGAGTAACTTGACTGAAAATTTACCCGAGATTCGA-TAGGTATTTAAGAACTCACGCTGCCAAAATG
CTGGTTCGGGAGCAAACTTGATCGCTCGCAGCTCATGACTTCCATCAATGCGAGACTTACGCAAATGTCTCCTGGATCTC
GCACGCAATTTCATGCATCATGCGCACTGCGCCGTGCACTCACGCTCTCCGCCCACCCCGCATTCCGCGCATCGACC---
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-----------------------------------ATCGCCACGGCCCTTTCCAATCTACCATCGCTTGCTACCAAAGCG
GTTCAATTATCCGACGCCTCTCAGACTCTAGCGGCCACATACCGGCACGGCTATATATACAAGTGCGAGGGCGCGCACGG
AGACAAGACAAACACACACACACGGCCCGCGCTGCAGCGTTGCCGCCTACCGCCACGGTGCCACCGACGATCGACCACGA
CGCTTCCATGGCTGCCTCTGCTTCCCGCCTCTGCCTTCTCGCCATCGCGTTCCTCCTCGCCGTCGCCGCACCTCGCGTGG
ACGCGTGGGGCGGCCGCTTCTTCTTCAGCAAGATGACGCGCCCCGGGGCCGTCGTCGAGGCCGACAAGGCGGCGGACACG
GCCACCGTGGCGACGGAGGCGCTCGACACCAACAGCGCGCCGGCGGCATTCCCGCGGCCGTCCAGCAACCGCGGCTACGG
CCTCTACGGCCGCCCGGAGGAGAACGAGAAGTACCCGCCGGCCTACTTCCGCCGCGGCGTGCACCGCGACGCCGAGAAGC
TGACGACCACCAACGTCGTGCCGACGACGGAGCCGCGGCACCGGGAGGAGGCGGCTGTCCCGGCGCAGGAAGAACAATCC
TCGGGCGAGGAGGAGCCGGCGTTCCCCGCGGACGGCAGCGGCAGGGGGCGGCCGCTGTCGTACATGCGCCACGGCGGCAA
GCACGAGCGCGACTACTACGGGATGAGCGACACGAGGCTGTACCAGAACGGGCGGTACTACTACGACGTGGAGACCGACA
AGTACGGCTACGGCTACGAGTCCAACCCGGTGCGGACGGCGCGCCCCGAGCCCGAGGACAACGGCTCCGGGTACGGCCGC
CCCGGCCGCGAGCGGAGGTACGGCGACGCGGCCGTATACGAG------AACGATAACGACAACGGGGTGACCGAGAAGCA
GAGCGACGACGGCGGCGTCCAGGAAAACCAGAACGGGCAGTACAATCCATGAGTAAGACGTATACGAGGGGTTTGTTTCT
GCTTGCGATCGTCAGATACGCTGTGTGGTAGGAGTATAATGCTCCTTGCTTGTGTGCTGCAAGCTAGCACGACGTCGTTA
CTACTTGCTACTTCTACTATGCTGAAGGATGAGCTATCTAGCTCCCGGTGTGGAATGGTGGTGAAACATA-TTACGTACG
GATGAATAATCTGTGTGAGTAATGGAATGTCTACTGTTATTAGCAAGTGCTTCTCT------ACTTCGCTGTTCATTTCT
GTCGGTGCATGGACCCAGTTCGTGTGCCAGAATGAAGAAAATAGTGGGGCGATCAAGCCTCATTCGGAAAGGCATGATTG
GTTT------------------------------------TGGACGTGGAACGTTTGAGCTAGGAATTAGAATGGCACTT
TCGCCTTTTGCTGCGTTAGATTCGCACCAAAATTTTTAAA-----CCGG--CATCCCGGAGAGTA-------------CC
AGCTACCTACCTACCTTGTGTCCTTGTGAAGTCGATCGAATTACTGCCTTCACGTCGATGCATGGGTGATGGATTACAAA
GTGGCGCGCCATAATTAATTTCAGTAAACAAACCACATTACCATGTAGGCCACAATTTGTCCTCCTCAGAGGACAAGGTG
CATGGCGTAACTGCAGTGCCGACTGACTGCTCACATTGGATGCT-GTGGCACCTACCAAACAACGACCTACGGGGCCATC
GATCATGGCCTTTGGGTGTGTCTGTACCTACAGCTGGAGCACTGTACCACTTTGTTCGCTGCAACTAGACCTTCGGTTCA
TTAAACCTAGCGTCCAAAGCTCAGTACCTTTTGTTCGAAAGTTGATGCGCATTGAACTTCATGGTGCCACCACGGTAAGT
CTTGCCGGATAGATAGAGGACCATCATGTATCAAGGAGTTTCTGCATCTTGATCGTAACTCTATTGTCCTGGGATAAATT
TCTTTCACCCCACACAAAAAAATAATTTTGCCGTCCGATCACTCTTCTTTCTTTAGTTTATTTGTGTACTAGTAATTGTA
TATGCCTAGCATTGTCGGTTGGCGTGTGGAGATGTGTCTCCGACGGATTTGTCTTTGATGGATTTGTTCGGATCTGGTCG
TAGTTTGTCTACGTTTCTGTTTCTTCAGGTTAGATCCTTCCGATCTATGCTACTCTTCATCAACGGCGGTTGCTGTTCTG
CTGCGTTGGTCCTATGGGGTCTTAGCATGACGACTTCCCGACTGTCT
>chr3D_679
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--------------------------------------CGAGATTCGATTATGTATTTAATAACTCACGCTGCCAAAATG
CTGGTTCGGGAGCAAACTTGATCGCTCGCAGCTCATGACTTCCATCAATGCGAGACTTACGCAAATGTCTCCTGGATCTC
GCACGCAATTCCATGCATCATGCGCACTGCGCCGTGCACTCACGCTCTCCGCCCACCCCGCAATCCGCGCATCGACC---
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-----------------------------------ATCGCCG-GGCCCTTTCCAATCTACCGTCGCTTGCTACCAATGCG
GTCCAATTATCCGACGCCTCTCAGACTCTAGCGGCCACATACCGGCATGGCTATATATACAAGCGGGAGGGCGCGCTCGG
AGACAAGACAAACACACACACACGGCCCGCGCTGCAGCGTTGCCTCCTACTGCCACGGTGCCACCGACGATCGACCACGA
CGCTTCCATGGCTACCTCTGCTTCCCGCCTCTGCCTTCTCGCCATCGCGTTCCTCCTCGCCGTCGCCGCACCCCGCGTGG
ATGCGTGGGGCGGCCGCTTCTTCTTCAGCAAGATGACGCGCCCCGGAGCCGTGGTCGAGGCCGACAAGGCGGCGGACACC
GCCACCGTGGCGACGGAGGCGCTCGGCACCAGCAACGCGCCAGCGGCGTTCTCGCGGCCGTCCAGCAACCGCGGCTACGG
CCTCTACGGCCGCCCTGAGGAGAACGAGAAGTACCCGCCGGCCTACTTCCGCCGCGGCGTGCACCGCGACACCGAGAAGC
TGACGACCACCAACGTCGTGCCGGAGACGGAGCCGCGGCACGAGGAGGAGGCGGCCGTCCCGGTTCAGGAAGAACAATCC
TCGGGCGAGGAGGAGCCGGCGTTCCCCGCGGACGGCAGCGGCAGGGGGCGGCCGCTGTCGTACATGCGCCACCGCGGCAA
GCACGAGCGCGACTACTACGGGATGAGCGACACGAGGCTGTACCAGAACGGCCGGTACTACTACGACGTGGAGACTGACA
AGTACGGCTACGGCTACGAGTCCAACCCGGTGCGGACGGCGCGCCCCGAGCCCGAGGACAACGGCTCCGGGTACGGCCGC
CCCGGCCGCCAGCGGAGCTACGGCGAGGCGGCCGGATACGAG------AACGACAA------CGGGGTGGCGGAGAAGCA
GAACGACGACGGCGGCGTCCAGGAAAACCAGAACGGGCAGTACAATCCATGAGTAAGACGTATACGAGGGGCTTGTTTCT
GCTTGCGATCATCAGATACGTTGTGTGGTAGGAGTATAATGCTCCTTGCTTGTGTGCTGCAAGCTAGCACGACGTCGTTA
CTACTTACTACTTCTACTACGCTGAAGGATGA--------GCTGCCGGTGTGGAATGGTGATGAAACGTATTTACGTACG
GATGAATAATCTGTGTGAGTAATGCAATGTCTACTGTTGTTAACAAGTGCTTCTCCTTCTCCACTTCACTGCTCATTTCT
GTCGGTGCACGGGCCCAGTTCGTGTGCCAGAATGAAGAAAACAGTGGGGTGATCAAGCCTCATTCTGAAAGGCATGATTG
GTTTAGTCGCACTCGCACATATATTTTCCGGGTCCGCCATTGGACGTGGAGCACTTGAACTCGGGATTACAATGGCACTT
TCACCTTTTGCTGCGTTAGATCCGCACCAAAAATTTCAAA-----CCTGTTCATCCCGGAGAGTA-------------CC
ACCTACCTACCTA----GTGTCCTTGTGAAGTCGATCGAATTACTCCCTTCACGTCGATGCATGGACGATGGATCACAAA
GTGGCGCGCCATAATTAATTTCAGCAGACAAACCACATTACCACGTAGGCCACAATTTGTCCTCCTCAGAGGACAAGGTG
CGTGGCTAAACTGCAGTGCCGACCGCTGCTTTGCATTGGATGCTGGTGGCACCTACCAAACAACGACCTACGGGGCCATC
GATCATGGCCTTTGGGTGTGTCTGTACCTACAGCTGGAGCACTGTACCACTTTGTTCGGTGCAACTAGACCTTCGGTTCA
TTAAACCTAGCGTCCAAAGCTCAGTACCGTTTGTTCGAAAGTTGATGCGCATTGAACTTCATGGTGACACCACGGTAAGT
TTTGCCGGCTACATAGAGGATGATCGTGTATTGAGGAGTTTCTGCATCTTGAT---------------------------
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>chr3B_679
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--------------------------------------CGATATTCGA-TAGGTATTTAAGAACTCACGCTGCCAAAATG
CTGGTTCGGGAGCAAACTTGATCGCTCGCAGCTCGCACG------CAATGCGAGACTTACGCAAATGTCTGCTGGATCTC
GCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCGGCACGGCCCTTTCCAATCTACCATCGCTTGCTACCAAAGCG
GTCCAATTATCCGACGCCTCTCAGACTCTAGCG-CCACATACCGGCACGGCTATATATACAAGTGGGAGGGCGCGAACGG
AGACCAG----ACAAACACACACGGCCCGCGCTGCAGCGTTGCCGCCTACCGCCACGGTGCCACCGACGATCGACCACGA
CGCTTCCATGGCTTCCTCTGCTTCCCGCCTCTGCCTTCTCGCCATCGCGTTCCTCCTCGCCGTCGCCGCACCCCGCGTCG
ACGCGTGGGGCGGCCGCTTCTTCTTCAGCAAGATGACGCGCCCCGGGGCAGTCGTCGAGGCCGACAAGGCGGCGGACACG
GCCACCGTGGCGACGGAGGGGCTCGACACCAACAGCGCGCCGGCGGCATTCTCGCGGCCGTCCAGCAACCGCGGCTACGG
TCTCTACGGCCGCCCGGAGGAGAACGAGAAGTACCCGCCGGCCTACTTCCGCCGCGGCGTGCACCGCGACGCTGAGAAGC
TGACGACCACCAACGTCGTGCCGGAGACAGAGCCGAGGCACGGGGAGGAGGCGGCCGTCCCGGTGCAGGAAGAACAATCC
TCGGGCGAGGAGGAGCCGGCGTTCCCCGCGGACGGCAGCGGCAGGGGGCGGCCGCTGTCGTACATGCGCCACGGCGGCAA
GCACGACCGCGACTACTACGGGATGAGCGACACGAGGCTGTACCAGAACGGCCGGTACTACTACGACGTGGAGACCGACA
AGTACGGGTACGGCTACGAGTCCAACCCGGTGCGGACGGCGCGCCCCGAGCCCGAGGACAACGGCTCCGGGTACGGCCGC
CCCGGCCGCGAGCGGAGGTACGGCGACGCTGCCGGAGACGAGAACGACAACGACAA------CGGGGTGGCCGAGAAGCA
GAACGACGGCGGCCA---CCAGGAAAACCAGAACGGGCAGTACAATCCATGAGTAAGACGCATACGAGGGGTTTGTTTTT
GCTTGCGACCGTCAGATACGCTATGTGGTAGGAGTATAATGCTCCTTGCTTGTGTGCTGCAAGCTAGCACGACGTCGTTA
CTACTTGCTACTTCTACTATGCTGAAGGATGAGCTATCTAGCTGCCGGTGTGGAATGGTGGTGAAACATA-TTACGTACG
GATGAATAATCTGTGTGAGTAATGCAATGTCTACTGTTGTTAACAAGTGCTTCTCT------ACTTCGCTGTTCATTTCT
GTCGGTGCACGGACCCAGTTCGTGTGCCAGAATGAAGAAAATAGTGAGGCAATCAAGCCTCATTCGGAAAGGCATGATTG
GTTTAGTCGCATG------TATATTTCCTGTGTCCGCCTTTGGACGTGGAACGTTTGAGCTAGGAATTAGAATGGCACTT
TCGTCTTTTGCTGAGCTAGATTCGCACCAAAAATTTCAAATTAAACCTGTTCATCCCCATGGGTGTCTACCTACCTACCC
ACCCACCCACCTC----GTGTCCTTGTGAGATCGATTGATTTACTCCCTTCACGTCGATGCATGGGTGATGGATCACAAA
GTGGCGCGCCATAATTAATTTCAGCAGACAAACCACATTACCACGTAGGCCACAATTCGTCCTCCTGAGAGGACAAGGTG
CATGGCGAAACTGCAGTGCCGACTGCTGCTTTGCATTGGATGCTGGTGGCACCTACCAAACAACGACCTACGGGGCCATC
GATCATGGCCTTTGGGTGTGTCTGTACCTACAGCTGGAACACTGCACCACTTTGTTCGGTGCAACAAGACCTTCGGTTCA
TTAAACCTAGCGTCCAAAGCTCAGTACCTTTTGTTCGAAAGTTGATGCGCATTGAACTTCATGGTGCCACCACGGTAAGT
TTTGCCGGCTACATACAGAACCATAATGTATTGAGGAGTTT---------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
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----------S---------------------------------------------------S-----------------
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--S--------------------------------------------------------------S--------------
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-------------S----------------------------------------------------------S-------
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---------------------------------------------------S----------------------------
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-----------------------SS----------------S-------------S-------S----------------
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---------------------------------------------------S----------------------------
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----------------------------------S------------------S--SSSSSS-------S----------
--S-----------------------------------------------------------------------------
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-------------------------------------------S------------------------------------
------------------------S-------------S---S-------------------------------------
---------S----------------------------------------------------------------------
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--------------------------------S---S----------S--------------------------------
-S-----------SSSS----------------------------S----------------------------S-----
------------------------S-S----------------S------------------------------------
-------S-----------------SSSSS-SS-----------------------------------------------
----------------------------------------------------------S---------------------
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S-------S--S-------------------SS--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_315
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-------------------------------------------------------ACCAAAGAAGTGCCCCAACA-----
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>reverse_1892
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---------------------------------------------------GCGGTACTACTACGACGTGG---------
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>forward_351
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-----------TCTTTGCCGCGCCATATAGT-------------------------------------------------
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>reverse_2593
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--------------------------------TTTTTAAACCGGCATCCCGG----------------------------
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