>input_sequence_61990
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--------------------AGTAGAAGCCAGCGAATTTCTTCTGCCATCTATGATGAGGGATAAGTATGAGGCGCTGAG
GAATTATGGACTG---GAAGAATCAGAGGCTACCA---TCTTCCAGAGCGGCGCCAAGCTGGGGAGGCAGCTTGAGGAGA
TAGAAGATGTTACCAGGCGTTGGAAGGTGCTGGCTGATTTCTGGTGCGAGATGATGCTCTACGTTGCCCCGTCAGATAAT
GTCAACGAGCACATCGAGCAGCTCACGCGGGGCGGCGAGCTCATCACCCACCTGTGGGCTTTGCTCTCCCACGCCGGCAT
TCTAGAGAGGGGCCAAGATCAACAGACTCCTCCTAGCCGCCACCCACATGCAGAAAATACCTGTGAGAGTCACCAAGAAA
TTGAGCAAGATTCAGCTAGTCATGAAGGAACTACTCATCATTTGGGAACTACTTCCCCTGCTGATCCTTTGGCGGCTGCT
TCCCCTGCTCATCATTTGGCTGGCAATCTGCAAATGAGTGATTTTGCCCTGCAAGCTCCTTCGCCA-AGGTTGTTCTTCA
AGCTGGCAGCCTGCCACTGATACCTACAACATCGGAAATATCTGCAGCGAACGAATGCCGTATTGATGTTCCTGAAGCTT
CAAGCTCCACAAAGGGAAGCCCTCCCCAAGCTGGTGCGAGCGGATCACTTCACGGCCAGGAGCCATGAAAATCATGAGAG
TTGATTTTCGATGTGTTCCGTATTTATAAGCAGTAAGTCTAGTCTGTTTGGTGCCGTAGTTTCATGCTTTGGTCAGTTGC
CTGTACGTATTGCTTCAGTTATTTCCTGTGTGTTTCTTTCAGCATGCAATTTTGATGCTTCCCTTTTGTAATTTACAAAC
TATGGTGGGCCGGAACTTTTTGTATTCGCATGCTGGGAAAGCTCTGATATGTTTTAGGCAAGAAAATGTATGTACGGTAA
ACTGTGGTTTGCTGGTTACTGTGACTTCTTTTTTTCTAGTTTGGGAAATTTCATGCTTGAACCATCCTTCAGAATAATTG
TGTGTACGTGCGACCTAGAAAAGTTTAGGGTGTGCTCCTATTAAA-----------------------------------
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>chr1D_1_TraesCS1D01G249400
ATTTTATCCCGAAAACTACCACTTTTACATTAATTCGTGGCAAAAAACTACCAAGTGTGAAAACTGCTCGCTTTGCCTGC
GTTAAACCCGAATCTGACTGCCCGACCCCACACATAAGCGGGCTAAAAATGCAATCGCGTCCCTAGTTTTTCTTTAAAAA
AGCAATCCCGTCCCTCGTTCTCCTTCCCCTCCACCTGCCCGGGCCTGGCCGCCGCGTGCGCTCCAGCCATCGATGCCGGC
GAGGCTGCGGAAGTTGGCCCACTCGTCCATGTTGGTCTTGC--------CGAGCACCACGGCGCCGGCCCGCCGAAGCCT
GCGCACCACGCCGGCGTCCCGCC---------------------------------------------------------
-----------------------TGGCCACGGAGCCGAGGAGGG---------------------------------CGA
ACGACCTGGCCGTGGTGTTGAGCGCGTCGCGGGTGGCGATGTTGTCCTTGAGCAGGACGGGGATGCCGTCGAGGG-----
---GCCCGCCGGCGGTCACACACTTGCCGGACGAGGAGGAGCGGCGCTCGGCGTCGGCGC--------------------
--------GACCTCGATGACGGGGCGGAGGAGCGGGTTGAGGCCGCGGATGCGGTCCAGGTAGAACCGGA----------
--------------------------------------------------------------------------------
-----------CGAGGTCCACGGAGGTGAGGCTGCCGTT---------------------GTTGAAGCCGAGCTGGATGC
TGGCCACGCTCGCCTCCTCGATCC------------------------------GGAAGCCATGGGCGCCAGCGGCGGC-
--CAGC------ACG-----------------------------------------------------------------
--------------------------------------------------------------------AGCACCAT---G
G---CGA---CCACTGCCAGCAGCGGCCGAGCCATGCTGGAGCTAACTCCGGCTCGTCGAAGTGTGACCCGATTGCTTTT
TTAAAGAAAAACTAGGGACCCGATTGCATTTTTAGCCCGCTTATGTGTGGGGTCGGGCAGTCAGATTTGGGTTTAACCCA
GACAAAGCGAGCAGTTTTCACACTTGGTAGTTTTTTGCCACGGATTAATACAAAAGTGGTAGTTTTCGGAACAAAATCGT
AAAGTGATAATTTTCTGTCACGTTTCCGCGAATTGTGGTAGTTTTTGGTTAAATACTCTGGGCACCACTATGATACAAGC
CGTTTTTTTGATGCAGTTGCAGTAGAAGCCAGCGAATTTCTTCTGCCATCTATGATGAGGGATAAGTATGAGGCGCTGAG
GAATTATGGACTG---GAAGAATCAGAGGCTACCA---TCTTCCAGAGCGGCGCCAAGCTGGGGAGGCAGCTTGAGGAGA
TAGAAGATGTTACCAGGCGTTGGAAGGTGCTGGCTGATTTCTGGTGCGAGATGATGCTCTACGTTGCCCCGTCAGATAAT
GTCAACGAGCACATCGAGCAGCTCACGCGGGGCGGCGAGCTCATCACCCACCTGTGGGCTTTGCTCTCCCACGCCGGCAT
TCTAGAGAGGGGCCAAGATCAACAGACTCCTCCTAGCCGCCACCCACATGCAGAAAATACCTGTGAGAGTCACCAAGAAA
TTGAGCAAGATTCAGCTAGTCATGAAGGAACTACTCATCATTTGGGAACTACTTCCCCTGCTGATCCTTTGGCGGCTGCT
TCCCCTGCTCATCATTTGGCTGGCAATCTGCAAATGAGTGATTTTGCCCTGCAAGCTCCTTCGCCA-AGGTTGTTCTTCA
AGCTGGCAGCCTGCCACTGATACCTACAACATCGGAAATATCTGCAGCGAACGAATGCCGTATTGATGTTCCTGAAGCTT
CAAGCTCCACAAAGGGAAGCCCTCCCCAAGCTGGTGCGAGCGGATCACTTCACGGCCAGGAGCCATGAAAATCATGAGAG
TTGATTTTCGATGTGTTCCGTATTTATAAGCAGTAAGTCTAGTCTGTTTGGTGCCGTAGTTTCATGCTTTGGTCAGTTGC
CTGTACGTATTGCTTCAGTTATTTCCTGTGTGTTTCTTTCAGCATGCAATTTTGATGCTTCCCTTTTGTAATTTACAAAC
TATGGTGGGCCGGAACTTTTTGTATTCGCATGCTGGGAAAGCTCTGATATGTTTTAGGCAAGAAAATGTATGTACGGTAA
ACTGTGGTTTGCTGGTTACTGTGACTTCTTTTTTTCTAGTTTGGGAAATTTCATGCTTGAACCATCCTTCAGAATAATTG
TGTGTACGTGCGACCTAGAAAAGTTTAGGGTGTGCTCCTATTAAAATTAACTTTGAAGTGTGTATATTATAGTCTTCGAT
TTGATTTAATATTTATGTCGGCTCATGGTTTGACAAATATACATAGTACTTATTTGTGACGAATTACAGGACCATGCTTA
GAAAATTTATGCTCATGGATCATTCTCGAAGAAAATAATATTATGCTCATGGTTTATTTTCTTAAGATTGGAAGAATATA
GATTTTCTATCTTTTCGTGCGGAAGCCGCACTA---TTAAGAATGGATGGTCAAGTTATGGTGCATAAGCTCTAGTGCCG
AGACTGTAGGATATTACTGGGGTCGAGCATGTCATGTTTCACGTGCTGCCACTAGAAACAAGTTACGCGCGCAGAGTACG
TTTAATTAACTAACAGAAACGCTTGGAG-CAGCTGACTGATAACTGGGATGCACATCGACATGTGGCCGTGGGATCCGAG
TT-GATCAGAAGGCACGCAGCGCATC------------------------------------------------------
------------------------------AACCTTGTTGCAAAGAAAGGGATTTGAGGATCTAGTTTGCAGTCGAGGAA
AAAAAATAAAAATTCAATGGAGATTGCAACAAGGTTCGTGTTGTAAAGCCTTGAGCGCAACATGAACCTTTGTTGCAAAG
AAAGGGA--------------------------------------------------------------TTTAAGGATTT
ATTTGCAATCATAGAAAAAAAACT-GCTCGGTGTGGATTGCAACAAGGCCGCAATGAGGGTAACATGAACCTTGTTGCAA
AGGCCCGACGGCTCAGGACGAGGGATCGGACGGTTGTTCCGGGTTCCTTCGAACTGCTGCCCGCGCGGTCGATCTTCTAG
GATTATTGTCCCACAGACGTGCAACTTAGAGCAACTTCAATGGGGCGACCCATTTCGTCTGCCCGCGTCCGTTTGGATCG
GCGCGGGCAAAAATGGTGGCCCAACGCGCCGACCCAAACCCAAATCACGTCCGGTTCGTGTCCGCGCCGACGCATTTGCG
GCCCAAATTTGCGTCCCAAATGCGTCGGCGCGGATGCCGAACGGATGCCACGCGCGCCTTCTCGCTGTCCGCCGCGT
>chr7D_1
ATTTTGTCCCGAAAACTACCACTTTTGTATTAATCCGTGGCAAAAAACTACCAAGTGTGAAAACTGCTCGCTTTGCCTGG
GTTAAACCCGAATCTGACTGCCCGACCCCACACATAAGCGGGCTAAAAATGCAATCGGGTCCCTAGTTTTTCTTAAAAAA
AGCAATCCCGTCCCTCGTTCTCCTTCCCCTCCACCTGCCCGGGCCTGGCCGCCGCGTGCGCTCCAGCCATCGATGCCGGC
GAGGCTGCGGAAGTTGGCCCACTCGTCCATGTTGGTCTTGC--------CGAGCACCACGGCGCCGGCCCGCCGCAGCCT
GCGCACCACGCCGGCGTCCCGCC---------------------------------------------------------
-----------------------TGGCCACGGAGCCGAGGAGGG---------------------------------CGA
ACGACCCGGCCGTGGTGTTGAGCGCGTCGCGGGTGGCGATGTTGTCCTTGAGCAGGACGGGGATGCCGTCGAGGG-----
---GCCCGCCGGCGGTCACACACTTGCCGGACGAGGAGGAGCGGCGCTCGGCGTCGGCGC--------------------
--------GACCTCGATGACGGGGCGGAGGAGCGGGTTGAGGCCGCGGATGCGGTCCAGGTAGAACCGGA----------
--------------------------------------------------------------------------------
-----------CGAGGTCCACGGAGGTGAGGCTGCCGTT---------------------GTTGAAGCCGAGCTGGATGC
TGGCCACGCTCGCCTCCTTGATCC------------------------------GGAAGCCATGGGCGCCAGCGGCGGC-
--CAGC------ACG-----------------------------------------------------------------
--------------------------------------------------------------------AGCACCAT---G
G---CGG---CCACTGCCAGCAGCGGCCGAGCCATGCTGGAGCTAACTCCGGCTCGTCGAAGTGTGACCCGATTGCTTTT
TTAAAGAAAAACTAAGGACCCGATTGCATTTTTAGCCCGCTTATGTGTGGGGTCGGGCAGTCAGATTCAGGTTTAACCCA
GGCAAAGCGAGCAGTTTTCACACTTGGTAGTTTTTTACCACGGATTAATACAAAAGTGATAGTTTTCGGGACAAAATCGT
AAAGTGGTAGTTTTCTGTCACGTTTCCGCGAATTGTGATAGTTTTTG-TTAAATACTC----------------------
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>chr3D_1
ATTTTGTCCCGAAAACTACCACTTTTTTATTAATCCGTGGCAAAAAACTACCAAGTGCGAAAACTGCTCGCTTTGCCTGG
GTTAAACGCGAATCTGACTGCCCGACCCCACACATAAGCGGGCTAAAAATGCAATCGGGTCCCTAGTTTTTCTTAAAAAA
GCAATCGGGT--CCTCCGCCTCCTTCTCCTCCTCGTCGCCGGCC------------------------------------
-------------------------------TCCTCCTTCC--------CCAGCCGCTTGCCGCCGGCGGACGGGAACGG
CTGCTGCTGCTGCGGTGTGGAACCGGTCGGTATCATGCACTCATGTCTACAGTATCGTATATGTATCTAGCACCTAGCAG
AGCTTAATCAAGCTAGCAGAGGATTGCCACGGCGACGAGCAATAGGAGCGGGGTGGCCGTGGCCGTCGACGTCTTCTCGG
GCGACCTGGTATTGGTGTAGGCCGCCGCGGGGGAGGCG------------------------------------------
--------------------------------GAGGAGGTGTCGGGCTCGGAGAGGGAGCTGAGGCTGAACCG-------
--CGGGTTGGAACC------------GTAGAGCGCCTGCATGCCGCGGACGTTGTCCAGGTTAGCTCCGTCTTGCGCGTC
CGCGGCTTCAGGCTCGGGTACATGACGGCGTCCGGCACCGACGAGTGCGCCAGCCCCAGCATGTGGCCGATCTCGTGCGT
GGCCACCGACTCCAGGTTCACGGCGCCGGCGCTGCCGAGGACGGCCCAGCGCTCGGCGGCGTCGAGGTGGAGCTGGCCGC
TGGGCGGGGAGAAGGCGTGGCCGAGCACGCCGAGCGGCCCGTCGAAGGGCTCGCCGTCGCCGTGGTCGCCGGAG------
---AGGAAGCCCACCCTGACGTCGGCCATGTTGTAGTCCCGCGTCTCGCGGAACCGCACCGGGATGACGCGCGCCCAGCG
CGCGAAGGCGCGGCGGAAGTTCCTCCAGATGCAGCCGTTCCCGTCCGCCGGCGGCAAGCGGCTGGGAAAGGAGGAGGCCG
GCGACGA---GGAGGAGAAGGAGGCGGAG------------------------------------GACCCGATTGCTTTT
TTAAAGAAAAACTAGGGACCCGATTGCATTTTTAGCCCGCTTATGTGTGGA-TCGGGCAGTCAGATTCGCGTTTAATCCA
GGCAAAGCGAGCAGTTTTCACACTTGGTAGTTTTTTGCCACGGATTAATAAAAAAGTGGTAGTTTTCGGGACAAAATCGT
AAAGTGGTAGTTTTCTGTCACGTTTCCGCGAATTGTGGTAGTTTTTGGTTAAATACTC----------------------
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>chr2A_198
--------------------------------------------------------------------------------
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-------------------------------------CCCGGGCCTGGCCGCCGCGCGCGCTCCAGCCGTCGGTGCCGGC
GAGGCTGCGGAAGTTGGCCCACTCGTCCATGTTGGCCTTGC--------CGAGCACCACGGCGCCCGCGCGCCGCAGCCG
ACGCACCACGCCGGCGTCCCGCC---------------------------------------------------------
-----------------------TGGCCACGGAGCCGAGGAGAG---------------------------------CGA
AGGACCCGGCGGTCGTGTTGAGCGCGTCGCGGGTGGCGATGTTGTCCTTGAGCAGGACGGGCACGCCGTGCAGCG-----
---GCCCGCCGGCGGTCACGCACTTGCCGGAGGAAGAGGAGCGGCGCTCTGCGTCGGCGCGCGCGGCCTGCCGGAGCGCG
TCCGGGTTGACCTCGATGACGGCGCGGAGGAGCGGGTTGAGGCCGCGGATGCGGTCCAGGTAGAAGCGGA----------
--------------------------------------------------------------------------------
-----------CGAGCTCCACGGAGGTGAGGCTGCCGTT---------------------GTTGAAGCCGAGCTGGATGC
TGGCCAAGGTCGCCTCCTCGATCT------------------------------CGAAGCCATGGGCGCCAGCGGCGGC-
--CAGC------ACG-----------------------------------------------------------------
--------------------------------------------------------------------AGCACCAT---G
G---CGG---CCACTGCCAGCAGCGGCCGAGGCATGCTGGAGCTAACGCCGGCACGTCCAAATGTGA-------------
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>chr2B_198
--------------------------------------------------------------------------------
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-------------------------------------CCCGGGCCTGGCCGCCGCGCGCGCTCCAGCCGTCGGTGCCGGC
GAGGCTGCAGAAGTTGGCCCACTCGTCCATGTTGGCCTTGC--------CGAGCACCACGGCGCCGGCCCGCCGCAGCCG
ACGCACCACGCCGGCGTCCCGCC---------------------------------------------------------
-----------------------TGGCCACAGAGCCGAGGAGCG---------------------------------CAA
AGGAGCCGGCCGTGGTGTTGAGCGTGTCGCGGGTGGCGATGTTGTCCTTGAGCAGGACGGGCACGCCGTGCAGGG-----
---CCCCGCAT------------TTGCCGGACGAGGAGGAGCGGCGCTCTGCGTCGGCGCGCGCGGCCTGCTGGACCGTG
CCCGGGTTGACCTCGATGACGGCGCGGAGGAGCGGGTTGAGGCCGCGGATGCGGTCCAGGTAGAACCGGA----------
--------------------------------------------------------------------------------
-----------CGAGGTCCACGGAGGTGAGGCTGCCGTT---------------------GTTGAAGCCGAGCTGGATGC
TGGCCACGGTCGCCTCCTCGATCT------------------------------CGAAGCCATGGGCGCCGGCGGCGGCA
AACAGC------AGG-----------------------------------------------------------------
--------------------------------------------------------------------AGCATGAGCGCG
G---CGG---CCACTGCCAGGAGCGGCCGAGCCATCCTGGAGCTAACGCCGGCCTGTCCAAGTGTGA-------------
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>chr2D_198
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-------------------------------------CCCTGCCCTTGCCGCCGCGGGCGCTCCAGCCGCC---GCCGGA
GAAGCTGCGGAAGTTGGCCCACTCGTCCATGTTCGCCTTGC--------CGAGCACCACGGCGCCGGCGCGCCGCAGCCG
GCGCACCACGCCGGCGTCACGCC---------------------------------------------------------
-----------------------TCACCACGGAGCCAAGCAGCG---------------------------------CGA
ACGACCCGGCCGTGGTGTTGAGCGCGTCGCAGGTGGCGATGTTGTCCTTGAGCAGGACGGGCACGCCGTGCAGCGCGCCG
ATGGCTCGATGGCGGCGGCC-----------------GGAGCAGCGCTCGGCGTCGGCGCGGGCCGCCTGCCGGAGCGCG
TCTGGGTTGACCTCAATGACGGCGTGCAGCAGCGGGTTGAAGTTGCTGATCCGGTCCAGGTAGAACCGGA----------
--------------------------------------------------------------------------------
-----------CGAGCTCCACGGAGGTGAGGCTCCCGTT---------------------GTTGAAGCCGATCTGGATGC
TGGCCACGGTTGCCTCCTCGATCT------------------------------GGAAGCCATGGGCACCGGGG------
---AGCTCGAGGACG-----------------------------------------------------------------
--------------------------------------------------------------------AGCACGAGGGCG
GCGACGA---GGACTGCCAGGAGCGGCCGAGGCATCCTGGAGC-------------------------------------
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>chr2A_204
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-------------------------------------------CCTTGCCGCCGCGGGCACTCCAGCCGCC---GCCCGA
GAAGCTGCGGAAGTTGGCCCACTCGTCCATGTTCGCCTTGC--------CGAGCACCACGGCCCCGGCGCGCCGCAGCCT
GCGCACCACGCCGGCGTCCCGCC---------------------------------------------------------
-----------------------TCACCACGGAGCCGAGCATCG---------------------------------CGA
ACGACCCGGCCGTCGTGTTAAGCGCGTCGCGCGTGGCGATGTTGTCCTTGAGCAGGACAGGCACGCCGTGCAGCGCGCCG
ATGGCTCGACGGCGGCGGCC-----------------GGAGCAGCGCTCCGCGTCCGCACGGGCCGCCTGCCGGAGCGCG
TCTGGGTTGACCTCGATGACGGCGTGCAGCAGCGGGTTGAGGCGGCTGATGCGGTCGAGGTAGAACCGGA----------
--------------------------------------------------------------------------------
-----------CGAGCTCCATGGAGGTGAGGCTCCCGTT---------------------GTTGAAGCCGAGCTGGATGC
TGGCCACGGTTGCCTCCTCGATCT------------------------------GGAAGCCATGGGCACCGGGG------
---AGCTCGAGGACG-----------------------------------------------------------------
--------------------------------------------------------------------AGCACGAGGGCG
GCGACGA---GGACTGCCACGAGCGGCCGAGGCATCCTGGAGC-------------------------------------
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>chr2B_204
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-------------------------------------------CCTTGCCACCGCGGGCGCTCCAGCCGCC---GCCGGA
GAAGCTGCGGAAGTTAGCCCACTCGTCCATGTTCGCCTTGC--------CCAGCACCACGGCCCCGGCGCGCCGCAGCCT
GCGCACCACACCGGCGTCCCGCC---------------------------------------------------------
-----------------------TCACCATGGAGCCGAGCAGCG---------------------------------CGA
ACGACCCGGCCGTGGTGTTGAGCGCGTCGCGCGTGGCGATGTTGTCCTTGAGCAGGACGGGCACGCCGCGCAGCGCGCCG
CTAGCCCGACTGCGGCGAAC-----------------GGAGCAGCGCTCGGCGTCGGCGCGGGCCGCCTGCCTGAGCGCG
TCCGGGTTGACCTCGATGACGGCGTGCAGCAGCGGGTTGAGACGGCTGATGCGGTCCAGGTAGAACCGGA----------
--------------------------------------------------------------------------------
-----------CGAGGTCCACCGAGGTGAGGCTGCCGTT---------------------GTTGAAGCCGAGCTGGATGC
TGGCAACGGTCGCCTCCTCGATCC------------------------------GGAAGCCATGAGCACCGGCG------
---AGC------GCG-----------------------------------------------------------------
--------------------------------------------------------------------AGCACGAGGGCG
GCGACGATGACGACTGCCAGGAGCGGCCGAGGCATCCTGGAGC-------------------------------------
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>chr2B_207
--------------------------------------------------------------------------------
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----------------------------------------------GGCCGCCGCGGGCGCTCCAGCCGCC---ACCGGA
GAAGCTGCGGAAGTTGGCCCACTCGTCCATGTTTGCCTTGCCGGCTTGCCCAGCACCACGGCGCCGGCGCGCCGCAGCCT
GCGCACCACGCCGGCGTCCCGCC---------------------------------------------------------
-----------------------TCACCACGGAGCCGAGAAGCG---------------------------------CGA
ATGACCCAGCCGTGGTGTTGAGCGCGTCGCGCGTGGCGATGTTGTCCTTGAGCAGGACGGGCACGCCGTGCAGCGCGCCG
ATGGCTCGACGGTGGCGGCC-----------------GGAGCAGCGCTCCGCGTCGGCGCGGGCCGCCTGCGGGAGCGCG
TCCGGGTTGACCTCGATGACGGCGTGCAGCAGCCGGTTGAGGCGGCTGATCCGGTCCAGGTAGAACCGGA----------
--------------------------------------------------------------------------------
-----------CGAGGTCCACCGAGGTGAGGCTCCCGTT---------------------GTTGAAGCCGAGCTGGATGC
TGTCCACGCTCGCCTCCTCGATCC------------------------------GGAAGCCATGAGCACCGGCG------
---AGC------GCG-----------------------------------------------------------------
--------------------------------------------------------------------AGCACGAGGGCG
GCGACGG---CGACTGCCAGGAGCGGCCGAGGCATCCTGGAG--------------------------------------
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>chr1B_958
--------------------------------------------------------------------------------
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---------------------------------------------------------CTGGGCACCACTATGACACAAGC
CGTGTGTTTGATGCAGTTGCAATAGAAGCCAGCGAATTTCTTCTGCCATATATGAGGAGAGATAAGTATGAGGCGCTGAG
GATGTATGGACTAGTAGAAGAATCAGAGGCTACCACCATCTTCCAGAGCAGCACCAAGCTGGGGAGGCAGCTCGAGGAGA
TAGAAGATGTTACCAGGCGTTGGAAGGTGTTGGCTGATTTCTGGTGTGAGATGATGCTCTACGTCGCGCCGTCAGATAAT
GTCAACGAGCACATCGAGCAGCTCACGCGGGGCGGCGATCTCATCACCCACCTGTGGGCTTCGCCCTCCCACGCCGGCAT
TCTAGAGAGGGGCCAAGATCAACAGACTCCTCCTAGCTGCCATCCACATGCAGAAAATACTTGTGAGGGTCACCAAGAAA
TTGAGCAAGATTCAGCTAGTCATGAAGGAACTACTCATCATTTGGGAACTACTTCCCCTGTTGATCCTTTGGCGGCTGCT
TTCCCTGCTCATCATTTCGCTGGCAATCTACAAATGAGTGATTTTGCCATGCAAGATCCTTCGCCACAGGTTGTTCTTCA
AGCTG---------------------------------------------------------------------------
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>chr1B_2268
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--------------TCGTGCGGAAGCCGCACTAGTATTAAGAATGGATAGTCAAGTTATGTTGTATAAGCTCTAGTGCCG
GGGTTGTAGGATATTACTTGGGTTGAGCATGTCATGTTTCACGTGCTGCCACGAGAAACAAGTTAAGCGTGCAAGATACG
TTTA----AATAATGGCAACACTTGGAGCCAACCGACTGATAATTGGG-TGCATATCGACATGTGGCCGTGGGATCCGAG
TTAGATCAGATGGCACGCAACGCATCTCTCCTCATGCATCCATGTAGTCTCGGTTGCAAAAAAAAGAAGGGTATGTATTG
CGACAAATTGCACAGGCTGAGCGCAACATGAACCCTATTGCAAAGAAAGGGATTTGAGGATCTAGTTTGCAGTCGTTGG-
-AAAAGATAGAATTCAGCGAGGATTGCAACAAGATTCGTGTTGTGAAGCCTTGATCGTAACATGAACCTTTGTTGCAAAG
AAGGGGA--------------------------------------------------------------TTTAAGGATTT
AGTTGCAATCATAGAAAGAAAAACAGCTCGGTGTGGATTGCAACAAGGCCGCAATGAGGGCAACATGAACCTTGTTGCAA
AGGCCCAACGGCTCATGACGAGGGATTGGACGGTTGTTCGGGGCTCCATCGAACTGCTGCCCGGGCGATTGATCTTCTAG
GATCATTGTCCGACGGACGTGCAGCTTA----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr1B_2268
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--------------TCGTGCGGAAGCCACACTACTATTAAGAATGGATAGTCAAGTTATGTTGTATAAGCTCTAGTGCCG
GGGCTGTAGGATATTACTAGGGTCGAGCATGTCATGTTTCACGTGCTGCCACTAGAAACAAGTTAGGCATGCAAGATACG
TTTA----AATAATGGCAACACTTGGAGCCAACCTACTGATAATTGGG-TGCATATCGACATGTGGCTGTGGGATCCGAG
TT-GATCAGATGGCACGCAAGGCATCTCTCCTCACGCATCCATGTAGTCACGTTTGC-AAAAAAAGAAGGGTATGTATTG
CGACAAGTTGCACAGGCTGAGCGCAACATGAACCTTGTTGCAAAGAAAGGGATTTGAGGATCTAGTTTGCAGTCGTTGG-
-AAAAGATAAAATTCAGCGAGAATTGCAACAAGATTCGTGTTGTGAAGCCTTGAGCGTAAAATGAACCTTTGTTGCAAAG
AATGGGATTTAAGGATTTAGTTTTTTTTTAAAGGAAAGTGGTAGGGGAAGCCCCCCACAGCGAGTTTGGTTTAAGGATTT
AGTTGCAATCATAGAAAGAAAAACAGCTCAGTGTGGATTGCAACAAGGCCGCAATGAGGG--ACATGAACCTTGTTGCAA
AGGCCCGATGGCTCATGACGAGGGATTGGACGGTTGTTCGGGGCTCCGTCTAATTGCTGGCCGGGCGGTCGATCTTCTAG
GAT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>SNPs
-----S--------------------SS------S--------------------------------------------S
---------------------------------------------------------S----------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
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-------------------------------------------------------------------S------------
-S-------------------------------------------------------------------S----------
------S--S---------------------------------------------------------------S------
---S-S---------------S---------------------------S-----S---S--------------------
--SS--------S------------------------------------S--S-------------------S-------
-----------------------------S----------------S-----------------S--S------------
--------------------------------------S----------------------S--S---------------
-------------------------------------S----S-----------------S------S------------
------------------------------------------------------------S-------------------
-S---------------S-----------S------------------S------S------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----------------------------------S-----------S--S----------------
S-S---------------S----------------------------------------------S---S---SSS----
----SSSS-S---SS-S---S----------S-S---------S----S----S--------------------------
----------S--------S------------------------------------------------------------
---------------------------------------------------------------------------SS-SS
S----SSS--------SS-SS------------S----------S------------S----------------------
--S-----------------------------------------------------------------------------
-S---------------S----SS------------------------------------S-------------------
---------------S----------S------------S---S---S---------------S----------------
---S-------S--S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_138
--------------------------------------------------------------------------------
--------------------------------------CGGGCTAAAAATGCAATCGC----------------------
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>reverse_2477
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------ATTG
TGTGTACGTGCGACCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_2339
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
TATGGTGGGCCGGAACTTT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_3607
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ATTTGCGTCCCAAATGCGTC---------------------------------------------------
